Wall clock time and date at job start Tue Mar 31 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47135 * 2 1 4 4 N 1.46501 * 109.47077 * 120.00106 * 2 1 3 5 5 C 1.36934 * 119.99701 * 274.72410 * 4 2 1 6 6 H 1.07993 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99727 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00175 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99920 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47011 * 59.99882 * 9 7 5 11 11 H 1.48493 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47120 * 300.00047 * 9 7 5 13 13 C 1.53002 * 109.47093 * 239.99749 * 2 1 3 14 14 H 1.09004 * 110.88720 * 299.30604 * 13 2 1 15 15 C 1.55160 * 111.00344 * 63.18121 * 13 2 1 16 16 C 1.54322 * 102.94265 * 153.57726 * 15 13 2 17 17 N 1.47017 * 107.27152 * 337.80564 * 16 15 13 18 18 C 1.34772 * 125.64984 * 178.97507 * 17 16 15 19 19 O 1.21553 * 120.00221 * 175.13279 * 18 17 16 20 20 C 1.47883 * 120.00074 * 355.13695 * 18 17 16 21 21 C 1.40573 * 119.70811 * 42.57644 * 20 18 17 22 22 C 1.35815 * 120.73830 * 179.97438 * 21 20 18 23 23 C 1.40548 * 119.97953 * 0.02562 * 22 21 20 24 24 C 1.40821 * 121.12879 * 180.02562 * 23 22 21 25 25 C 1.36560 * 118.19246 * 179.97438 * 24 23 22 26 26 C 1.39420 * 119.94080 * 0.04646 * 25 24 23 27 27 N 1.31012 * 121.71625 * 359.97280 * 26 25 24 28 28 C 1.33751 * 121.34781 * 0.02562 * 27 26 25 29 29 C 1.38407 * 119.70498 * 222.30892 * 20 18 17 30 30 C 1.47472 * 108.72153 * 358.97862 * 17 16 15 31 31 H 1.09005 * 109.47452 * 300.00008 * 1 2 3 32 32 H 1.09001 * 109.47119 * 59.99824 * 1 2 3 33 33 H 1.09005 * 109.47462 * 179.97438 * 1 2 3 34 34 H 0.96995 * 119.99906 * 94.99427 * 4 2 1 35 35 H 0.96994 * 120.00032 * 180.02562 * 8 7 5 36 36 H 1.09007 * 110.72175 * 271.93970 * 15 13 2 37 37 H 1.09002 * 110.71795 * 35.03021 * 15 13 2 38 38 H 1.09001 * 109.88362 * 97.22856 * 16 15 13 39 39 H 1.09006 * 109.87947 * 218.23673 * 16 15 13 40 40 H 1.08003 * 119.63058 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.01086 * 179.97438 * 22 21 20 42 42 H 1.07992 * 120.90504 * 359.96249 * 24 23 22 43 43 H 1.08009 * 120.02758 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.14084 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.23857 * 0.02562 * 29 20 18 46 46 H 1.09007 * 110.34860 * 265.25032 * 30 17 16 47 47 H 1.08996 * 110.40666 * 142.91676 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0061 2.3743 6 1 1.9014 1.0427 2.4218 7 6 2.6176 -0.6604 3.5076 8 7 2.9255 -1.9388 3.4498 9 14 2.8040 0.2736 5.1146 10 1 1.4848 0.8162 5.5276 11 1 3.3128 -0.6448 6.1647 12 1 3.7631 1.3919 4.9288 13 6 2.0400 -0.7213 -1.2492 14 1 1.6995 -1.7567 -1.2664 15 6 1.6092 0.0271 -2.5383 16 6 2.7009 -0.3748 -3.5524 17 7 3.8814 -0.7904 -2.7811 18 6 5.0433 -1.2333 -3.3010 19 8 5.9862 -1.4670 -2.5703 20 6 5.1712 -1.4348 -4.7604 21 6 4.6405 -0.4796 -5.6447 22 6 4.7466 -0.6434 -6.9888 23 6 5.3923 -1.7782 -7.5092 24 6 5.5165 -1.9720 -8.8985 25 6 6.1557 -3.0957 -9.3385 26 6 6.6628 -4.0129 -8.4190 27 7 6.5452 -3.8298 -7.1271 28 6 5.9306 -2.7507 -6.6304 29 6 5.8173 -2.5595 -5.2434 30 6 3.5841 -0.6428 -1.3443 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.2488 -2.3960 4.2418 36 1 0.6288 -0.3128 -2.8722 37 1 1.6075 1.1049 -2.3762 38 1 2.3490 -1.2033 -4.1671 39 1 2.9500 0.4767 -4.1858 40 1 4.1429 0.3943 -5.2509 41 1 4.3342 0.0977 -7.6575 42 1 5.1169 -1.2518 -9.5969 43 1 6.2679 -3.2739 -10.3978 44 1 7.1664 -4.8970 -8.7813 45 1 6.2264 -3.2878 -4.5589 46 1 3.9379 0.3222 -0.9812 47 1 4.0408 -1.4534 -0.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672235789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:45 Heat of formation + Delta-G solvation = 15.657460 kcal Electronic energy + Delta-G solvation = -28350.337620 eV Core-core repulsion = 24497.248807 eV Total energy + Delta-G solvation = -3853.088813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.02170 -41.10278 -39.21514 -37.77908 -36.82172 -34.50114 -34.32274 -32.39601 -31.55867 -31.10664 -30.03496 -29.58116 -26.35278 -25.82249 -25.01229 -24.06849 -23.17833 -22.84848 -21.08812 -21.04403 -19.56999 -18.99402 -18.27121 -17.95132 -17.47844 -17.21579 -16.52515 -16.42595 -15.71437 -15.55879 -15.51409 -15.37351 -15.11661 -15.03374 -14.73408 -14.34236 -14.15646 -14.01320 -13.91482 -13.58979 -13.41838 -13.14349 -13.01856 -12.86037 -12.77460 -12.67559 -12.46941 -12.35996 -12.24182 -12.01794 -11.65209 -11.58376 -11.52169 -11.37626 -11.17667 -10.92182 -10.48788 -9.90551 -9.72743 -9.34211 -8.98727 -7.92243 -5.19850 -0.74856 -0.35236 0.87373 1.37926 1.45312 1.48668 1.54289 1.73936 2.07821 2.56627 3.05162 3.16624 3.39225 3.42204 3.53365 3.58820 3.68049 3.79967 3.86409 3.95440 4.03772 4.04607 4.15311 4.25161 4.36958 4.43696 4.55024 4.57272 4.64918 4.67519 4.69943 4.84863 4.85420 4.88076 4.92548 4.97773 5.09591 5.10491 5.11983 5.18488 5.23797 5.30887 5.33658 5.42250 5.51903 5.53923 5.66742 5.78140 6.29754 6.37934 6.90982 6.91950 7.35317 8.13840 8.34275 9.31328 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.002211 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.717338 B =12660.526791 C =13434.206778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 H 0.049 0.951 4 N -0.739 5.739 5 C -0.230 4.230 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.301 1.301 12 H -0.280 1.280 13 C -0.093 4.093 14 H 0.073 0.927 15 C -0.111 4.111 16 C 0.091 3.909 17 N -0.607 5.607 18 C 0.560 3.440 19 O -0.589 6.589 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.053 4.053 25 C -0.165 4.165 26 C 0.127 3.873 27 N -0.518 5.518 28 C 0.098 3.902 29 C -0.065 4.065 30 C 0.123 3.877 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.162 0.838 41 H 0.184 0.816 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 4.525 -35.224 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.379 5.379 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.471 6.471 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.091 4.091 23 C -0.106 4.106 24 C -0.078 4.078 25 C -0.184 4.184 26 C -0.046 4.046 27 N -0.227 5.227 28 C -0.022 4.022 29 C -0.085 4.085 30 C 0.001 3.999 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.179 0.821 41 H 0.202 0.798 42 H 0.201 0.799 43 H 0.197 0.803 44 H 0.202 0.798 45 H 0.130 0.870 46 H 0.077 0.923 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.871 3.986 -34.051 34.294 hybrid contribution 0.542 -0.177 1.633 1.730 sum -0.329 3.809 -32.417 32.642 Atomic orbital electron populations 1.22268 0.96762 1.00897 1.01248 1.20438 0.93317 0.94786 0.84417 0.93304 1.42676 1.78470 1.10156 1.06583 1.19575 1.34303 0.94056 0.88311 0.90390 1.25552 1.03442 0.96846 1.01563 1.69822 1.53051 1.10255 1.29287 0.85267 0.78005 0.77231 0.79637 1.20072 1.22718 1.20670 1.22499 0.91907 1.00616 0.96285 0.90894 1.22758 0.99078 1.01704 0.91391 1.22653 0.83915 1.01421 0.94946 1.48560 1.13753 1.63293 1.08288 1.18555 0.81420 0.76481 0.88529 1.90801 1.39690 1.53776 1.62808 1.19674 1.02225 0.97588 0.91499 1.21355 0.98828 0.98693 0.93371 1.21366 0.96394 0.96257 0.95090 1.19289 0.99790 0.96042 0.95504 1.22026 0.94757 0.97966 0.93074 1.22415 0.98254 0.94538 1.03210 1.23667 0.93961 0.99521 0.87427 1.67999 1.16007 1.20893 1.17833 1.18781 0.97869 0.92347 0.93164 1.21012 0.96549 0.96822 0.94129 1.22061 0.97009 1.00348 0.80521 0.94765 0.89743 0.94154 0.80016 0.94362 0.86833 0.88586 0.89683 0.87611 0.82078 0.79839 0.79892 0.80286 0.79801 0.86962 0.92268 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.31 71.98 0.67 -4.09 16 2 C 0.18 6.51 2.40 44.99 0.11 6.62 16 3 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 4 N -0.74 -37.05 4.90 -322.95 -1.58 -38.63 16 5 C -0.23 -12.84 9.93 84.03 0.83 -12.01 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 8 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 9 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 C -0.09 -2.80 2.63 -9.40 -0.02 -2.82 16 14 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.11 -1.99 5.44 31.78 0.17 -1.82 16 16 C 0.09 1.62 5.49 86.73 0.48 2.10 16 17 N -0.61 -18.11 3.33 -815.05 -2.71 -20.82 16 18 C 0.56 19.40 7.44 86.80 0.65 20.05 16 19 O -0.59 -26.96 17.23 -3.88 -0.07 -27.02 16 20 C -0.11 -2.80 5.51 -20.11 -0.11 -2.91 16 21 C -0.10 -1.72 8.43 22.28 0.19 -1.53 16 22 C -0.07 -0.84 9.74 22.27 0.22 -0.62 16 23 C -0.10 -1.64 5.75 -21.23 -0.12 -1.77 16 24 C -0.05 -0.43 9.89 22.51 0.22 -0.21 16 25 C -0.16 -1.27 10.03 22.16 0.22 -1.04 16 26 C 0.13 1.79 11.15 85.10 0.95 2.74 16 27 N -0.52 -12.39 10.34 -188.65 -1.95 -14.34 16 28 C 0.10 2.39 6.60 40.25 0.27 2.65 16 29 C -0.07 -1.90 9.60 22.85 0.22 -1.68 16 30 C 0.12 4.48 6.15 86.84 0.53 5.01 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.08 1.87 7.38 -2.39 -0.02 1.85 16 33 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 35 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.11 1.44 8.12 -2.38 -0.02 1.42 16 37 H 0.10 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.18 5.73 -2.38 -0.01 1.16 16 40 H 0.16 1.79 5.38 -2.91 -0.02 1.77 16 41 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 44 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.11 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.06 2.28 8.03 -2.38 -0.02 2.26 16 47 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 Total: -1.00 -86.69 386.31 2.20 -84.49 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.27 Total: 24.11 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.93 Total: 4.27 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.96 Total: -135.50 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.07 Total: -27.02 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -86.69 2.20 -84.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672235789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.149 kcal (2) G-P(sol) polarization free energy of solvation -86.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds