Wall clock time and date at job start Tue Mar 31 2020 23:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47135 * 2 1 4 4 N 1.46501 * 109.47077 * 120.00106 * 2 1 3 5 5 C 1.36934 * 119.99701 * 274.72410 * 4 2 1 6 6 H 1.07993 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99727 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00175 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99920 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47011 * 59.99882 * 9 7 5 11 11 H 1.48493 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47120 * 300.00047 * 9 7 5 13 13 C 1.53002 * 109.47093 * 239.99749 * 2 1 3 14 14 H 1.09004 * 110.88720 * 299.30604 * 13 2 1 15 15 C 1.55160 * 111.00344 * 63.18121 * 13 2 1 16 16 C 1.54322 * 102.94265 * 153.57726 * 15 13 2 17 17 N 1.47017 * 107.27152 * 337.80564 * 16 15 13 18 18 C 1.34772 * 125.64984 * 178.97507 * 17 16 15 19 19 O 1.21553 * 120.00221 * 175.13279 * 18 17 16 20 20 C 1.47883 * 120.00074 * 355.13695 * 18 17 16 21 21 C 1.40573 * 119.70811 * 42.57644 * 20 18 17 22 22 C 1.35815 * 120.73830 * 179.97438 * 21 20 18 23 23 C 1.40548 * 119.97953 * 0.02562 * 22 21 20 24 24 C 1.40821 * 121.12879 * 180.02562 * 23 22 21 25 25 C 1.36560 * 118.19246 * 179.97438 * 24 23 22 26 26 C 1.39420 * 119.94080 * 0.04646 * 25 24 23 27 27 N 1.31012 * 121.71625 * 359.97280 * 26 25 24 28 28 C 1.33751 * 121.34781 * 0.02562 * 27 26 25 29 29 C 1.38407 * 119.70498 * 222.30892 * 20 18 17 30 30 C 1.47472 * 108.72153 * 358.97862 * 17 16 15 31 31 H 1.09005 * 109.47452 * 300.00008 * 1 2 3 32 32 H 1.09001 * 109.47119 * 59.99824 * 1 2 3 33 33 H 1.09005 * 109.47462 * 179.97438 * 1 2 3 34 34 H 0.96995 * 119.99906 * 94.99427 * 4 2 1 35 35 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 36 36 H 1.09007 * 110.72175 * 271.93970 * 15 13 2 37 37 H 1.09002 * 110.71795 * 35.03021 * 15 13 2 38 38 H 1.09001 * 109.88362 * 97.22856 * 16 15 13 39 39 H 1.09006 * 109.87947 * 218.23673 * 16 15 13 40 40 H 1.08003 * 119.63058 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.01086 * 179.97438 * 22 21 20 42 42 H 1.07992 * 120.90504 * 359.96249 * 24 23 22 43 43 H 1.08009 * 120.02758 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.14084 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.23857 * 0.02562 * 29 20 18 46 46 H 1.09007 * 110.34860 * 265.25032 * 30 17 16 47 47 H 1.08996 * 110.40666 * 142.91676 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0061 2.3743 6 1 1.9014 1.0427 2.4218 7 6 2.6176 -0.6604 3.5076 8 7 2.9255 -1.9388 3.4498 9 14 2.8040 0.2736 5.1146 10 1 1.4848 0.8162 5.5276 11 1 3.3128 -0.6448 6.1647 12 1 3.7631 1.3919 4.9288 13 6 2.0400 -0.7213 -1.2492 14 1 1.6995 -1.7567 -1.2664 15 6 1.6092 0.0271 -2.5383 16 6 2.7009 -0.3748 -3.5524 17 7 3.8814 -0.7904 -2.7811 18 6 5.0433 -1.2333 -3.3010 19 8 5.9862 -1.4670 -2.5703 20 6 5.1712 -1.4348 -4.7604 21 6 4.6405 -0.4796 -5.6447 22 6 4.7466 -0.6434 -6.9888 23 6 5.3923 -1.7782 -7.5092 24 6 5.5165 -1.9720 -8.8985 25 6 6.1557 -3.0957 -9.3385 26 6 6.6628 -4.0129 -8.4190 27 7 6.5452 -3.8298 -7.1271 28 6 5.9306 -2.7507 -6.6304 29 6 5.8173 -2.5595 -5.2434 30 6 3.5841 -0.6428 -1.3443 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.2488 -2.3960 4.2418 36 1 0.6288 -0.3128 -2.8722 37 1 1.6075 1.1049 -2.3762 38 1 2.3490 -1.2033 -4.1671 39 1 2.9500 0.4767 -4.1858 40 1 4.1429 0.3943 -5.2509 41 1 4.3342 0.0977 -7.6575 42 1 5.1169 -1.2518 -9.5969 43 1 6.2679 -3.2739 -10.3978 44 1 7.1664 -4.8970 -8.7813 45 1 6.2264 -3.2878 -4.5589 46 1 3.9379 0.3222 -0.9812 47 1 4.0408 -1.4534 -0.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672235789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:46 Heat of formation + Delta-G solvation = 38.809397 kcal Electronic energy + Delta-G solvation = -28349.333677 eV Core-core repulsion = 24497.248807 eV Total energy + Delta-G solvation = -3852.084870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24725 -40.02779 -37.97584 -36.91711 -35.21518 -33.85162 -32.55447 -31.25328 -30.46754 -30.31693 -28.66394 -28.14972 -25.36531 -24.34907 -23.91402 -23.09258 -22.44341 -21.52083 -20.05384 -19.66813 -18.58168 -17.53552 -17.23795 -17.01908 -16.44476 -15.99556 -15.37868 -14.89125 -14.85163 -14.66089 -14.46637 -14.28999 -13.92407 -13.67205 -13.64623 -13.43313 -13.05427 -12.81712 -12.71065 -12.28269 -12.21012 -12.08034 -12.00259 -11.81722 -11.52279 -11.35080 -10.94088 -10.86012 -10.75382 -10.57558 -10.53831 -10.22668 -10.00003 -9.89035 -9.79881 -9.60719 -9.14733 -8.89118 -8.67693 -8.51434 -6.94772 -5.73505 -3.02795 -0.04825 0.31951 1.56639 2.25766 2.83160 3.07218 3.46167 3.50675 3.51880 3.74883 3.92370 4.15134 4.26790 4.37012 4.47052 4.53209 4.62774 4.65204 4.73389 4.76234 4.96995 5.00978 5.10613 5.31838 5.36928 5.41123 5.49338 5.55001 5.56888 5.64417 5.69902 5.86775 5.87955 5.90649 5.93454 5.97351 6.04577 6.11516 6.16117 6.29552 6.33850 6.39179 6.41576 6.55548 6.62870 6.84931 7.07059 7.52512 7.55510 7.71673 8.14426 8.44407 9.55685 10.12296 10.46625 11.48883 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.002211 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.717338 B =12660.526791 C =13434.206778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.125 4.125 16 C 0.096 3.904 17 N -0.611 5.611 18 C 0.568 3.432 19 O -0.525 6.525 20 C -0.100 4.100 21 C -0.095 4.095 22 C -0.100 4.100 23 C -0.092 4.092 24 C -0.060 4.060 25 C -0.172 4.172 26 C 0.129 3.871 27 N -0.466 5.466 28 C 0.121 3.879 29 C -0.034 4.034 30 C 0.120 3.880 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.146 0.854 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 1.717 -29.990 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.027 4.027 17 N -0.345 5.345 18 C 0.356 3.644 19 O -0.402 6.402 20 C -0.105 4.105 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.094 4.094 24 C -0.086 4.086 25 C -0.191 4.191 26 C -0.044 4.044 27 N -0.174 5.174 28 C 0.000 4.000 29 C -0.054 4.054 30 C -0.001 4.001 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.178 0.822 45 H 0.164 0.836 46 H 0.092 0.908 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.544 1.119 -28.754 28.817 hybrid contribution -0.229 0.744 0.233 0.812 sum 1.315 1.863 -28.521 28.612 Atomic orbital electron populations 1.22442 0.99078 1.00892 0.99971 1.20149 0.91922 0.95141 0.85334 0.93299 1.42409 1.78151 1.10651 1.05336 1.19145 1.36836 0.93690 0.87379 0.91283 1.24737 1.02115 0.95941 0.98047 1.69644 1.50724 1.08550 1.29005 0.86297 0.77704 0.78652 0.83691 1.21358 1.21748 1.21292 1.22682 0.93782 1.00608 0.95113 0.90021 1.22703 0.97606 1.01367 0.94665 1.22288 0.85976 0.99366 0.95033 1.48501 1.12841 1.64081 1.09038 1.17857 0.81918 0.77592 0.87080 1.90852 1.37366 1.51021 1.60957 1.19900 1.00699 0.96384 0.93505 1.21216 0.98098 0.98939 0.93049 1.20870 0.98997 0.96616 0.95375 1.18945 0.99904 0.96264 0.94251 1.21510 0.95827 0.97204 0.94064 1.21965 0.99936 0.95600 1.01642 1.23026 0.94924 0.98302 0.88171 1.68044 1.13932 1.19845 1.15595 1.18733 0.96654 0.90982 0.93606 1.21153 0.94639 0.96438 0.93148 1.22325 0.95586 1.03167 0.79020 0.92762 0.94403 0.93515 0.78253 0.93451 0.89980 0.90236 0.91402 0.91305 0.84312 0.84628 0.84188 0.84347 0.82180 0.83589 0.90828 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.31 37.16 0.35 -2.38 16 2 C 0.18 3.40 2.40 -67.93 -0.16 3.24 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -17.50 4.90 -53.43 -0.26 -17.76 16 5 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 9 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.54 2.63 -88.47 -0.23 -1.78 16 14 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 15 C -0.13 -1.36 5.44 -24.90 -0.14 -1.49 16 16 C 0.10 1.00 5.49 -3.07 -0.02 0.98 16 17 N -0.61 -8.86 3.33 -171.58 -0.57 -9.43 16 18 C 0.57 9.08 7.44 -12.31 -0.09 8.99 16 19 O -0.53 -10.68 17.23 5.32 0.09 -10.59 16 20 C -0.10 -1.28 5.51 -105.01 -0.58 -1.86 16 21 C -0.10 -0.90 8.43 -39.57 -0.33 -1.24 16 22 C -0.10 -0.79 9.74 -39.58 -0.39 -1.18 16 23 C -0.09 -0.86 5.75 -106.73 -0.61 -1.47 16 24 C -0.06 -0.40 9.89 -39.21 -0.39 -0.79 16 25 C -0.17 -1.03 10.03 -39.75 -0.40 -1.43 16 26 C 0.13 1.02 11.15 -17.46 -0.19 0.83 16 27 N -0.47 -5.41 10.34 -10.98 -0.11 -5.52 16 28 C 0.12 1.44 6.60 -84.87 -0.56 0.88 16 29 C -0.03 -0.45 9.60 -38.68 -0.37 -0.82 16 30 C 0.12 2.04 6.15 -2.51 -0.02 2.03 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.50 7.38 -51.93 -0.38 0.12 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.08 0.76 8.12 -51.92 -0.42 0.33 16 37 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.56 5.73 -51.93 -0.30 0.26 16 40 H 0.14 1.07 5.38 -52.48 -0.28 0.79 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 44 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 46 H 0.07 1.32 8.03 -51.92 -0.42 0.91 16 47 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -34.65 386.31 -10.44 -45.09 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.73 Total: 7.00 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -4.38 Total: -4.59 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.22 Total: -60.24 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.65 -10.44 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672235789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.898 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds