Wall clock time and date at job start Tue Mar 31 2020 22:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 N 1.46502 * 109.46649 * 119.99943 * 2 1 3 5 5 C 1.36943 * 119.99794 * 274.99581 * 4 2 1 6 6 H 1.07998 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00043 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99561 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00148 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46961 * 60.00561 * 9 7 5 11 11 H 1.48503 * 109.47082 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47122 * 300.00735 * 9 7 5 13 13 C 1.52997 * 109.47389 * 239.99792 * 2 1 3 14 14 H 1.09007 * 109.49432 * 299.93657 * 13 2 1 15 15 C 1.53043 * 109.49647 * 59.99779 * 13 2 1 16 16 C 1.53045 * 109.53613 * 181.34928 * 15 13 2 17 17 C 1.53193 * 109.31211 * 298.63732 * 16 15 13 18 18 N 1.46927 * 108.77386 * 54.63774 * 17 16 15 19 19 C 1.34777 * 120.63303 * 126.36982 * 18 17 16 20 20 O 1.21283 * 120.00463 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.72079 * 19 18 17 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.36372 * 125.96717 * 269.69193 * 22 21 19 24 24 O 1.35633 * 125.98141 * 0.03437 * 23 22 21 25 25 N 1.30898 * 108.03045 * 179.88402 * 23 22 21 26 26 N 1.40118 * 107.93742 * 0.37145 * 25 23 22 27 27 C 1.30906 * 107.94020 * 359.76500 * 26 25 23 28 28 O 1.35626 * 125.99220 * 180.02562 * 27 26 25 29 29 C 1.46925 * 118.74028 * 306.63705 * 18 17 16 30 30 H 1.08992 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47388 * 300.00413 * 1 2 3 32 32 H 1.09007 * 109.46826 * 60.00283 * 1 2 3 33 33 H 0.96994 * 120.00239 * 95.00276 * 4 2 1 34 34 H 0.97006 * 119.99401 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45653 * 61.33198 * 15 13 2 36 36 H 1.08988 * 109.46264 * 301.37260 * 15 13 2 37 37 H 1.08996 * 109.49670 * 178.68970 * 16 15 13 38 38 H 1.09000 * 109.49698 * 58.59077 * 16 15 13 39 39 H 1.08997 * 109.59146 * 294.85081 * 17 16 15 40 40 H 1.08999 * 109.58394 * 174.42111 * 17 16 15 41 41 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 42 42 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 43 43 H 0.96698 * 113.99983 * 90.00207 * 24 23 22 44 44 H 0.96700 * 114.00020 * 269.97934 * 28 27 26 45 45 H 1.09000 * 109.59194 * 173.14578 * 29 18 17 46 46 H 1.09004 * 109.59115 * 293.57214 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6111 -0.6619 3.5094 8 7 2.9240 -1.9390 3.4503 9 14 2.7889 0.2699 5.1186 10 1 1.4664 0.8067 5.5285 11 1 3.2978 -0.6485 6.1688 12 1 3.7442 1.3924 4.9378 13 6 2.0401 -0.7213 -1.2492 14 1 1.6779 -1.7494 -1.2490 15 6 1.5302 -0.0004 -2.4992 16 6 2.0120 -0.7405 -3.7491 17 6 3.5436 -0.7382 -3.7805 18 7 4.0433 -1.2983 -2.5174 19 6 4.9170 -2.3245 -2.5192 20 8 5.3225 -2.7778 -1.4699 21 6 5.3860 -2.9124 -3.8252 22 7 6.3187 -4.0104 -3.5595 23 6 7.6724 -3.8997 -3.4378 24 8 8.3907 -2.7538 -3.5410 25 7 8.1568 -5.0924 -3.2009 26 7 7.0863 -5.9962 -3.1778 27 6 5.9853 -5.3228 -3.3965 28 8 4.7325 -5.8394 -3.4508 29 6 3.5677 -0.7225 -1.2521 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1527 34 1 3.2466 -2.3964 4.2426 35 1 1.9130 1.0202 -2.5113 36 1 0.4406 0.0209 -2.4871 37 1 1.6293 -0.2399 -4.6385 38 1 1.6501 -1.7684 -3.7254 39 1 3.9053 0.2836 -3.8954 40 1 3.8929 -1.3476 -4.6139 41 1 4.5286 -3.2907 -4.3821 42 1 5.8885 -2.1425 -4.4107 43 1 8.5100 -2.2876 -2.7023 44 1 4.4610 -6.1206 -4.3352 45 1 3.9328 -1.3215 -0.4178 46 1 3.9313 0.3006 -1.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667351944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:41 Heat of formation + Delta-G solvation = -3.000040 kcal Electronic energy + Delta-G solvation = -30677.444022 eV Core-core repulsion = 26412.696896 eV Total energy + Delta-G solvation = -4264.747126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.49991 -40.31503 -38.38842 -38.03338 -37.29142 -35.61268 -34.53727 -33.10045 -31.90823 -30.28385 -29.75152 -28.79311 -27.79305 -25.43948 -23.94762 -23.14988 -22.98104 -22.26319 -21.36543 -19.81985 -19.53512 -19.10299 -18.61317 -17.80883 -17.14797 -16.93298 -16.47489 -15.73686 -15.63032 -15.43572 -14.91544 -14.62845 -14.38651 -14.05286 -13.82205 -13.49119 -13.41136 -13.19127 -13.09531 -12.94179 -12.61828 -12.57692 -12.41828 -12.13029 -11.59375 -11.46777 -11.23767 -11.10414 -10.89844 -10.79295 -10.77004 -10.74079 -10.70516 -10.36369 -10.23565 -9.94681 -9.69173 -9.59504 -9.57753 -8.92813 -8.69714 -6.96054 -5.73938 -3.04225 1.22774 1.54407 2.05353 2.31744 2.76243 3.04337 3.44176 3.48490 3.50668 3.52305 4.02726 4.07882 4.43020 4.49850 4.59081 4.70430 4.84116 4.99433 4.99584 5.09234 5.18136 5.22959 5.44806 5.54054 5.56354 5.62744 5.68218 5.78246 5.84801 5.90140 5.97634 6.08900 6.12883 6.31292 6.36007 6.38899 6.56454 6.63943 6.79938 6.84827 7.03791 7.06655 7.23330 7.69883 7.70648 7.93706 8.43181 9.54283 10.11146 10.45153 11.47963 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.003379 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.118816 B = 8285.353053 C = 9761.871186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.244 4.244 6 H 0.069 0.931 7 C -0.010 4.010 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.116 4.116 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.604 5.604 19 C 0.493 3.507 20 O -0.512 6.512 21 C 0.084 3.916 22 N -0.498 5.498 23 C 0.416 3.584 24 O -0.440 6.440 25 N -0.294 5.294 26 N -0.295 5.295 27 C 0.418 3.582 28 O -0.430 6.430 29 C 0.123 3.877 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.416 0.584 44 H 0.408 0.592 45 H 0.108 0.892 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 2.066 -24.201 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.375 4.375 6 H 0.087 0.913 7 C -0.206 4.206 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.154 4.154 16 C -0.173 4.173 17 C -0.020 4.020 18 N -0.338 5.338 19 C 0.277 3.723 20 O -0.386 6.386 21 C -0.044 4.044 22 N -0.218 5.218 23 C 0.106 3.894 24 O -0.241 6.241 25 N -0.137 5.137 26 N -0.139 5.139 27 C 0.109 3.891 28 O -0.229 6.229 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.276 0.724 44 H 0.266 0.734 45 H 0.126 0.874 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.227 0.725 -23.162 23.280 hybrid contribution -1.149 1.535 0.671 2.031 sum 1.078 2.260 -22.491 22.630 Atomic orbital electron populations 1.22487 0.99262 1.00828 0.99920 1.20161 0.91894 0.95207 0.85716 0.93518 1.42447 1.78135 1.10729 1.05286 1.19135 1.37189 0.93768 0.87376 0.91332 1.24741 1.02007 0.95895 0.97990 1.69659 1.50334 1.08607 1.28997 0.86319 0.77697 0.78631 0.83808 1.21334 1.21705 1.21312 1.21692 0.94465 1.00630 0.95543 0.91178 1.21635 1.01311 0.99067 0.93353 1.21928 0.94414 1.01785 0.99133 1.21820 0.95361 0.99521 0.85283 1.48186 1.43706 1.33503 1.08421 1.20514 0.80381 0.80607 0.90786 1.90875 1.55910 1.59304 1.32552 1.21786 0.94881 0.90285 0.97437 1.46622 1.07544 1.08673 1.58929 1.21257 0.78707 0.89599 0.99837 1.84855 1.69050 1.32537 1.37630 1.78355 1.17984 0.96723 1.20662 1.78360 0.93779 1.19838 1.21919 1.21249 0.87921 0.80225 0.99752 1.85067 1.23067 1.79294 1.35489 1.21686 0.94147 0.99088 0.84923 0.93607 0.92813 0.94301 0.78211 0.93391 0.91737 0.90987 0.90709 0.91468 0.90738 0.90572 0.85851 0.85482 0.72431 0.73399 0.87407 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.18 3.31 2.48 -67.93 -0.17 3.15 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -17.60 4.52 -53.42 -0.24 -17.85 16 5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 9 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C -0.10 -1.51 1.96 -90.72 -0.18 -1.69 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.19 4.85 -26.69 -0.13 -1.32 16 16 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 17 C 0.10 0.72 6.35 -3.71 -0.02 0.69 16 18 N -0.60 -7.00 2.98 -173.03 -0.52 -7.52 16 19 C 0.49 6.39 7.77 -10.98 -0.09 6.30 16 20 O -0.51 -9.71 15.84 5.55 0.09 -9.62 16 21 C 0.08 0.68 4.84 -5.19 -0.03 0.66 16 22 N -0.50 -5.70 2.25 -121.35 -0.27 -5.97 16 23 C 0.42 5.27 9.15 -88.82 -0.81 4.46 16 24 O -0.44 -4.17 13.57 -18.60 -0.25 -4.42 16 25 N -0.29 -4.58 12.72 29.65 0.38 -4.20 16 26 N -0.30 -4.64 12.72 29.66 0.38 -4.26 16 27 C 0.42 5.40 9.15 -88.80 -0.81 4.58 16 28 O -0.43 -4.29 13.58 -18.58 -0.25 -4.55 16 29 C 0.12 1.90 5.45 -3.93 -0.02 1.88 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.52 6.40 -51.93 -0.33 0.19 16 33 H 0.38 10.26 7.61 -40.82 -0.31 9.95 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 6.36 -51.94 -0.33 0.40 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.29 5.93 -51.93 -0.31 -0.02 16 41 H 0.12 0.61 7.69 -51.92 -0.40 0.21 16 42 H 0.13 0.65 7.94 -51.93 -0.41 0.24 16 43 H 0.42 2.54 9.06 45.56 0.41 2.96 16 44 H 0.41 1.28 9.06 45.56 0.41 1.70 16 45 H 0.11 2.23 6.50 -51.93 -0.34 1.89 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -39.36 380.68 -6.53 -45.89 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.95 Total: 9.15 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.32 Total: 7.93 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: 0.45 Total: -67.64 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.42 Total: -18.59 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.36 -6.53 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667351944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.894 kcal (2) G-P(sol) polarization free energy of solvation -39.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds