Wall clock time and date at job start Tue Mar 31 2020 22:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 5 5 C 1.36936 * 119.99629 * 85.00344 * 4 2 1 6 6 H 1.07999 * 120.00471 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00216 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47153 * 89.99604 * 9 7 5 11 11 H 1.48492 * 109.47181 * 209.99892 * 9 7 5 12 12 H 1.48505 * 109.47087 * 330.00065 * 9 7 5 13 13 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 14 14 H 1.08992 * 109.49822 * 59.93243 * 13 2 1 15 15 C 1.53043 * 109.49438 * 299.83686 * 13 2 1 16 16 C 1.53038 * 109.53502 * 178.68589 * 15 13 2 17 17 C 1.53187 * 109.31576 * 61.36341 * 16 15 13 18 18 N 1.46921 * 108.77788 * 305.36875 * 17 16 15 19 19 C 1.34776 * 120.62929 * 233.63293 * 18 17 16 20 20 O 1.21282 * 120.00221 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00223 * 359.97063 * 19 18 17 22 22 N 1.46498 * 109.47304 * 180.02562 * 21 19 18 23 23 C 1.36364 * 125.96342 * 269.68858 * 22 21 19 24 24 O 1.35631 * 125.98573 * 0.03681 * 23 22 21 25 25 N 1.30908 * 108.02316 * 179.88721 * 23 22 21 26 26 N 1.40112 * 107.93951 * 0.37586 * 25 23 22 27 27 C 1.30907 * 107.93732 * 359.76031 * 26 25 23 28 28 O 1.35625 * 125.98361 * 180.02562 * 27 26 25 29 29 C 1.46923 * 118.74183 * 53.60147 * 18 17 16 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 33 33 H 0.97000 * 119.99818 * 265.00273 * 4 2 1 34 34 H 0.97001 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.45827 * 298.70417 * 15 13 2 36 36 H 1.08995 * 109.46109 * 58.66279 * 15 13 2 37 37 H 1.08998 * 109.49660 * 301.40826 * 16 15 13 38 38 H 1.09001 * 109.52420 * 181.33286 * 16 15 13 39 39 H 1.08994 * 109.59124 * 185.57417 * 17 16 15 40 40 H 1.09004 * 109.70573 * 65.22259 * 17 16 15 41 41 H 1.09005 * 109.46778 * 300.00471 * 21 19 18 42 42 H 1.08999 * 109.46914 * 60.00116 * 21 19 18 43 43 H 0.96700 * 113.99726 * 90.00270 * 24 23 22 44 44 H 0.96709 * 114.00181 * 269.97298 * 28 27 26 45 45 H 1.08998 * 109.59023 * 186.60758 * 29 18 17 46 46 H 1.09000 * 109.70466 * 66.25310 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6124 -0.6617 -3.5090 8 7 2.7376 -0.0052 -4.6430 9 14 3.0565 -2.4742 -3.4252 10 1 1.8594 -3.2926 -3.7451 11 1 4.1323 -2.7661 -4.4063 12 1 3.5309 -2.8049 -2.0574 13 6 2.0400 -0.7213 1.2493 14 1 1.6759 -1.7487 1.2502 15 6 1.5335 0.0020 2.4992 16 6 2.0158 -0.7376 3.7492 17 6 3.5474 -0.7382 3.7782 18 7 4.0441 -1.3005 2.5150 19 6 4.9160 -2.3284 2.5168 20 8 5.3183 -2.7841 1.4673 21 6 5.3910 -2.9113 3.8227 22 7 6.3257 -4.0076 3.5569 23 6 5.9960 -5.3220 3.4047 24 8 4.7455 -5.8429 3.4722 25 7 7.0974 -5.9924 3.1789 26 7 8.1654 -5.0856 3.1946 27 6 7.6781 -3.8926 3.4244 28 8 8.3929 -2.7436 3.5144 29 6 3.5719 -0.7217 1.2499 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.0610 -0.4626 -5.4349 35 1 1.9182 1.0219 2.5095 36 1 0.4438 0.0253 2.4888 37 1 1.6520 -1.7648 3.7273 38 1 1.6353 -0.2358 4.6389 39 1 3.8970 -1.3472 4.6118 40 1 3.9133 0.2822 3.8927 41 1 5.8938 -2.1384 4.4041 42 1 4.5366 -3.2899 4.3838 43 1 4.2837 -5.8685 2.6230 44 1 8.6962 -2.5381 4.4094 45 1 3.9375 -1.3199 0.4153 46 1 3.9376 0.3007 1.1544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667351943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:36 Heat of formation + Delta-G solvation = -38.083622 kcal Electronic energy + Delta-G solvation = -30825.372122 eV Core-core repulsion = 26559.103658 eV Total energy + Delta-G solvation = -4266.268464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.43594 -41.35043 -39.26195 -39.20062 -38.10701 -37.14123 -35.49427 -34.69933 -33.31833 -31.89162 -30.74513 -30.56242 -28.91449 -26.53893 -25.45697 -24.25580 -23.92867 -23.17397 -22.35675 -21.40231 -20.54211 -19.92787 -19.64712 -19.47459 -18.61985 -17.89053 -17.43982 -16.84497 -16.62972 -16.56645 -16.37965 -15.97232 -15.63088 -15.25088 -14.97168 -14.65440 -14.49010 -14.30408 -14.26810 -14.07648 -13.95024 -13.57373 -13.47864 -13.41585 -13.24753 -12.91075 -12.63317 -12.61205 -12.37550 -12.22439 -11.95938 -11.89775 -11.79069 -11.70038 -11.65020 -11.40711 -11.26030 -11.05549 -10.72083 -10.59934 -9.74288 -9.32920 -8.07445 -5.37488 0.31440 0.70673 1.08464 1.27603 1.33429 1.34324 1.36959 1.82213 2.16113 2.40867 2.77406 3.22626 3.25747 3.40337 3.50824 3.78269 3.90565 3.93625 4.04064 4.09364 4.13575 4.19726 4.26950 4.41632 4.57980 4.61224 4.63581 4.74941 4.80776 4.89129 4.90672 5.00557 5.03052 5.15301 5.21223 5.26455 5.36244 5.44690 5.52949 5.61122 5.75807 6.12434 6.18428 6.26028 6.40186 6.73335 6.94696 7.04952 7.83700 7.98761 9.14520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.003782 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.584385 B = 7402.399377 C = 8900.886522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 H 0.047 0.953 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.064 0.936 7 C -0.057 4.057 8 N -0.982 5.982 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.302 1.302 12 H -0.268 1.268 13 C -0.091 4.091 14 H 0.063 0.937 15 C -0.112 4.112 16 C -0.128 4.128 17 C 0.093 3.907 18 N -0.597 5.597 19 C 0.487 3.513 20 O -0.588 6.588 21 C 0.090 3.910 22 N -0.495 5.495 23 C 0.422 3.578 24 O -0.432 6.432 25 N -0.338 5.338 26 N -0.342 5.342 27 C 0.427 3.573 28 O -0.435 6.435 29 C 0.125 3.875 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.359 0.641 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.430 0.570 44 H 0.438 0.562 45 H 0.048 0.952 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -1.679 32.098 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.066 3.934 3 H 0.065 0.935 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.082 0.918 7 C -0.249 4.249 8 N -0.633 5.633 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.229 1.229 12 H -0.194 1.194 13 C -0.111 4.111 14 H 0.081 0.919 15 C -0.150 4.150 16 C -0.166 4.166 17 C -0.027 4.027 18 N -0.329 5.329 19 C 0.274 3.726 20 O -0.468 6.468 21 C -0.036 4.036 22 N -0.215 5.215 23 C 0.111 3.889 24 O -0.235 6.235 25 N -0.182 5.182 26 N -0.186 5.186 27 C 0.116 3.884 28 O -0.239 6.239 29 C 0.002 3.998 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.192 0.808 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.188 0.812 42 H 0.186 0.814 43 H 0.292 0.708 44 H 0.301 0.699 45 H 0.066 0.934 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.163 -2.902 31.155 31.312 hybrid contribution -0.567 0.192 -1.297 1.428 sum 0.596 -2.710 29.858 29.987 Atomic orbital electron populations 1.22308 0.96897 1.01151 1.01136 1.20496 0.93239 0.95150 0.84490 0.93537 1.42918 1.79883 1.09443 1.07420 1.19046 1.34112 0.94557 0.87109 0.91816 1.25281 1.02879 1.01188 0.95555 1.69842 1.55202 1.37233 1.01058 0.85618 0.77580 0.82575 0.77160 1.20180 1.22930 1.19377 1.21648 0.93436 1.00171 0.95880 0.91880 1.21641 1.01917 0.99327 0.92151 1.21925 0.94258 1.01771 0.98614 1.22307 0.95430 1.01238 0.83734 1.48233 1.43226 1.32650 1.08763 1.21413 0.79174 0.80262 0.91720 1.90835 1.58323 1.62077 1.35609 1.22175 0.96279 0.90352 0.94786 1.46665 1.07946 1.08345 1.58512 1.21333 0.88994 0.80198 0.98379 1.84843 1.20211 1.79784 1.38664 1.78229 0.95563 1.21495 1.22921 1.78225 1.18934 0.97294 1.24164 1.21300 0.79971 0.88825 0.98266 1.85018 1.67980 1.32970 1.37900 1.21395 0.94806 0.98043 0.85589 0.93523 0.89740 0.95251 0.80846 0.93522 0.90924 0.89941 0.91362 0.87051 0.86042 0.89139 0.81222 0.81419 0.70800 0.69909 0.93359 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.14 71.98 0.66 -4.02 16 2 C 0.17 5.92 2.47 44.99 0.11 6.03 16 3 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 4 N -0.75 -34.73 4.32 -322.92 -1.40 -36.12 16 5 C -0.22 -12.36 10.41 84.03 0.87 -11.49 16 6 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 7 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 8 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 9 Si 0.94 49.03 27.74 68.60 1.90 50.93 16 10 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.30 -16.20 7.11 99.48 0.71 -15.50 16 12 H -0.27 -13.50 6.52 99.48 0.65 -12.85 16 13 C -0.09 -2.27 1.97 -10.71 -0.02 -2.29 16 14 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 15 C -0.11 -1.61 4.86 30.62 0.15 -1.46 16 16 C -0.13 -0.88 6.08 30.67 0.19 -0.69 16 17 C 0.09 0.60 6.34 86.36 0.55 1.15 16 18 N -0.60 -11.02 2.97 -818.94 -2.43 -13.45 16 19 C 0.49 10.62 7.77 87.66 0.68 11.30 16 20 O -0.59 -21.21 15.84 -3.03 -0.05 -21.26 16 21 C 0.09 0.91 4.84 85.63 0.41 1.32 16 22 N -0.49 -9.44 2.25 -759.28 -1.71 -11.15 16 23 C 0.42 9.74 9.15 179.72 1.65 11.38 16 24 O -0.43 -7.10 13.58 -89.44 -1.21 -8.32 16 25 N -0.34 -10.27 12.72 -173.66 -2.21 -12.48 16 26 N -0.34 -10.32 12.72 -173.66 -2.21 -12.53 16 27 C 0.43 9.70 9.15 179.72 1.65 11.35 16 28 O -0.43 -6.78 13.58 -89.38 -1.21 -7.99 16 29 C 0.12 3.54 5.47 86.36 0.47 4.01 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.84 6.40 -2.39 -0.02 1.82 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.36 16.77 5.47 -92.71 -0.51 16.27 16 34 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.08 6.36 -2.39 -0.02 1.06 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.12 -0.22 5.93 -2.39 -0.01 -0.24 16 40 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.17 0.21 7.94 -2.38 -0.02 0.19 16 42 H 0.17 0.45 7.69 -2.39 -0.02 0.43 16 43 H 0.43 4.52 9.06 -74.06 -0.67 3.85 16 44 H 0.44 0.52 9.06 -74.05 -0.67 -0.15 16 45 H 0.05 1.91 6.51 -2.39 -0.02 1.89 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -97.12 377.61 -3.25 -100.37 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -0.85 Total: 12.55 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.83 Total: 23.57 kcal Atomic # 7 Polarization: -140.21 SS G_CDS: -9.65 Total: -149.86 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -2.48 Total: -37.56 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.90 Total: 50.93 kcal Total: -97.12 -3.25 -100.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667351943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.288 kcal (2) G-P(sol) polarization free energy of solvation -97.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds