Wall clock time and date at job start Tue Mar 31 2020 22:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46715 * 2 1 4 4 N 1.46502 * 109.46649 * 119.99943 * 2 1 3 5 5 C 1.36943 * 119.99794 * 274.99581 * 4 2 1 6 6 H 1.07998 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00043 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99561 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00148 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46961 * 60.00561 * 9 7 5 11 11 H 1.48503 * 109.47082 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47122 * 300.00735 * 9 7 5 13 13 C 1.52997 * 109.47389 * 239.99792 * 2 1 3 14 14 H 1.09007 * 109.49432 * 299.93657 * 13 2 1 15 15 C 1.53043 * 109.49647 * 59.99779 * 13 2 1 16 16 C 1.53045 * 109.53613 * 181.34928 * 15 13 2 17 17 C 1.53193 * 109.31211 * 298.63732 * 16 15 13 18 18 N 1.46927 * 108.77386 * 54.63774 * 17 16 15 19 19 C 1.34777 * 120.63303 * 126.36982 * 18 17 16 20 20 O 1.21283 * 120.00463 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.72079 * 19 18 17 22 22 N 1.46499 * 109.47257 * 180.27849 * 21 19 18 23 23 C 1.36372 * 125.96717 * 269.69193 * 22 21 19 24 24 O 1.35633 * 125.98141 * 0.03437 * 23 22 21 25 25 N 1.30898 * 108.03045 * 179.88402 * 23 22 21 26 26 N 1.40118 * 107.93742 * 0.37145 * 25 23 22 27 27 C 1.30906 * 107.94020 * 359.76500 * 26 25 23 28 28 O 1.35626 * 125.99220 * 180.02562 * 27 26 25 29 29 C 1.46925 * 118.74028 * 306.63705 * 18 17 16 30 30 H 1.08992 * 109.47339 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47388 * 300.00413 * 1 2 3 32 32 H 1.09007 * 109.46826 * 60.00283 * 1 2 3 33 33 H 0.96994 * 120.00239 * 95.00276 * 4 2 1 34 34 H 0.97006 * 119.99401 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45653 * 61.33198 * 15 13 2 36 36 H 1.08988 * 109.46264 * 301.37260 * 15 13 2 37 37 H 1.08996 * 109.49670 * 178.68970 * 16 15 13 38 38 H 1.09000 * 109.49698 * 58.59077 * 16 15 13 39 39 H 1.08997 * 109.59146 * 294.85081 * 17 16 15 40 40 H 1.08999 * 109.58394 * 174.42111 * 17 16 15 41 41 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 42 42 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 43 43 H 0.96698 * 113.99983 * 90.00207 * 24 23 22 44 44 H 0.96700 * 114.00020 * 269.97934 * 28 27 26 45 45 H 1.09000 * 109.59194 * 173.14578 * 29 18 17 46 46 H 1.09004 * 109.59115 * 293.57214 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8919 1.0404 2.4244 7 6 2.6111 -0.6619 3.5094 8 7 2.9240 -1.9390 3.4503 9 14 2.7889 0.2699 5.1186 10 1 1.4664 0.8067 5.5285 11 1 3.2978 -0.6485 6.1688 12 1 3.7442 1.3924 4.9378 13 6 2.0401 -0.7213 -1.2492 14 1 1.6779 -1.7494 -1.2490 15 6 1.5302 -0.0004 -2.4992 16 6 2.0120 -0.7405 -3.7491 17 6 3.5436 -0.7382 -3.7805 18 7 4.0433 -1.2983 -2.5174 19 6 4.9170 -2.3245 -2.5192 20 8 5.3225 -2.7778 -1.4699 21 6 5.3860 -2.9124 -3.8252 22 7 6.3187 -4.0104 -3.5595 23 6 7.6724 -3.8997 -3.4378 24 8 8.3907 -2.7538 -3.5410 25 7 8.1568 -5.0924 -3.2009 26 7 7.0863 -5.9962 -3.1778 27 6 5.9853 -5.3228 -3.3965 28 8 4.7325 -5.8394 -3.4508 29 6 3.5677 -0.7225 -1.2521 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1527 34 1 3.2466 -2.3964 4.2426 35 1 1.9130 1.0202 -2.5113 36 1 0.4406 0.0209 -2.4871 37 1 1.6293 -0.2399 -4.6385 38 1 1.6501 -1.7684 -3.7254 39 1 3.9053 0.2836 -3.8954 40 1 3.8929 -1.3476 -4.6139 41 1 4.5286 -3.2907 -4.3821 42 1 5.8885 -2.1425 -4.4107 43 1 8.5100 -2.2876 -2.7023 44 1 4.4610 -6.1206 -4.3352 45 1 3.9328 -1.3215 -0.4178 46 1 3.9313 0.3006 -1.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667351944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:40 Heat of formation + Delta-G solvation = -40.337561 kcal Electronic energy + Delta-G solvation = -30679.063099 eV Core-core repulsion = 26412.696896 eV Total energy + Delta-G solvation = -4266.366202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.41545 -41.31302 -39.20488 -39.18000 -38.09170 -37.01137 -35.47029 -34.66444 -33.15889 -31.61972 -30.72871 -30.25572 -28.86911 -26.54884 -25.60013 -24.33521 -23.91118 -23.15966 -22.40311 -21.16979 -20.51940 -19.91021 -19.45309 -19.18841 -18.59456 -17.87596 -17.38743 -16.81930 -16.63658 -16.54228 -16.32668 -15.69045 -15.59614 -15.30865 -15.09208 -14.69131 -14.35604 -14.24183 -14.01576 -13.97070 -13.90295 -13.45091 -13.43353 -13.39233 -13.03062 -12.77307 -12.60999 -12.54726 -12.38409 -12.20424 -12.00306 -11.87720 -11.74793 -11.67313 -11.63631 -11.36847 -11.19036 -10.96593 -10.68500 -10.58045 -9.70145 -9.01078 -7.94219 -5.22809 0.32895 0.73204 1.10202 1.38125 1.42901 1.46161 1.52480 1.86247 2.17892 2.54511 2.79056 3.25877 3.39580 3.41921 3.72914 3.84527 3.93255 3.96687 4.10521 4.14440 4.19130 4.21554 4.31451 4.44484 4.60595 4.63179 4.65219 4.78304 4.86042 4.91846 4.94493 5.03839 5.04885 5.17332 5.22089 5.29275 5.39670 5.47563 5.49966 5.56362 5.63811 6.14992 6.26592 6.29818 6.42255 6.74890 6.99867 7.32026 8.10916 8.31479 9.29052 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.003379 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.118816 B = 8285.353053 C = 9761.871186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.301 1.301 12 H -0.277 1.277 13 C -0.089 4.089 14 H 0.048 0.952 15 C -0.111 4.111 16 C -0.129 4.129 17 C 0.094 3.906 18 N -0.597 5.597 19 C 0.485 3.515 20 O -0.587 6.587 21 C 0.090 3.910 22 N -0.495 5.495 23 C 0.423 3.577 24 O -0.432 6.432 25 N -0.338 5.338 26 N -0.342 5.342 27 C 0.427 3.573 28 O -0.436 6.436 29 C 0.131 3.869 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.431 0.569 44 H 0.437 0.563 45 H 0.044 0.956 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 4.574 -28.124 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.271 4.271 8 N -0.624 5.624 9 Si 0.798 3.202 10 H -0.201 1.201 11 H -0.228 1.228 12 H -0.203 1.203 13 C -0.109 4.109 14 H 0.066 0.934 15 C -0.149 4.149 16 C -0.167 4.167 17 C -0.027 4.027 18 N -0.330 5.330 19 C 0.273 3.727 20 O -0.467 6.467 21 C -0.035 4.035 22 N -0.215 5.215 23 C 0.112 3.888 24 O -0.235 6.235 25 N -0.182 5.182 26 N -0.186 5.186 27 C 0.116 3.884 28 O -0.240 6.240 29 C 0.008 3.992 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.185 0.815 42 H 0.188 0.812 43 H 0.293 0.707 44 H 0.300 0.700 45 H 0.063 0.937 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.713 3.318 -27.192 27.403 hybrid contribution -0.797 0.865 1.805 2.154 sum -0.084 4.183 -25.387 25.729 Atomic orbital electron populations 1.22328 0.97544 1.00480 1.01017 1.20503 0.92937 0.95041 0.85242 0.93435 1.42696 1.78415 1.10083 1.06574 1.19589 1.34563 0.94143 0.88337 0.90385 1.25555 1.03253 0.96727 1.01571 1.69855 1.52840 1.10493 1.29241 0.85272 0.78060 0.77276 0.79559 1.20123 1.22790 1.20293 1.21516 0.93708 0.99518 0.96196 0.93385 1.21637 1.01714 0.99406 0.92153 1.21941 0.94507 1.01543 0.98712 1.22312 0.95235 1.01351 0.83769 1.48243 1.43013 1.32943 1.08753 1.21431 0.79542 0.80061 0.91706 1.90860 1.58568 1.61602 1.35643 1.22167 0.96224 0.90376 0.94753 1.46667 1.07483 1.08900 1.58414 1.21320 0.79446 0.89778 0.98276 1.84836 1.68586 1.31383 1.38655 1.78212 1.19042 0.98146 1.22782 1.78220 0.94932 1.21252 1.24217 1.21309 0.88195 0.80796 0.98109 1.85033 1.21456 1.79215 1.38256 1.21231 0.94685 0.97830 0.85462 0.94663 0.94937 0.89892 0.80253 0.94430 0.90555 0.90244 0.86833 0.91881 0.88825 0.86092 0.81453 0.81246 0.70724 0.69964 0.93693 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.17 6.28 2.48 44.99 0.11 6.39 16 3 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 4 N -0.74 -37.39 4.52 -322.93 -1.46 -38.85 16 5 C -0.23 -13.13 9.93 84.03 0.83 -12.30 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 8 N -0.97 -63.05 13.06 21.65 0.28 -62.76 16 9 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 C -0.09 -2.56 1.96 -10.86 -0.02 -2.58 16 14 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 15 C -0.11 -1.86 4.85 30.62 0.15 -1.71 16 16 C -0.13 -1.19 6.08 30.67 0.19 -1.01 16 17 C 0.09 0.79 6.35 86.36 0.55 1.34 16 18 N -0.60 -12.65 2.98 -819.73 -2.44 -15.09 16 19 C 0.49 11.99 7.77 87.66 0.68 12.67 16 20 O -0.59 -23.31 15.84 -3.04 -0.05 -23.36 16 21 C 0.09 1.13 4.84 85.63 0.41 1.54 16 22 N -0.49 -10.52 2.25 -759.25 -1.71 -12.22 16 23 C 0.42 10.44 9.15 179.72 1.65 12.09 16 24 O -0.43 -7.56 13.57 -89.46 -1.21 -8.78 16 25 N -0.34 -10.82 12.72 -173.66 -2.21 -13.03 16 26 N -0.34 -11.04 12.72 -173.66 -2.21 -13.25 16 27 C 0.43 10.76 9.15 179.71 1.65 12.40 16 28 O -0.44 -8.08 13.58 -89.39 -1.21 -9.30 16 29 C 0.13 4.12 5.45 86.22 0.47 4.59 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.97 6.40 -2.38 -0.02 1.96 16 33 H 0.37 20.92 7.61 -92.71 -0.71 20.22 16 34 H 0.25 15.73 8.31 -92.70 -0.77 14.96 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.24 6.36 -2.39 -0.02 1.23 16 37 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.12 0.01 5.93 -2.39 -0.01 -0.01 16 41 H 0.17 0.64 7.69 -2.38 -0.02 0.62 16 42 H 0.17 0.73 7.94 -2.39 -0.02 0.72 16 43 H 0.43 4.89 9.06 -74.06 -0.67 4.22 16 44 H 0.44 1.65 9.06 -74.06 -0.67 0.98 16 45 H 0.04 2.01 6.50 -2.39 -0.02 1.99 16 46 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -96.41 380.68 -3.40 -99.81 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.99 Total: 22.38 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 7.79 Total: 24.81 kcal Atomic # 7 Polarization: -145.47 SS G_CDS: -9.74 Total: -155.22 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -2.48 Total: -41.43 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -96.41 -3.40 -99.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667351944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.468 kcal (2) G-P(sol) polarization free energy of solvation -96.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds