Wall clock time and date at job start Tue Mar 31 2020 23:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 N 1.46497 * 109.47407 * 239.99236 * 2 1 3 5 5 C 1.36943 * 119.99907 * 85.00063 * 4 2 1 6 6 H 1.08007 * 119.99210 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46996 * 89.99994 * 9 7 5 11 11 H 1.48504 * 109.46825 * 209.99842 * 9 7 5 12 12 H 1.48498 * 109.46826 * 329.99555 * 9 7 5 13 13 C 1.53006 * 109.46773 * 119.99648 * 2 1 3 14 14 H 1.08998 * 109.47210 * 184.99742 * 13 2 1 15 15 C 1.53002 * 109.47208 * 64.99903 * 13 2 1 16 16 N 1.46498 * 109.47025 * 305.00168 * 13 2 1 17 17 C 1.34782 * 119.99543 * 205.00017 * 16 13 2 18 18 O 1.21552 * 120.00278 * 359.97438 * 17 16 13 19 19 C 1.47861 * 119.99730 * 179.97438 * 17 16 13 20 20 C 1.39623 * 120.50035 * 359.97438 * 19 17 16 21 21 N 1.31696 * 120.82906 * 179.74106 * 20 19 17 22 22 C 1.31816 * 122.01307 * 0.26185 * 21 20 19 23 23 C 1.39395 * 120.91613 * 359.97438 * 22 21 20 24 24 C 1.48412 * 120.46761 * 179.97438 * 23 22 21 25 25 C 1.39334 * 120.11674 * 179.72920 * 24 23 22 26 26 C 1.38021 * 119.87612 * 179.74379 * 25 24 23 27 27 C 1.38325 * 120.11721 * 0.53625 * 26 25 24 28 28 C 1.38317 * 120.24217 * 359.71479 * 27 26 25 29 29 C 1.38014 * 120.12430 * 0.03052 * 28 27 26 30 30 C 1.39517 * 119.06581 * 0.02562 * 23 22 21 31 31 H 1.09005 * 109.46697 * 59.99998 * 1 2 3 32 32 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47072 * 300.00767 * 1 2 3 34 34 H 0.96999 * 120.00386 * 265.01002 * 4 2 1 35 35 H 0.97004 * 120.00107 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46903 * 300.00027 * 15 13 2 37 37 H 1.09001 * 109.46791 * 59.99696 * 15 13 2 38 38 H 1.09001 * 109.47093 * 179.97438 * 15 13 2 39 39 H 0.96998 * 120.00230 * 24.99837 * 16 13 2 40 40 H 1.08002 * 119.58938 * 0.02772 * 20 19 17 41 41 H 1.08006 * 119.53797 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.06059 * 0.02562 * 25 24 23 43 43 H 1.07994 * 119.93974 * 180.27041 * 26 25 24 44 44 H 1.08004 * 119.87346 * 179.74434 * 27 26 25 45 45 H 1.08002 * 119.93408 * 180.02562 * 28 27 26 46 46 H 1.07996 * 120.06629 * 179.97438 * 29 28 27 47 47 H 1.07987 * 120.91376 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4241 7 6 2.6115 -0.6623 -3.5091 8 7 2.9236 -1.9395 -3.4502 9 14 2.7906 0.2697 -5.1182 10 1 4.1533 0.8538 -5.2028 11 1 2.5796 -0.6615 -6.2556 12 1 1.7812 1.3574 -5.1751 13 6 2.0400 -0.7212 1.2494 14 1 3.1262 -0.6444 1.2953 15 6 1.6351 -2.1954 1.1882 16 7 1.4557 -0.1035 2.4424 17 6 2.0911 -0.1937 3.6276 18 8 3.1486 -0.7878 3.7067 19 6 1.5018 0.4302 4.8317 20 6 0.2879 1.1156 4.7526 21 7 -0.2453 1.6694 5.8219 22 6 0.3357 1.6091 7.0035 23 6 1.5518 0.9487 7.1708 24 6 2.1976 0.8874 8.5056 25 6 3.4104 0.2204 8.6656 26 6 4.0092 0.1710 9.9082 27 6 3.4019 0.7726 10.9957 28 6 2.1953 1.4315 10.8435 29 6 1.5903 1.4915 9.6045 30 6 2.1540 0.3470 6.0654 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1524 35 1 3.2470 -2.3969 -4.2421 36 1 0.5488 -2.2723 1.1422 37 1 2.0698 -2.6550 0.3005 38 1 1.9988 -2.7093 2.0780 39 1 0.6117 0.3703 2.3793 40 1 -0.2224 1.1887 3.8036 41 1 -0.1375 2.0772 7.8541 42 1 3.8833 -0.2531 7.8179 43 1 4.9514 -0.3419 10.0324 44 1 3.8719 0.7280 11.9671 45 1 1.7257 1.8998 11.6959 46 1 0.6481 2.0059 9.4868 47 1 3.0957 -0.1728 6.1610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674672349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:48 Heat of formation + Delta-G solvation = 37.939198 kcal Electronic energy + Delta-G solvation = -27753.977819 eV Core-core repulsion = 23901.855214 eV Total energy + Delta-G solvation = -3852.122604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04179 -39.69235 -38.88661 -36.95514 -34.18984 -33.72806 -32.76687 -31.72925 -31.26482 -29.75613 -29.07612 -28.24234 -25.34848 -24.57599 -24.34596 -23.32610 -22.33931 -21.96327 -20.45901 -19.36713 -18.44252 -17.55357 -17.29494 -16.91754 -16.65598 -15.63712 -15.48556 -15.16028 -14.81738 -14.65651 -14.41826 -14.29929 -14.12970 -14.05502 -13.75955 -13.46974 -13.28498 -13.16191 -12.84508 -12.64440 -12.48095 -12.01489 -11.79218 -11.67504 -11.41449 -11.33457 -10.97790 -10.84090 -10.65546 -10.53868 -10.34348 -10.26038 -10.00698 -9.88143 -9.75319 -9.60816 -9.37991 -8.97493 -8.90349 -8.59018 -7.03274 -5.80649 -3.10397 0.05284 0.54466 0.97812 1.39019 2.75216 3.10396 3.35494 3.41926 3.47204 3.48602 3.70374 3.85394 4.11550 4.34339 4.41767 4.47210 4.53631 4.56066 4.63305 4.76001 4.86594 4.98188 5.09815 5.15752 5.31559 5.43429 5.47521 5.58660 5.59331 5.60320 5.62228 5.70049 5.78197 5.97938 6.02474 6.08847 6.10401 6.14779 6.17174 6.24844 6.35833 6.40660 6.52623 6.58201 6.68158 6.84736 7.03895 7.46658 7.54371 7.66631 8.20034 8.37719 9.49132 10.03868 10.38700 11.41829 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.001907 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.661270 B =14682.268014 C =15203.497761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.167 3.833 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.711 5.711 17 C 0.559 3.441 18 O -0.534 6.534 19 C -0.174 4.174 20 C 0.133 3.867 21 N -0.480 5.480 22 C 0.127 3.873 23 C -0.104 4.104 24 C -0.042 4.042 25 C -0.107 4.107 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.109 4.109 30 C -0.011 4.011 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.397 0.603 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 6.083 29.280 30.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.071 0.929 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.109 0.891 15 C -0.218 4.218 16 N -0.363 5.363 17 C 0.344 3.656 18 O -0.411 6.411 19 C -0.180 4.180 20 C -0.025 4.025 21 N -0.187 5.187 22 C -0.031 4.031 23 C -0.106 4.106 24 C -0.043 4.043 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.135 4.135 29 C -0.127 4.127 30 C -0.037 4.037 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.234 0.766 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.451 6.197 29.043 30.028 hybrid contribution 0.526 -0.060 -0.909 1.052 sum -3.924 6.138 28.134 29.062 Atomic orbital electron populations 1.22553 0.99280 1.01349 0.99777 1.20368 0.92224 0.95641 0.86107 0.92942 1.42444 1.78216 1.10778 1.04785 1.19220 1.36985 0.93944 0.87107 0.91095 1.24744 1.01922 0.95986 0.98118 1.69655 1.50600 1.08617 1.29029 0.86182 0.77811 0.78575 0.83545 1.21697 1.21769 1.20763 1.21411 0.99151 0.92972 0.83333 0.89135 1.22148 1.01621 0.95622 1.02411 1.46190 1.25611 1.56243 1.08269 1.17983 0.84562 0.80108 0.82917 1.90788 1.22109 1.42832 1.85396 1.21069 0.98023 1.03494 0.95384 1.23081 0.91207 0.90724 0.97520 1.67688 1.33729 1.18336 0.98971 1.23084 0.91009 0.93747 0.95222 1.19735 0.96673 1.00855 0.93349 1.18578 0.95078 0.99203 0.91437 1.21328 0.94666 0.98492 0.98046 1.21143 1.00091 0.99522 0.92567 1.21276 0.95665 0.97634 0.98940 1.21101 0.95793 0.99448 0.97194 1.21205 0.99959 0.99359 0.92194 1.21815 0.98819 0.93087 0.89974 0.92218 0.92696 0.94994 0.77749 0.93420 0.92424 0.90323 0.93050 0.76591 0.82123 0.82071 0.85374 0.85577 0.85866 0.85654 0.85532 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.01 37.16 0.33 -2.41 16 2 C 0.17 3.14 2.93 -67.93 -0.20 2.94 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -17.27 5.03 -53.42 -0.27 -17.53 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.32 5.50 -17.44 -0.10 -0.42 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.28 2.62 -67.93 -0.18 2.10 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.16 -2.64 9.00 37.16 0.33 -2.31 16 16 N -0.71 -9.64 4.94 -54.74 -0.27 -9.91 16 17 C 0.56 8.05 7.75 -12.32 -0.10 7.95 16 18 O -0.53 -9.51 16.08 5.32 0.09 -9.43 16 19 C -0.17 -2.05 5.89 -104.86 -0.62 -2.67 16 20 C 0.13 1.37 10.71 -17.09 -0.18 1.19 16 21 N -0.48 -5.05 10.33 -12.64 -0.13 -5.18 16 22 C 0.13 1.14 10.59 -17.13 -0.18 0.96 16 23 C -0.10 -0.98 5.89 -104.80 -0.62 -1.60 16 24 C -0.04 -0.36 5.88 -104.89 -0.62 -0.97 16 25 C -0.11 -0.88 9.44 -39.25 -0.37 -1.25 16 26 C -0.12 -0.81 10.03 -39.63 -0.40 -1.20 16 27 C -0.12 -0.73 10.04 -39.52 -0.40 -1.13 16 28 C -0.12 -0.72 10.03 -39.63 -0.40 -1.12 16 29 C -0.11 -0.75 9.44 -39.26 -0.37 -1.12 16 30 C -0.01 -0.12 9.07 -38.52 -0.35 -0.47 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 33 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 34 H 0.39 9.83 5.77 -40.82 -0.24 9.59 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 37 H 0.08 1.45 6.29 -51.93 -0.33 1.13 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 4.36 4.63 -40.82 -0.19 4.17 16 40 H 0.16 1.31 6.41 -52.49 -0.34 0.97 16 41 H 0.16 0.98 6.21 -52.48 -0.33 0.65 16 42 H 0.13 0.99 6.27 -52.49 -0.33 0.66 16 43 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.13 0.61 6.23 -52.49 -0.33 0.28 16 47 H 0.15 1.59 5.99 -52.49 -0.31 1.28 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -32.72 383.53 -9.52 -42.24 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.87 Total: 12.06 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -4.55 Total: -8.20 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.05 Total: -59.52 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.72 -9.52 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.179 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds