Wall clock time and date at job start Tue Mar 31 2020 23:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47561 * 2 1 4 4 N 1.46506 * 109.46797 * 240.00466 * 2 1 3 5 5 C 1.36936 * 120.00080 * 85.00312 * 4 2 1 6 6 H 1.07994 * 120.00019 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99859 * 179.97438 * 5 4 2 8 8 N 1.31624 * 120.00286 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00016 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47026 * 60.00279 * 9 7 5 11 11 H 1.48507 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46944 * 299.99964 * 9 7 5 13 13 C 1.52996 * 109.47166 * 120.00608 * 2 1 3 14 14 H 1.09001 * 110.88580 * 60.88708 * 13 2 1 15 15 C 1.55157 * 111.00488 * 184.77189 * 13 2 1 16 16 C 1.54323 * 102.94257 * 153.57436 * 15 13 2 17 17 N 1.47017 * 107.27155 * 337.80581 * 16 15 13 18 18 C 1.34782 * 125.65219 * 178.89280 * 17 16 15 19 19 O 1.21541 * 120.00317 * 185.44485 * 18 17 16 20 20 C 1.47884 * 119.99479 * 5.44958 * 18 17 16 21 21 C 1.40573 * 119.70473 * 220.55119 * 20 18 17 22 22 C 1.35820 * 120.73083 * 179.71024 * 21 20 18 23 23 C 1.40545 * 119.98614 * 0.56430 * 22 21 20 24 24 C 1.40816 * 121.13746 * 179.74321 * 23 22 21 25 25 C 1.36552 * 118.20148 * 179.97438 * 24 23 22 26 26 C 1.39418 * 119.93776 * 0.02562 * 25 24 23 27 27 N 1.31018 * 121.71476 * 359.97438 * 26 25 24 28 28 C 1.33743 * 121.34998 * 0.02562 * 27 26 25 29 29 C 1.38411 * 119.70693 * 40.82578 * 20 18 17 30 30 C 1.47424 * 108.70559 * 358.94229 * 17 16 15 31 31 H 1.08997 * 109.47585 * 175.06533 * 1 2 3 32 32 H 1.09009 * 109.47253 * 55.06761 * 1 2 3 33 33 H 1.09007 * 109.47000 * 295.07182 * 1 2 3 34 34 H 0.97003 * 119.99580 * 264.99946 * 4 2 1 35 35 H 0.96997 * 120.00647 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.71926 * 271.93551 * 15 13 2 37 37 H 1.08995 * 110.71941 * 35.21054 * 15 13 2 38 38 H 1.09006 * 109.88358 * 97.22314 * 16 15 13 39 39 H 1.08995 * 109.88382 * 218.23092 * 16 15 13 40 40 H 1.07994 * 119.63316 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.00602 * 180.25516 * 22 21 20 42 42 H 1.08003 * 120.90102 * 359.97438 * 24 23 22 43 43 H 1.08000 * 120.02975 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.14196 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.23335 * 0.02562 * 29 20 18 46 46 H 1.09000 * 110.36972 * 265.29194 * 30 17 16 47 47 H 1.09001 * 110.36867 * 142.96504 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6615 -3.5091 8 7 2.9251 -1.9386 -3.4501 9 14 2.7900 0.2703 -5.1183 10 1 3.7445 1.3933 -4.9372 11 1 3.2990 -0.6481 -6.1685 12 1 1.4672 0.8061 -5.5287 13 6 2.0400 -0.7214 1.2491 14 1 1.7024 -1.7577 1.2645 15 6 3.5863 -0.6386 1.3468 16 6 3.8438 -0.7597 2.8636 17 7 2.6060 -0.3612 3.5496 18 6 2.4159 -0.3505 4.8839 19 8 1.3181 -0.0965 5.3394 20 6 3.5432 -0.6479 5.7937 21 6 3.3280 -1.4430 6.9328 22 6 4.3496 -1.7339 7.7793 23 6 5.6365 -1.2285 7.5269 24 6 6.7119 -1.5104 8.3912 25 6 7.9370 -0.9889 8.0883 26 6 8.0954 -0.2008 6.9492 27 7 7.0928 0.0597 6.1470 28 6 5.8676 -0.4202 6.3861 29 6 4.7996 -0.1360 5.5192 30 6 1.6068 0.0237 2.5364 31 1 -0.3634 -1.0238 -0.0884 32 1 -0.3634 0.5885 -0.8426 33 1 -0.3633 0.4355 0.9309 34 1 2.2489 -1.6317 -1.1528 35 1 3.2484 -2.3959 -4.2421 36 1 4.0514 -1.4651 0.8095 37 1 3.9458 0.3188 0.9698 38 1 4.0923 -1.7905 3.1163 39 1 4.6607 -0.0995 3.1547 40 1 2.3404 -1.8303 7.1348 41 1 4.1719 -2.3493 8.6487 42 1 6.5715 -2.1225 9.2699 43 1 8.7824 -1.1867 8.7306 44 1 9.0702 0.2048 6.7216 45 1 4.9574 0.4783 4.6450 46 1 1.6256 1.1016 2.3752 47 1 0.6115 -0.2974 2.8439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672235787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:42 Heat of formation + Delta-G solvation = 37.582018 kcal Electronic energy + Delta-G solvation = -28387.406454 eV Core-core repulsion = 24535.268362 eV Total energy + Delta-G solvation = -3852.138093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28093 -40.07535 -38.02790 -36.89653 -35.25963 -33.93297 -32.49253 -31.21845 -30.65669 -30.20178 -29.17952 -27.42878 -25.57297 -24.48601 -23.97582 -22.96332 -22.50376 -21.42521 -20.18418 -19.63517 -18.35855 -17.65362 -17.39365 -17.08173 -16.42392 -16.08971 -15.46340 -15.00883 -14.97070 -14.68504 -14.37116 -14.09025 -13.85730 -13.71932 -13.47047 -13.40114 -13.20005 -12.88987 -12.64880 -12.44625 -12.14642 -12.10647 -11.98589 -11.86390 -11.71353 -11.21981 -10.95735 -10.87323 -10.69897 -10.58298 -10.36461 -10.22956 -10.11446 -9.87046 -9.83744 -9.63332 -9.16765 -8.91237 -8.71355 -8.59025 -6.96810 -5.76939 -3.05427 -0.09746 0.31960 1.52391 2.21834 2.78894 2.97911 3.43811 3.48741 3.49138 3.71636 3.86676 4.13838 4.26213 4.37024 4.46917 4.55914 4.62093 4.68216 4.80370 4.87037 4.93791 5.04464 5.13419 5.28672 5.35669 5.45028 5.50592 5.52839 5.54608 5.65202 5.70452 5.85689 5.87681 5.91198 5.96981 5.98322 6.06876 6.09171 6.21557 6.22718 6.37615 6.39158 6.45914 6.59049 6.63868 6.87142 7.09946 7.44026 7.51473 7.69730 8.01123 8.41558 9.52975 10.09942 10.44959 11.45622 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002337 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.850395 B =11979.893539 C =13228.237380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.091 3.909 17 N -0.608 5.608 18 C 0.571 3.429 19 O -0.535 6.535 20 C -0.099 4.099 21 C -0.071 4.071 22 C -0.101 4.101 23 C -0.090 4.090 24 C -0.060 4.060 25 C -0.171 4.171 26 C 0.130 3.870 27 N -0.467 5.467 28 C 0.120 3.880 29 C -0.057 4.057 30 C 0.113 3.887 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.162 0.838 45 H 0.148 0.852 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -0.072 26.055 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.032 4.032 17 N -0.341 5.341 18 C 0.359 3.641 19 O -0.413 6.413 20 C -0.104 4.104 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.092 4.092 24 C -0.086 4.086 25 C -0.190 4.190 26 C -0.043 4.043 27 N -0.174 5.174 28 C -0.001 4.001 29 C -0.076 4.076 30 C -0.009 4.009 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.179 0.821 45 H 0.166 0.834 46 H 0.090 0.910 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.997 0.704 25.417 26.654 hybrid contribution 0.179 -0.427 -0.201 0.505 sum 8.176 0.277 25.216 26.510 Atomic orbital electron populations 1.22504 0.99224 1.01291 0.99777 1.20129 0.91801 0.95154 0.85410 0.93244 1.42359 1.78180 1.10636 1.05106 1.19168 1.36418 0.93830 0.87309 0.91289 1.24713 1.02252 0.95955 0.97980 1.69643 1.50971 1.08628 1.28963 0.86299 0.77762 0.78609 0.83701 1.21305 1.21768 1.21347 1.22667 0.95147 1.00381 0.94020 0.90016 1.22592 0.96435 1.04261 0.92056 1.22428 0.86510 1.00136 0.94103 1.48477 1.15912 1.65082 1.04635 1.17861 0.87676 0.77647 0.80868 1.90793 1.25140 1.49581 1.75790 1.19917 0.93252 1.00520 0.96734 1.20864 0.99970 0.95885 0.92277 1.20886 0.91126 1.00021 0.99933 1.18958 0.95217 0.98964 0.96104 1.21514 0.92004 0.97009 0.98109 1.21969 0.98511 0.99399 0.99158 1.23033 0.97837 0.93491 0.89949 1.68045 0.99026 1.20622 1.29736 1.18729 0.91916 0.95902 0.93534 1.21475 0.89636 0.97948 0.98508 1.22384 0.92315 0.99533 0.86664 0.93304 0.92887 0.94334 0.78285 0.93510 0.89344 0.90082 0.91400 0.91044 0.84486 0.84563 0.84188 0.84320 0.82124 0.83427 0.90969 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.38 37.16 0.35 -2.61 16 2 C 0.19 3.46 2.40 -67.93 -0.16 3.29 16 3 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 4 N -0.72 -17.08 4.90 -53.43 -0.26 -17.35 16 5 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 9 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.10 -1.58 2.64 -88.47 -0.23 -1.82 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.12 -1.67 6.21 -24.90 -0.15 -1.83 16 16 C 0.09 1.12 5.80 -3.07 -0.02 1.10 16 17 N -0.61 -8.38 3.32 -171.62 -0.57 -8.96 16 18 C 0.57 8.30 7.43 -12.31 -0.09 8.21 16 19 O -0.54 -9.36 17.15 5.33 0.09 -9.27 16 20 C -0.10 -1.21 5.47 -105.00 -0.57 -1.78 16 21 C -0.07 -0.73 9.53 -39.57 -0.38 -1.11 16 22 C -0.10 -0.85 9.74 -39.58 -0.39 -1.23 16 23 C -0.09 -0.84 5.75 -106.73 -0.61 -1.45 16 24 C -0.06 -0.40 9.88 -39.22 -0.39 -0.79 16 25 C -0.17 -1.01 10.03 -39.75 -0.40 -1.41 16 26 C 0.13 1.00 11.15 -17.46 -0.19 0.81 16 27 N -0.47 -5.13 10.34 -10.98 -0.11 -5.24 16 28 C 0.12 1.35 6.60 -84.87 -0.56 0.79 16 29 C -0.06 -0.66 8.40 -38.68 -0.33 -0.98 16 30 C 0.11 1.62 5.41 -2.53 -0.01 1.61 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.04 0.57 7.10 -51.93 -0.37 0.21 16 34 H 0.38 9.69 7.80 -40.82 -0.32 9.37 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.80 5.50 -51.93 -0.29 0.51 16 40 H 0.14 1.30 8.05 -52.49 -0.42 0.88 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 43 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.15 1.67 5.70 -52.49 -0.30 1.37 16 46 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 47 H 0.08 1.18 7.78 -51.93 -0.40 0.77 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -32.88 386.04 -10.43 -43.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.70 Total: 7.58 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.39 Total: -6.14 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.22 Total: -58.35 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -10.43 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672235787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.884 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds