Wall clock time and date at job start Tue Mar 31 2020 23:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47237 * 2 1 4 4 C 1.52999 * 109.46897 * 239.99677 * 2 1 3 5 5 N 1.46494 * 109.47023 * 185.00243 * 4 2 1 6 6 C 1.46501 * 120.00375 * 270.00048 * 5 4 2 7 7 C 1.36939 * 120.00093 * 90.00351 * 5 4 2 8 8 H 1.07999 * 120.00191 * 20.29206 * 7 5 4 9 9 C 1.38814 * 119.99810 * 200.29180 * 7 5 4 10 10 N 1.31619 * 120.00328 * 15.02382 * 9 7 5 11 11 Si 1.86806 * 119.99781 * 195.01894 * 9 7 5 12 12 H 1.48496 * 109.46805 * 85.01190 * 11 9 7 13 13 H 1.48504 * 109.46999 * 205.01245 * 11 9 7 14 14 H 1.48493 * 109.47290 * 325.01029 * 11 9 7 15 15 N 1.46502 * 109.47024 * 120.00208 * 2 1 3 16 16 C 1.34777 * 119.99489 * 274.99562 * 15 2 1 17 17 O 1.21571 * 120.00431 * 0.02562 * 16 15 2 18 18 C 1.47718 * 119.99625 * 179.97438 * 16 15 2 19 19 C 1.40185 * 120.45440 * 180.02562 * 18 16 15 20 20 C 1.38049 * 118.38289 * 180.30164 * 19 18 16 21 21 C 1.39513 * 119.20916 * 359.45314 * 20 19 18 22 22 C 1.48226 * 119.56783 * 180.25718 * 21 20 19 23 23 C 1.39423 * 120.13286 * 0.02562 * 22 21 20 24 24 C 1.37988 * 119.87017 * 179.70004 * 23 22 21 25 25 C 1.38344 * 120.12985 * 0.57693 * 24 23 22 26 26 C 1.38344 * 120.26091 * 359.72249 * 25 24 23 27 27 C 1.37993 * 120.12820 * 359.97438 * 26 25 24 28 28 N 1.32767 * 120.85970 * 0.56292 * 21 20 19 29 29 C 1.31519 * 121.77141 * 359.71377 * 28 21 20 30 30 H 1.09006 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46916 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.47085 * 59.99745 * 1 2 3 33 33 H 1.09004 * 109.47130 * 305.00398 * 4 2 1 34 34 H 1.08997 * 109.47192 * 65.00233 * 4 2 1 35 35 H 1.09001 * 109.47207 * 95.10124 * 6 5 4 36 36 H 1.08998 * 109.47778 * 215.11171 * 6 5 4 37 37 H 1.09012 * 109.46930 * 335.10554 * 6 5 4 38 38 H 0.96994 * 120.00405 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00030 * 94.99784 * 15 2 1 40 40 H 1.07997 * 120.81575 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.39509 * 179.70104 * 20 19 18 42 42 H 1.07999 * 120.06427 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.93679 * 180.31747 * 24 23 22 44 44 H 1.07995 * 119.86929 * 179.74003 * 25 24 23 45 45 H 1.07992 * 119.93425 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.06377 * 180.02562 * 27 26 25 47 47 H 1.07998 * 119.65847 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.4999 -0.8265 -1.1905 6 6 4.3343 0.2338 -1.7612 7 6 4.0848 -1.9160 -0.6023 8 1 3.5227 -2.8299 -0.4788 9 6 5.4003 -1.8459 -0.1647 10 7 5.9904 -0.6762 -0.0383 11 14 6.3331 -3.4117 0.2450 12 1 6.9255 -3.9737 -0.9952 13 1 7.4147 -3.1041 1.2150 14 1 5.4007 -4.4018 0.8410 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8576 1.1612 2.4118 18 6 2.6389 -0.7147 3.5633 19 6 2.7760 -0.0248 4.7759 20 6 3.2454 -0.7161 5.8748 21 6 3.5544 -2.0704 5.7461 22 6 4.0536 -2.8217 6.9223 23 6 4.2122 -2.1775 8.1486 24 6 4.6714 -2.8836 9.2416 25 6 4.9857 -4.2254 9.1194 26 6 4.8363 -4.8685 7.9037 27 6 4.3720 -4.1742 6.8053 28 7 3.4129 -2.6937 4.5824 29 6 2.9741 -2.0692 3.5113 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6052 -1.7199 -1.2951 34 1 1.7516 -0.1584 -2.1369 35 1 4.6152 0.9369 -0.9771 36 1 5.2330 -0.2047 -2.1951 37 1 3.7755 0.7584 -2.5364 38 1 6.9095 -0.6271 0.2678 39 1 2.2490 -1.6318 1.1526 40 1 2.5248 1.0231 4.8477 41 1 3.3682 -0.2153 6.8238 42 1 3.9710 -1.1291 8.2441 43 1 4.7898 -2.3869 10.1932 44 1 5.3487 -4.7729 9.9765 45 1 5.0836 -5.9159 7.8142 46 1 4.2554 -4.6775 5.8568 47 1 2.8716 -2.6097 2.5820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669904494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:00 Heat of formation + Delta-G solvation = 31.436542 kcal Electronic energy + Delta-G solvation = -29046.560353 eV Core-core repulsion = 25194.155772 eV Total energy + Delta-G solvation = -3852.404581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.75843 -40.48947 -39.43595 -38.02188 -35.77544 -34.19979 -33.66886 -33.10597 -31.82477 -31.79814 -30.11498 -28.04502 -27.37585 -25.97021 -25.03575 -23.71129 -23.03343 -22.70708 -21.86134 -21.27642 -19.26241 -18.66294 -18.20072 -17.78545 -17.05798 -16.84468 -16.68319 -16.11293 -15.77698 -15.61430 -15.49802 -15.32124 -15.13737 -14.91028 -14.66821 -14.47798 -14.33178 -14.06917 -13.89273 -13.60297 -13.36665 -13.33616 -13.11809 -12.86692 -12.73795 -12.55065 -12.21467 -12.15809 -12.01226 -11.98448 -11.95298 -11.69039 -11.17252 -11.08970 -10.78464 -10.60837 -10.52752 -9.91216 -9.87843 -9.27200 -8.79570 -7.80144 -5.24177 -0.78301 0.13888 0.48344 0.56591 1.44035 1.46875 1.51802 1.88906 2.31401 2.50534 2.68989 2.95339 3.07743 3.35797 3.49058 3.67663 3.75482 3.78543 3.92652 4.01773 4.12514 4.16750 4.18816 4.31771 4.44067 4.49568 4.53959 4.58657 4.63801 4.76757 4.82332 4.85083 4.90997 4.98074 5.00663 5.03882 5.15642 5.19685 5.33701 5.38141 5.40604 5.55210 5.58349 5.60968 5.64973 5.70367 5.74263 6.03858 6.32103 6.64792 6.74658 7.15764 7.28752 7.89612 8.34521 9.23167 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011604 B = 0.003569 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.341368 B = 7844.379787 C = 9463.793201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.119 3.881 3 H 0.044 0.956 4 C 0.140 3.860 5 N -0.611 5.611 6 C 0.177 3.823 7 C -0.246 4.246 8 H 0.083 0.917 9 C -0.040 4.040 10 N -0.931 5.931 11 Si 0.941 3.059 12 H -0.289 1.289 13 H -0.311 1.311 14 H -0.260 1.260 15 N -0.679 5.679 16 C 0.559 3.441 17 O -0.589 6.589 18 C -0.197 4.197 19 C -0.022 4.022 20 C -0.164 4.164 21 C 0.174 3.826 22 C -0.077 4.077 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.134 4.134 27 C -0.099 4.099 28 N -0.501 5.501 29 C 0.144 3.856 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.078 0.922 35 H -0.007 1.007 36 H 0.017 0.983 37 H 0.031 0.969 38 H 0.240 0.760 39 H 0.405 0.595 40 H 0.154 0.846 41 H 0.180 0.820 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.142 0.858 46 H 0.119 0.881 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -5.034 15.771 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.062 0.938 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.032 3.968 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.236 4.236 10 N -0.578 5.578 11 Si 0.771 3.229 12 H -0.216 1.216 13 H -0.239 1.239 14 H -0.184 1.184 15 N -0.327 5.327 16 C 0.346 3.654 17 O -0.472 6.472 18 C -0.202 4.202 19 C -0.048 4.048 20 C -0.183 4.183 21 C 0.038 3.962 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.123 4.123 26 C -0.151 4.151 27 C -0.118 4.118 28 N -0.209 5.209 29 C -0.015 4.015 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.011 0.989 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.242 0.758 40 H 0.172 0.828 41 H 0.197 0.803 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.171 0.829 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.550 -5.085 15.689 18.138 hybrid contribution 1.060 0.036 -0.248 1.089 sum -6.491 -5.049 15.440 17.493 Atomic orbital electron populations 1.22035 0.93475 1.02787 1.02239 1.21818 0.94322 0.96347 0.86291 0.93774 1.21419 0.83097 0.99590 0.94525 1.44145 1.00937 1.22026 1.66241 1.20508 0.92765 0.89971 0.93570 1.19425 0.95719 0.90776 1.31671 0.89982 1.25469 0.99673 0.97722 1.00712 1.70258 1.12282 1.23492 1.51799 0.85661 0.78950 0.81343 0.76940 1.21568 1.23925 1.18386 1.45721 1.64111 1.14321 1.08586 1.18181 0.77242 0.86039 0.83899 1.90663 1.53729 1.16738 1.86058 1.21108 1.07035 0.96280 0.95825 1.21817 0.91599 1.01002 0.90417 1.22321 1.00918 0.94088 1.00946 1.20434 0.92868 0.91464 0.91404 1.18676 1.03149 0.94154 0.91852 1.21553 0.98070 1.01116 0.91147 1.21474 0.98798 0.94696 0.99262 1.21712 0.97477 0.95187 0.97927 1.21427 0.99800 1.01156 0.92753 1.21458 0.97025 0.93661 0.99658 1.67619 1.14264 1.39781 0.99269 1.22974 0.90963 0.90851 0.96727 0.91013 0.94141 0.89719 0.91166 0.90405 0.98917 0.96394 0.95095 0.95007 0.75819 0.82814 0.80308 0.83394 0.82494 0.82901 0.83986 0.86324 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 2 C 0.12 4.31 2.88 44.99 0.13 4.44 16 3 H 0.04 1.91 7.58 -2.39 -0.02 1.89 16 4 C 0.14 5.00 5.36 86.38 0.46 5.46 16 5 N -0.61 -28.30 2.82 -726.93 -2.05 -30.35 16 6 C 0.18 8.66 9.02 127.77 1.15 9.81 16 7 C -0.25 -12.20 8.02 84.03 0.67 -11.52 16 8 H 0.08 3.79 7.86 -2.91 -0.02 3.77 16 9 C -0.04 -2.15 5.06 84.86 0.43 -1.72 16 10 N -0.93 -54.79 10.67 21.65 0.23 -54.56 16 11 Si 0.94 44.40 29.58 68.60 2.03 46.43 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 14 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 15 N -0.68 -26.18 4.44 -445.53 -1.98 -28.16 16 16 C 0.56 23.13 7.74 86.75 0.67 23.80 16 17 O -0.59 -27.28 16.07 -3.94 -0.06 -27.34 16 18 C -0.20 -7.28 5.89 -19.96 -0.12 -7.40 16 19 C -0.02 -0.70 9.70 22.70 0.22 -0.48 16 20 C -0.16 -4.31 9.44 22.53 0.21 -4.10 16 21 C 0.17 5.24 6.73 41.97 0.28 5.52 16 22 C -0.08 -1.98 5.88 -20.05 -0.12 -2.09 16 23 C -0.10 -1.86 9.42 22.50 0.21 -1.65 16 24 C -0.12 -1.81 10.03 22.24 0.22 -1.58 16 25 C -0.10 -1.55 10.04 22.32 0.22 -1.32 16 26 C -0.13 -2.52 10.03 22.24 0.22 -2.29 16 27 C -0.10 -2.50 9.57 22.50 0.22 -2.28 16 28 N -0.50 -17.46 9.40 -183.83 -1.73 -19.19 16 29 C 0.14 5.18 10.70 85.08 0.91 6.09 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.25 8.03 -2.38 -0.02 2.23 16 34 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 35 H -0.01 -0.42 7.40 -2.39 -0.02 -0.44 16 36 H 0.02 0.93 7.21 -2.39 -0.02 0.91 16 37 H 0.03 1.27 7.84 -2.38 -0.02 1.25 16 38 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.40 15.10 5.45 -92.71 -0.51 14.60 16 40 H 0.15 4.52 7.73 -2.91 -0.02 4.50 16 41 H 0.18 3.12 6.17 -2.91 -0.02 3.11 16 42 H 0.15 2.00 6.17 -2.91 -0.02 1.98 16 43 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.12 3.31 7.53 -2.91 -0.02 3.29 16 47 H 0.16 5.62 6.41 -2.91 -0.02 5.60 16 Total: -1.00 -71.96 389.44 3.62 -68.35 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.48 Total: 29.52 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.69 Total: 15.31 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.53 Total: -132.26 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.96 3.62 -68.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669904494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.784 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds