Wall clock time and date at job start Tue Mar 31 2020 23:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47373 * 2 1 4 4 C 1.52990 * 109.47141 * 120.00606 * 2 1 3 5 5 N 1.46507 * 109.47418 * 174.99853 * 4 2 1 6 6 C 1.46502 * 119.99681 * 270.00098 * 5 4 2 7 7 C 1.36934 * 120.00031 * 89.99501 * 5 4 2 8 8 H 1.08000 * 120.00198 * 23.67426 * 7 5 4 9 9 C 1.38816 * 120.00059 * 203.67696 * 7 5 4 10 10 N 1.31622 * 119.99761 * 11.22236 * 9 7 5 11 11 Si 1.86797 * 120.00027 * 191.22889 * 9 7 5 12 12 H 1.48502 * 109.46898 * 60.00022 * 11 9 7 13 13 H 1.48509 * 109.47030 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47129 * 299.99852 * 11 9 7 15 15 N 1.46503 * 109.46522 * 240.00398 * 2 1 3 16 16 C 1.34779 * 120.00251 * 85.00101 * 15 2 1 17 17 O 1.21571 * 119.99562 * 0.02562 * 16 15 2 18 18 C 1.47705 * 119.99939 * 179.97438 * 16 15 2 19 19 C 1.40194 * 120.45627 * 179.97438 * 18 16 15 20 20 C 1.38051 * 118.38198 * 179.75504 * 19 18 16 21 21 C 1.39505 * 119.21445 * 0.53509 * 20 19 18 22 22 C 1.48219 * 119.57385 * 179.73185 * 21 20 19 23 23 C 1.39423 * 120.13296 * 179.72836 * 22 21 20 24 24 C 1.38003 * 119.87263 * 179.97438 * 23 22 21 25 25 C 1.38337 * 120.12411 * 0.02562 * 24 23 22 26 26 C 1.38338 * 120.26583 * 359.97438 * 25 24 23 27 27 C 1.37995 * 120.13156 * 0.02562 * 26 25 24 28 28 N 1.32778 * 120.85677 * 359.45338 * 21 20 19 29 29 C 1.31519 * 121.76644 * 0.27283 * 28 21 20 30 30 H 1.09003 * 109.46867 * 299.99883 * 1 2 3 31 31 H 1.09002 * 109.47106 * 59.99367 * 1 2 3 32 32 H 1.08994 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47207 * 294.99313 * 4 2 1 34 34 H 1.08998 * 109.47526 * 54.99533 * 4 2 1 35 35 H 1.09002 * 109.47283 * 94.61648 * 6 5 4 36 36 H 1.08996 * 109.46948 * 214.61470 * 6 5 4 37 37 H 1.08999 * 109.47046 * 334.61730 * 6 5 4 38 38 H 0.97001 * 120.00018 * 180.02562 * 10 9 7 39 39 H 0.96996 * 119.99854 * 264.99538 * 15 2 1 40 40 H 1.08004 * 120.80865 * 0.05099 * 19 18 16 41 41 H 1.07998 * 120.39106 * 180.28309 * 20 19 18 42 42 H 1.08003 * 120.06672 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.93448 * 179.72305 * 24 23 22 44 44 H 1.08004 * 119.87049 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.93973 * 180.02562 * 26 25 24 46 46 H 1.07992 * 120.06856 * 180.02562 * 27 26 25 47 47 H 1.07996 * 119.64811 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1646 1.7239 8 1 3.8838 0.8062 2.4971 9 6 5.5797 0.3448 1.2708 10 7 5.9915 -0.2795 0.1878 11 14 6.7442 1.4730 2.1984 12 1 6.9140 0.9753 3.5872 13 1 8.0628 1.4931 1.5155 14 1 6.1817 2.8469 2.2302 15 7 2.0182 -0.6906 -1.1963 16 6 2.1469 -0.0182 -2.3573 17 8 1.8583 1.1615 -2.4116 18 6 2.6397 -0.7143 -3.5632 19 6 2.7767 -0.0244 -4.7759 20 6 3.2460 -0.7157 -5.8748 21 6 3.5551 -2.0700 -5.7462 22 6 4.0538 -2.8214 -6.9224 23 6 4.3716 -4.1739 -6.8056 24 6 4.8350 -4.8685 -7.9044 25 6 4.9849 -4.2251 -9.1198 26 6 4.6712 -2.8833 -9.2419 27 6 4.2069 -2.1784 -8.1502 28 7 3.4135 -2.6933 -4.5824 29 6 2.9748 -2.0687 -3.5113 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7518 -0.1584 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 4.3546 -1.7638 -0.4801 36 1 5.0463 -2.2399 1.0893 37 1 3.4419 -2.8397 0.6052 38 1 6.8998 -0.1539 -0.1286 39 1 2.2489 -1.6317 -1.1528 40 1 2.5259 1.0237 -4.8474 41 1 3.3684 -0.2150 -6.8238 42 1 4.2554 -4.6771 -5.8571 43 1 5.0858 -5.9150 -7.8139 44 1 5.3483 -4.7726 -9.9770 45 1 4.7898 -2.3864 -10.1934 46 1 3.9619 -1.1311 -8.2467 47 1 2.8724 -2.6093 -2.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669904492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:58 Heat of formation + Delta-G solvation = 49.917706 kcal Electronic energy + Delta-G solvation = -28713.772401 eV Core-core repulsion = 24862.169223 eV Total energy + Delta-G solvation = -3851.603177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.61790 -39.32385 -38.41674 -36.35572 -34.08213 -33.11586 -32.55174 -31.35817 -31.03764 -30.42986 -29.06995 -26.19953 -25.63401 -24.86188 -24.00481 -22.34843 -22.03759 -21.45224 -20.46581 -19.94811 -18.03012 -17.21058 -16.89073 -16.45831 -16.22408 -15.31299 -14.93040 -14.83449 -14.65695 -14.54236 -14.42205 -13.99112 -13.66342 -13.59200 -13.46843 -13.20906 -13.02465 -12.87704 -12.71040 -12.38097 -12.14239 -11.95479 -11.46546 -11.45045 -11.26682 -11.11769 -10.84309 -10.78671 -10.56856 -10.23264 -10.00380 -9.94491 -9.89119 -9.81698 -9.77795 -9.26438 -9.13970 -8.63250 -8.46197 -8.28429 -6.75707 -5.72876 -3.19566 0.26283 1.22028 1.25549 1.49319 3.15629 3.40058 3.45341 3.45604 3.59115 3.71509 3.96211 4.12658 4.46537 4.50728 4.75164 4.78819 4.82790 4.91982 4.95779 5.09346 5.21113 5.33404 5.35241 5.42264 5.48082 5.51639 5.65400 5.73319 5.82027 5.82975 5.97557 5.99836 6.08225 6.12372 6.22522 6.23277 6.29730 6.39700 6.45846 6.51837 6.56994 6.61689 6.75995 6.86047 7.11393 7.29902 7.64085 7.80060 7.84454 8.02992 8.38827 8.70389 9.22393 9.84665 10.32740 11.32042 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002875 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.322754 B = 9735.465327 C =10726.766554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.087 0.913 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.904 3.096 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.690 5.690 16 C 0.565 3.435 17 O -0.546 6.546 18 C -0.172 4.172 19 C -0.017 4.017 20 C -0.172 4.172 21 C 0.179 3.821 22 C -0.049 4.049 23 C -0.077 4.077 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.100 4.100 28 N -0.479 5.479 29 C 0.148 3.852 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.252 0.748 39 H 0.394 0.606 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -7.897 -16.045 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.015 3.985 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.734 3.266 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.339 5.339 16 C 0.351 3.649 17 O -0.425 6.425 18 C -0.177 4.177 19 C -0.043 4.043 20 C -0.192 4.192 21 C 0.043 3.957 22 C -0.050 4.050 23 C -0.095 4.095 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.119 4.119 28 N -0.187 5.187 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.062 0.938 39 H 0.229 0.771 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.750 -7.952 -16.029 19.124 hybrid contribution 0.807 1.180 0.387 1.481 sum -5.943 -6.772 -15.642 18.052 Atomic orbital electron populations 1.22157 0.96719 1.01177 1.01781 1.21930 0.91741 0.99264 0.86133 0.89444 1.21214 0.85844 0.97261 0.94307 1.43882 0.99022 1.20872 1.68148 1.20870 0.94658 0.85050 0.97897 1.19111 0.94624 1.10697 1.14312 0.91485 1.25028 0.98901 0.99016 0.96307 1.70020 1.17286 1.45515 1.21960 0.86353 0.80335 0.80770 0.79151 1.21115 1.21707 1.20961 1.45714 1.65400 1.13614 1.09148 1.17822 0.77770 0.86376 0.82954 1.90725 1.51303 1.15300 1.85203 1.21178 1.04933 0.95864 0.95768 1.21641 0.91490 1.00670 0.90480 1.21994 1.02346 0.94718 1.00098 1.19888 0.93922 0.90547 0.91330 1.18550 1.01141 0.93819 0.91445 1.21411 0.95600 0.93223 0.99314 1.21178 1.00218 1.00232 0.92878 1.21285 0.99117 0.94869 0.97698 1.21049 1.00181 0.94615 0.98537 1.21272 0.98672 1.00034 0.91886 1.67586 1.13475 1.39083 0.98597 1.22898 0.91089 0.90818 0.96367 0.91953 0.92945 0.93123 0.92143 0.93946 0.95072 0.93768 0.98656 0.93806 0.77085 0.83433 0.84151 0.84487 0.85691 0.86000 0.85721 0.85462 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.96 16 3 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 5 N -0.60 -14.16 2.78 -181.12 -0.50 -14.66 16 6 C 0.16 3.66 7.60 59.85 0.46 4.12 16 7 C -0.26 -6.94 9.66 -15.06 -0.15 -7.08 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -25.99 10.66 55.49 0.59 -25.40 16 11 Si 0.90 22.10 29.57 -169.99 -5.03 17.07 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 N -0.69 -12.50 4.37 -54.80 -0.24 -12.74 16 16 C 0.57 10.92 7.74 -12.39 -0.10 10.83 16 17 O -0.55 -12.15 16.07 5.30 0.09 -12.06 16 18 C -0.17 -2.88 5.89 -104.78 -0.62 -3.50 16 19 C -0.02 -0.25 9.70 -38.92 -0.38 -0.62 16 20 C -0.17 -2.19 9.44 -39.18 -0.37 -2.56 16 21 C 0.18 2.48 6.73 -82.88 -0.56 1.92 16 22 C -0.05 -0.59 5.88 -104.91 -0.62 -1.21 16 23 C -0.08 -0.88 9.57 -39.23 -0.38 -1.25 16 24 C -0.13 -1.18 10.03 -39.63 -0.40 -1.58 16 25 C -0.11 -0.92 10.04 -39.51 -0.40 -1.32 16 26 C -0.13 -1.06 10.03 -39.63 -0.40 -1.46 16 27 C -0.10 -0.98 9.42 -39.22 -0.37 -1.35 16 28 N -0.48 -7.28 9.40 -9.46 -0.09 -7.37 16 29 C 0.15 2.29 10.70 -17.17 -0.18 2.10 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 34 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 35 H 0.03 0.76 6.90 -51.93 -0.36 0.40 16 36 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 37 H -0.01 -0.10 7.84 -51.93 -0.41 -0.50 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.39 6.51 5.22 -40.82 -0.21 6.29 16 40 H 0.15 2.08 7.73 -52.48 -0.41 1.67 16 41 H 0.14 1.32 6.17 -52.49 -0.32 1.00 16 42 H 0.14 1.60 7.53 -52.48 -0.40 1.20 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 46 H 0.13 1.00 6.17 -52.49 -0.32 0.68 16 47 H 0.16 2.22 6.41 -52.49 -0.34 1.89 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -32.90 388.93 -10.17 -43.07 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.44 Total: 6.48 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.40 Total: -0.25 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.24 Total: -60.18 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.90 -10.17 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669904492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.987 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds