Wall clock time and date at job start Tue Mar 31 2020 23:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47373 * 2 1 4 4 C 1.52990 * 109.47141 * 120.00606 * 2 1 3 5 5 N 1.46507 * 109.47418 * 174.99853 * 4 2 1 6 6 C 1.46502 * 119.99681 * 270.00098 * 5 4 2 7 7 C 1.36934 * 120.00031 * 89.99501 * 5 4 2 8 8 H 1.08000 * 120.00198 * 23.67426 * 7 5 4 9 9 C 1.38816 * 120.00059 * 203.67696 * 7 5 4 10 10 N 1.31622 * 119.99761 * 11.22236 * 9 7 5 11 11 Si 1.86797 * 120.00027 * 191.22889 * 9 7 5 12 12 H 1.48502 * 109.46898 * 60.00022 * 11 9 7 13 13 H 1.48509 * 109.47030 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47129 * 299.99852 * 11 9 7 15 15 N 1.46503 * 109.46522 * 240.00398 * 2 1 3 16 16 C 1.34779 * 120.00251 * 85.00101 * 15 2 1 17 17 O 1.21571 * 119.99562 * 0.02562 * 16 15 2 18 18 C 1.47705 * 119.99939 * 179.97438 * 16 15 2 19 19 C 1.40194 * 120.45627 * 179.97438 * 18 16 15 20 20 C 1.38051 * 118.38198 * 179.75504 * 19 18 16 21 21 C 1.39505 * 119.21445 * 0.53509 * 20 19 18 22 22 C 1.48219 * 119.57385 * 179.73185 * 21 20 19 23 23 C 1.39423 * 120.13296 * 179.72836 * 22 21 20 24 24 C 1.38003 * 119.87263 * 179.97438 * 23 22 21 25 25 C 1.38337 * 120.12411 * 0.02562 * 24 23 22 26 26 C 1.38338 * 120.26583 * 359.97438 * 25 24 23 27 27 C 1.37995 * 120.13156 * 0.02562 * 26 25 24 28 28 N 1.32778 * 120.85677 * 359.45338 * 21 20 19 29 29 C 1.31519 * 121.76644 * 0.27283 * 28 21 20 30 30 H 1.09003 * 109.46867 * 299.99883 * 1 2 3 31 31 H 1.09002 * 109.47106 * 59.99367 * 1 2 3 32 32 H 1.08994 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47207 * 294.99313 * 4 2 1 34 34 H 1.08998 * 109.47526 * 54.99533 * 4 2 1 35 35 H 1.09002 * 109.47283 * 94.61648 * 6 5 4 36 36 H 1.08996 * 109.46948 * 214.61470 * 6 5 4 37 37 H 1.08999 * 109.47046 * 334.61730 * 6 5 4 38 38 H 0.97001 * 120.00018 * 180.02562 * 10 9 7 39 39 H 0.96996 * 119.99854 * 264.99538 * 15 2 1 40 40 H 1.08004 * 120.80865 * 0.05099 * 19 18 16 41 41 H 1.07998 * 120.39106 * 180.28309 * 20 19 18 42 42 H 1.08003 * 120.06672 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.93448 * 179.72305 * 24 23 22 44 44 H 1.08004 * 119.87049 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.93973 * 180.02562 * 26 25 24 46 46 H 1.07992 * 120.06856 * 180.02562 * 27 26 25 47 47 H 1.07996 * 119.64811 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1258 -1.9921 0.5609 7 6 4.2799 0.1646 1.7239 8 1 3.8838 0.8062 2.4971 9 6 5.5797 0.3448 1.2708 10 7 5.9915 -0.2795 0.1878 11 14 6.7442 1.4730 2.1984 12 1 6.9140 0.9753 3.5872 13 1 8.0628 1.4931 1.5155 14 1 6.1817 2.8469 2.2302 15 7 2.0182 -0.6906 -1.1963 16 6 2.1469 -0.0182 -2.3573 17 8 1.8583 1.1615 -2.4116 18 6 2.6397 -0.7143 -3.5632 19 6 2.7767 -0.0244 -4.7759 20 6 3.2460 -0.7157 -5.8748 21 6 3.5551 -2.0700 -5.7462 22 6 4.0538 -2.8214 -6.9224 23 6 4.3716 -4.1739 -6.8056 24 6 4.8350 -4.8685 -7.9044 25 6 4.9849 -4.2251 -9.1198 26 6 4.6712 -2.8833 -9.2419 27 6 4.2069 -2.1784 -8.1502 28 7 3.4135 -2.6933 -4.5824 29 6 2.9748 -2.0687 -3.5113 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7518 -0.1584 2.1369 34 1 1.6054 -1.7199 1.2950 35 1 4.3546 -1.7638 -0.4801 36 1 5.0463 -2.2399 1.0893 37 1 3.4419 -2.8397 0.6052 38 1 6.8998 -0.1539 -0.1286 39 1 2.2489 -1.6317 -1.1528 40 1 2.5259 1.0237 -4.8474 41 1 3.3684 -0.2150 -6.8238 42 1 4.2554 -4.6771 -5.8571 43 1 5.0858 -5.9150 -7.8139 44 1 5.3483 -4.7726 -9.9770 45 1 4.7898 -2.3864 -10.1934 46 1 3.9619 -1.1311 -8.2467 47 1 2.8724 -2.6093 -2.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669904492.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:57 Heat of formation + Delta-G solvation = 31.140960 kcal Electronic energy + Delta-G solvation = -28714.586621 eV Core-core repulsion = 24862.169223 eV Total energy + Delta-G solvation = -3852.417398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77678 -40.51841 -39.42748 -38.04110 -35.81715 -34.20294 -33.66267 -33.05318 -31.94526 -31.77565 -30.13826 -27.98494 -27.40713 -25.98442 -25.03003 -23.72716 -22.98838 -22.66902 -21.88597 -21.40165 -19.19340 -18.77656 -18.29077 -17.74599 -17.04581 -16.87093 -16.66929 -16.17435 -15.79285 -15.56423 -15.46798 -15.31452 -15.16678 -15.01418 -14.66950 -14.49239 -14.31596 -14.07186 -13.79283 -13.59528 -13.39979 -13.35934 -13.08616 -12.81565 -12.66973 -12.58239 -12.31202 -12.18818 -12.06658 -11.98583 -11.84565 -11.71203 -11.21216 -11.09033 -10.78274 -10.63603 -10.53738 -9.99662 -9.85293 -9.26444 -8.72284 -7.81789 -5.28562 -0.78633 0.13689 0.50794 0.57696 1.43803 1.44654 1.50652 1.86748 2.24808 2.50700 2.68687 2.94896 3.08820 3.32332 3.49071 3.66806 3.73229 3.76500 3.90590 4.02966 4.14506 4.18365 4.19299 4.33403 4.41113 4.49766 4.52603 4.59989 4.65321 4.77218 4.82728 4.83788 4.89971 4.98300 5.01290 5.03250 5.18013 5.20323 5.35658 5.38046 5.38639 5.57392 5.59965 5.62621 5.64657 5.66021 5.77939 6.05999 6.34208 6.56854 6.73213 7.17824 7.23920 7.89931 8.30668 9.19830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002875 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.322754 B = 9735.465327 C =10726.766554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 H 0.040 0.960 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.172 3.828 7 C -0.259 4.259 8 H 0.068 0.932 9 C -0.050 4.050 10 N -0.929 5.929 11 Si 0.959 3.041 12 H -0.276 1.276 13 H -0.298 1.298 14 H -0.283 1.283 15 N -0.686 5.686 16 C 0.560 3.440 17 O -0.586 6.586 18 C -0.199 4.199 19 C -0.023 4.023 20 C -0.164 4.164 21 C 0.178 3.822 22 C -0.078 4.078 23 C -0.095 4.095 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.126 4.126 27 C -0.101 4.101 28 N -0.495 5.495 29 C 0.146 3.854 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.037 0.963 38 H 0.242 0.758 39 H 0.402 0.598 40 H 0.150 0.850 41 H 0.177 0.823 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.155 0.845 46 H 0.146 0.854 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -8.996 -17.748 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.058 0.942 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.390 4.390 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.202 1.202 13 H -0.225 1.225 14 H -0.209 1.209 15 N -0.335 5.335 16 C 0.347 3.653 17 O -0.469 6.469 18 C -0.204 4.204 19 C -0.049 4.049 20 C -0.184 4.184 21 C 0.042 3.958 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.151 4.151 25 C -0.123 4.123 26 C -0.144 4.144 27 C -0.120 4.120 28 N -0.203 5.203 29 C -0.013 4.013 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.239 0.761 40 H 0.168 0.832 41 H 0.194 0.806 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.164 0.836 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.345 -9.079 -17.702 21.207 hybrid contribution 0.967 1.425 0.801 1.899 sum -6.378 -7.653 -16.902 19.619 Atomic orbital electron populations 1.22027 0.93390 1.02965 1.02087 1.21764 0.94232 0.96566 0.86036 0.94163 1.21405 0.83189 0.99389 0.94569 1.44089 1.00909 1.20433 1.67957 1.20650 0.94377 0.86186 0.96033 1.19426 0.95047 1.10643 1.13883 0.91425 1.25699 1.00537 1.00915 0.97366 1.70193 1.16814 1.47165 1.23347 0.85463 0.78192 0.79171 0.78324 1.20167 1.22467 1.20912 1.45709 1.65006 1.13921 1.08836 1.18248 0.77111 0.86049 0.83880 1.90685 1.53300 1.16944 1.85949 1.21073 1.07324 0.96557 0.95495 1.21807 0.91589 1.00938 0.90602 1.22306 1.00954 0.94275 1.00821 1.20397 0.92626 0.91255 0.91503 1.18660 1.03266 0.94267 0.91715 1.21466 0.96746 0.93430 0.99753 1.21442 0.99741 1.01212 0.92691 1.21711 0.97470 0.95103 0.98066 1.21456 0.98917 0.94785 0.99246 1.21550 0.98109 1.01063 0.91293 1.67638 1.14162 1.39442 0.99107 1.22991 0.90896 0.90423 0.96979 0.90154 0.94155 0.90501 0.91422 0.90424 0.97107 0.97027 0.94416 0.94851 0.76138 0.83224 0.80561 0.85834 0.83835 0.83033 0.82750 0.83626 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 2 C 0.12 4.47 2.88 44.99 0.13 4.60 16 3 H 0.04 1.87 7.58 -2.39 -0.02 1.85 16 4 C 0.14 5.16 5.33 86.37 0.46 5.62 16 5 N -0.61 -28.91 2.78 -726.93 -2.02 -30.93 16 6 C 0.17 7.90 7.60 127.77 0.97 8.87 16 7 C -0.26 -14.08 9.66 84.03 0.81 -13.27 16 8 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 9 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 10 N -0.93 -55.09 10.66 21.65 0.23 -54.86 16 11 Si 0.96 46.32 29.57 68.60 2.03 48.35 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 15 N -0.69 -25.23 4.37 -445.55 -1.95 -27.17 16 16 C 0.56 22.52 7.74 86.74 0.67 23.19 16 17 O -0.59 -27.40 16.07 -3.94 -0.06 -27.46 16 18 C -0.20 -6.91 5.89 -19.97 -0.12 -7.02 16 19 C -0.02 -0.70 9.70 22.70 0.22 -0.48 16 20 C -0.16 -4.08 9.44 22.53 0.21 -3.86 16 21 C 0.18 4.90 6.73 41.96 0.28 5.18 16 22 C -0.08 -1.82 5.88 -20.05 -0.12 -1.94 16 23 C -0.10 -2.13 9.57 22.50 0.22 -1.91 16 24 C -0.13 -2.21 10.03 22.24 0.22 -1.99 16 25 C -0.11 -1.40 10.04 22.32 0.22 -1.17 16 26 C -0.13 -1.69 10.03 22.24 0.22 -1.47 16 27 C -0.10 -1.74 9.42 22.50 0.21 -1.53 16 28 N -0.49 -15.36 9.40 -183.84 -1.73 -17.09 16 29 C 0.15 4.67 10.70 85.07 0.91 5.58 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 34 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 35 H 0.01 0.54 6.90 -2.39 -0.02 0.52 16 36 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 37 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 38 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.40 13.25 5.22 -92.71 -0.48 12.77 16 40 H 0.15 4.35 7.73 -2.91 -0.02 4.33 16 41 H 0.18 2.92 6.17 -2.91 -0.02 2.90 16 42 H 0.12 2.98 7.53 -2.91 -0.02 2.96 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 45 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 46 H 0.15 1.83 6.17 -2.91 -0.02 1.81 16 47 H 0.17 4.81 6.41 -2.91 -0.02 4.79 16 Total: -1.00 -74.50 388.93 3.66 -70.84 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.51 Total: 25.72 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.65 Total: 12.60 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -5.46 Total: -130.05 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.06 Total: -27.46 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.50 3.66 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669904492.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.981 kcal (2) G-P(sol) polarization free energy of solvation -74.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds