Wall clock time and date at job start Tue Mar 31 2020 23:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46897 * 239.99677 * 2 1 3 5 5 N 1.46494 * 109.47023 * 185.00243 * 4 2 1 6 6 C 1.46501 * 120.00375 * 270.00048 * 5 4 2 7 7 C 1.36939 * 120.00093 * 90.00351 * 5 4 2 8 8 H 1.07999 * 120.00191 * 20.29206 * 7 5 4 9 9 C 1.38814 * 119.99810 * 200.29180 * 7 5 4 10 10 N 1.31619 * 120.00328 * 15.02382 * 9 7 5 11 11 Si 1.86806 * 119.99781 * 195.01894 * 9 7 5 12 12 H 1.48496 * 109.46805 * 85.01190 * 11 9 7 13 13 H 1.48504 * 109.46999 * 205.01245 * 11 9 7 14 14 H 1.48493 * 109.47290 * 325.01029 * 11 9 7 15 15 N 1.46502 * 109.47024 * 120.00208 * 2 1 3 16 16 C 1.34777 * 119.99489 * 274.99562 * 15 2 1 17 17 O 1.21571 * 120.00431 * 0.02562 * 16 15 2 18 18 C 1.47718 * 119.99625 * 179.97438 * 16 15 2 19 19 C 1.40185 * 120.45440 * 180.02562 * 18 16 15 20 20 C 1.38049 * 118.38289 * 180.30164 * 19 18 16 21 21 C 1.39513 * 119.20916 * 359.45314 * 20 19 18 22 22 C 1.48226 * 119.56783 * 180.25718 * 21 20 19 23 23 C 1.39423 * 120.13286 * 0.02562 * 22 21 20 24 24 C 1.37988 * 119.87017 * 179.70004 * 23 22 21 25 25 C 1.38344 * 120.12985 * 0.57693 * 24 23 22 26 26 C 1.38344 * 120.26091 * 359.72249 * 25 24 23 27 27 C 1.37993 * 120.12820 * 359.97438 * 26 25 24 28 28 N 1.32767 * 120.85970 * 0.56292 * 21 20 19 29 29 C 1.31519 * 121.77141 * 359.71377 * 28 21 20 30 30 H 1.09006 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46916 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.47085 * 59.99745 * 1 2 3 33 33 H 1.09004 * 109.47130 * 305.00398 * 4 2 1 34 34 H 1.08997 * 109.47192 * 65.00233 * 4 2 1 35 35 H 1.09001 * 109.47207 * 95.10124 * 6 5 4 36 36 H 1.08998 * 109.47778 * 215.11171 * 6 5 4 37 37 H 1.09012 * 109.46930 * 335.10554 * 6 5 4 38 38 H 0.96994 * 120.00405 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00030 * 94.99784 * 15 2 1 40 40 H 1.07997 * 120.81575 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.39509 * 179.70104 * 20 19 18 42 42 H 1.07999 * 120.06427 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.93679 * 180.31747 * 24 23 22 44 44 H 1.07995 * 119.86929 * 179.74003 * 25 24 23 45 45 H 1.07992 * 119.93425 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.06377 * 180.02562 * 27 26 25 47 47 H 1.07998 * 119.65847 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8265 -1.1905 6 6 4.3343 0.2338 -1.7612 7 6 4.0848 -1.9160 -0.6023 8 1 3.5227 -2.8299 -0.4788 9 6 5.4003 -1.8459 -0.1647 10 7 5.9904 -0.6762 -0.0383 11 14 6.3331 -3.4117 0.2450 12 1 6.9255 -3.9737 -0.9952 13 1 7.4147 -3.1041 1.2150 14 1 5.4007 -4.4018 0.8410 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8576 1.1612 2.4118 18 6 2.6389 -0.7147 3.5633 19 6 2.7760 -0.0248 4.7759 20 6 3.2454 -0.7161 5.8748 21 6 3.5544 -2.0704 5.7461 22 6 4.0536 -2.8217 6.9223 23 6 4.2122 -2.1775 8.1486 24 6 4.6714 -2.8836 9.2416 25 6 4.9857 -4.2254 9.1194 26 6 4.8363 -4.8685 7.9037 27 6 4.3720 -4.1742 6.8053 28 7 3.4129 -2.6937 4.5824 29 6 2.9741 -2.0692 3.5113 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6052 -1.7199 -1.2951 34 1 1.7516 -0.1584 -2.1369 35 1 4.6152 0.9369 -0.9771 36 1 5.2330 -0.2047 -2.1951 37 1 3.7755 0.7584 -2.5364 38 1 6.9095 -0.6271 0.2678 39 1 2.2490 -1.6318 1.1526 40 1 2.5248 1.0231 4.8477 41 1 3.3682 -0.2153 6.8238 42 1 3.9710 -1.1291 8.2441 43 1 4.7898 -2.3869 10.1932 44 1 5.3487 -4.7729 9.9765 45 1 5.0836 -5.9159 7.8142 46 1 4.2554 -4.6775 5.8568 47 1 2.8716 -2.6097 2.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669904494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:02 Heat of formation + Delta-G solvation = 49.100939 kcal Electronic energy + Delta-G solvation = -29045.794367 eV Core-core repulsion = 25194.155772 eV Total energy + Delta-G solvation = -3851.638595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.52098 -39.24393 -38.33971 -36.32307 -34.05018 -33.03678 -32.46373 -31.41465 -30.97996 -30.33486 -28.96817 -26.20636 -25.63477 -24.78986 -23.91782 -22.27303 -21.99253 -21.46444 -20.45318 -19.76351 -17.97307 -17.24369 -16.60129 -16.50107 -16.15034 -15.29658 -14.94612 -14.73110 -14.56877 -14.50127 -14.35997 -13.92844 -13.67382 -13.55523 -13.38461 -13.10588 -12.96146 -12.83279 -12.65218 -12.33930 -12.14760 -11.89480 -11.42782 -11.40161 -11.33078 -11.20907 -10.85830 -10.71475 -10.43595 -10.29184 -10.07331 -9.87462 -9.84868 -9.74377 -9.68720 -9.16828 -9.08733 -8.59351 -8.42905 -8.19320 -6.83761 -5.77529 -3.21994 0.34435 1.27368 1.35545 1.56403 3.23841 3.34859 3.41360 3.44325 3.68322 3.80429 4.06136 4.22121 4.44760 4.54500 4.80494 4.87197 4.89751 5.01218 5.04399 5.18717 5.28676 5.32055 5.42484 5.46637 5.48772 5.60507 5.64057 5.80388 5.84926 5.88038 5.95728 6.06957 6.13824 6.21376 6.21749 6.29596 6.35186 6.43033 6.46709 6.49980 6.66935 6.71897 6.81700 6.85452 7.19751 7.35135 7.66647 7.76449 7.95984 8.19220 8.31845 8.81732 9.16474 9.81488 10.30632 11.26344 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.003569 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.341368 B = 7844.379787 C = 9463.793201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.263 4.263 8 H 0.067 0.933 9 C 0.011 3.989 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.276 1.276 15 N -0.679 5.679 16 C 0.564 3.436 17 O -0.556 6.556 18 C -0.171 4.171 19 C -0.018 4.018 20 C -0.174 4.174 21 C 0.177 3.823 22 C -0.047 4.047 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.127 4.127 27 C -0.078 4.078 28 N -0.480 5.480 29 C 0.151 3.849 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.043 0.957 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.403 0.597 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.137 0.863 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -3.838 13.706 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.392 4.392 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.202 1.202 15 N -0.328 5.328 16 C 0.350 3.650 17 O -0.437 6.437 18 C -0.176 4.176 19 C -0.044 4.044 20 C -0.194 4.194 21 C 0.041 3.959 22 C -0.048 4.048 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.145 4.145 27 C -0.096 4.096 28 N -0.188 5.188 29 C -0.008 4.008 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.063 0.937 39 H 0.240 0.760 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.155 0.845 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.459 -3.849 13.648 15.582 hybrid contribution 0.761 -0.280 0.281 0.858 sum -5.698 -4.129 13.929 15.605 Atomic orbital electron populations 1.22161 0.96716 1.01356 1.01647 1.21892 0.91889 0.98480 0.86760 0.90353 1.21195 0.85949 0.97972 0.93581 1.43903 0.98888 1.22674 1.66565 1.20799 0.92907 0.90425 0.94039 1.19055 0.96008 0.89899 1.34228 0.91496 1.24914 0.98477 0.96084 0.99425 1.70082 1.12775 1.21805 1.49243 0.86470 0.80241 0.83323 0.77793 1.21444 1.21824 1.20157 1.45654 1.64366 1.14298 1.08459 1.17828 0.77773 0.86307 0.83098 1.90701 1.52060 1.15466 1.85435 1.21173 1.04882 0.95859 0.95719 1.21614 0.91724 1.00581 0.90531 1.21972 1.02616 0.94710 1.00058 1.19897 0.94064 0.90570 0.91366 1.18564 1.00967 0.93785 0.91496 1.21259 0.98764 0.99999 0.91884 1.21039 1.00287 0.94601 0.98491 1.21274 0.99224 0.94894 0.97656 1.21174 1.00226 1.00216 0.92886 1.21431 0.95543 0.93311 0.99335 1.67599 1.13431 1.39198 0.98611 1.23011 0.90491 0.90950 0.96369 0.92934 0.92915 0.92122 0.93243 0.92803 0.95295 0.93865 0.98414 0.93717 0.76017 0.83523 0.84247 0.85471 0.85747 0.86029 0.85728 0.84490 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.95 16 3 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.65 5.36 -4.05 -0.02 2.63 16 5 N -0.60 -13.96 2.82 -181.12 -0.51 -14.47 16 6 C 0.16 3.93 9.02 59.85 0.54 4.47 16 7 C -0.26 -6.55 8.02 -15.06 -0.12 -6.67 16 8 H 0.07 1.60 7.86 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.06 -17.43 -0.09 0.20 16 10 N -0.90 -25.33 10.67 55.49 0.59 -24.73 16 11 Si 0.89 21.19 29.58 -169.99 -5.03 16.17 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 N -0.68 -12.90 4.44 -54.79 -0.24 -13.14 16 16 C 0.56 11.27 7.74 -12.39 -0.10 11.17 16 17 O -0.56 -12.41 16.07 5.30 0.09 -12.32 16 18 C -0.17 -3.06 5.89 -104.77 -0.62 -3.67 16 19 C -0.02 -0.29 9.70 -38.92 -0.38 -0.66 16 20 C -0.17 -2.38 9.44 -39.18 -0.37 -2.75 16 21 C 0.18 2.68 6.73 -82.88 -0.56 2.13 16 22 C -0.05 -0.63 5.88 -104.90 -0.62 -1.24 16 23 C -0.10 -1.07 9.42 -39.23 -0.37 -1.44 16 24 C -0.13 -1.16 10.03 -39.63 -0.40 -1.56 16 25 C -0.11 -1.03 10.04 -39.50 -0.40 -1.42 16 26 C -0.13 -1.32 10.03 -39.63 -0.40 -1.72 16 27 C -0.08 -0.99 9.57 -39.22 -0.38 -1.36 16 28 N -0.48 -8.16 9.40 -9.45 -0.09 -8.25 16 29 C 0.15 2.63 10.70 -17.17 -0.18 2.44 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 35 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 36 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 37 H 0.00 -0.06 7.84 -51.92 -0.41 -0.46 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.40 7.46 5.45 -40.82 -0.22 7.23 16 40 H 0.15 2.14 7.73 -52.49 -0.41 1.73 16 41 H 0.14 1.42 6.17 -52.49 -0.32 1.10 16 42 H 0.13 1.10 6.17 -52.49 -0.32 0.77 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.14 1.82 7.53 -52.49 -0.40 1.43 16 47 H 0.16 2.73 6.41 -52.49 -0.34 2.39 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -31.62 389.44 -10.09 -41.71 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.48 Total: 8.71 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -4.29 Total: 0.47 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.25 Total: -60.61 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.62 -10.09 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669904494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.810 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds