Wall clock time and date at job start Tue Mar 31 2020 23:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47178 * 2 1 4 4 N 1.46497 * 109.47407 * 239.99236 * 2 1 3 5 5 C 1.36943 * 119.99907 * 85.00063 * 4 2 1 6 6 H 1.08007 * 119.99210 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46996 * 89.99994 * 9 7 5 11 11 H 1.48504 * 109.46825 * 209.99842 * 9 7 5 12 12 H 1.48498 * 109.46826 * 329.99555 * 9 7 5 13 13 C 1.53006 * 109.46773 * 119.99648 * 2 1 3 14 14 H 1.08998 * 109.47210 * 184.99742 * 13 2 1 15 15 C 1.53002 * 109.47208 * 64.99903 * 13 2 1 16 16 N 1.46498 * 109.47025 * 305.00168 * 13 2 1 17 17 C 1.34782 * 119.99543 * 205.00017 * 16 13 2 18 18 O 1.21552 * 120.00278 * 359.97438 * 17 16 13 19 19 C 1.47861 * 119.99730 * 179.97438 * 17 16 13 20 20 C 1.39623 * 120.50035 * 359.97438 * 19 17 16 21 21 N 1.31696 * 120.82906 * 179.74106 * 20 19 17 22 22 C 1.31816 * 122.01307 * 0.26185 * 21 20 19 23 23 C 1.39395 * 120.91613 * 359.97438 * 22 21 20 24 24 C 1.48412 * 120.46761 * 179.97438 * 23 22 21 25 25 C 1.39334 * 120.11674 * 179.72920 * 24 23 22 26 26 C 1.38021 * 119.87612 * 179.74379 * 25 24 23 27 27 C 1.38325 * 120.11721 * 0.53625 * 26 25 24 28 28 C 1.38317 * 120.24217 * 359.71479 * 27 26 25 29 29 C 1.38014 * 120.12430 * 0.03052 * 28 27 26 30 30 C 1.39517 * 119.06581 * 0.02562 * 23 22 21 31 31 H 1.09005 * 109.46697 * 59.99998 * 1 2 3 32 32 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47072 * 300.00767 * 1 2 3 34 34 H 0.96999 * 120.00386 * 265.01002 * 4 2 1 35 35 H 0.97004 * 120.00107 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46903 * 300.00027 * 15 13 2 37 37 H 1.09001 * 109.46791 * 59.99696 * 15 13 2 38 38 H 1.09001 * 109.47093 * 179.97438 * 15 13 2 39 39 H 0.96998 * 120.00230 * 24.99837 * 16 13 2 40 40 H 1.08002 * 119.58938 * 0.02772 * 20 19 17 41 41 H 1.08006 * 119.53797 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.06059 * 0.02562 * 25 24 23 43 43 H 1.07994 * 119.93974 * 180.27041 * 26 25 24 44 44 H 1.08004 * 119.87346 * 179.74434 * 27 26 25 45 45 H 1.08002 * 119.93408 * 180.02562 * 28 27 26 46 46 H 1.07996 * 120.06629 * 179.97438 * 29 28 27 47 47 H 1.07987 * 120.91376 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4241 7 6 2.6115 -0.6623 -3.5091 8 7 2.9236 -1.9395 -3.4502 9 14 2.7906 0.2697 -5.1182 10 1 4.1533 0.8538 -5.2028 11 1 2.5796 -0.6615 -6.2556 12 1 1.7812 1.3574 -5.1751 13 6 2.0400 -0.7212 1.2494 14 1 3.1262 -0.6444 1.2953 15 6 1.6351 -2.1954 1.1882 16 7 1.4557 -0.1035 2.4424 17 6 2.0911 -0.1937 3.6276 18 8 3.1486 -0.7878 3.7067 19 6 1.5018 0.4302 4.8317 20 6 0.2879 1.1156 4.7526 21 7 -0.2453 1.6694 5.8219 22 6 0.3357 1.6091 7.0035 23 6 1.5518 0.9487 7.1708 24 6 2.1976 0.8874 8.5056 25 6 3.4104 0.2204 8.6656 26 6 4.0092 0.1710 9.9082 27 6 3.4019 0.7726 10.9957 28 6 2.1953 1.4315 10.8435 29 6 1.5903 1.4915 9.6045 30 6 2.1540 0.3470 6.0654 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1524 35 1 3.2470 -2.3969 -4.2421 36 1 0.5488 -2.2723 1.1422 37 1 2.0698 -2.6550 0.3005 38 1 1.9988 -2.7093 2.0780 39 1 0.6117 0.3703 2.3793 40 1 -0.2224 1.1887 3.8036 41 1 -0.1375 2.0772 7.8541 42 1 3.8833 -0.2531 7.8179 43 1 4.9514 -0.3419 10.0324 44 1 3.8719 0.7280 11.9671 45 1 1.7257 1.8998 11.6959 46 1 0.6481 2.0059 9.4868 47 1 3.0957 -0.1728 6.1610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674672349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:47 Heat of formation + Delta-G solvation = 18.104537 kcal Electronic energy + Delta-G solvation = -27754.837914 eV Core-core repulsion = 23901.855214 eV Total energy + Delta-G solvation = -3852.982700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.90674 -40.67172 -39.59120 -38.42288 -35.70878 -34.53979 -33.93955 -33.11384 -31.86540 -30.98121 -30.03523 -29.78974 -26.33811 -26.10146 -25.25959 -24.66123 -23.20845 -22.59503 -21.49180 -20.75770 -19.58507 -19.16559 -18.23815 -17.61593 -17.46256 -16.71914 -16.65125 -16.31106 -16.19548 -15.81259 -15.51345 -15.36830 -15.21503 -14.92174 -14.67948 -14.66052 -14.44375 -13.94972 -13.94160 -13.73591 -13.49830 -13.37071 -13.09790 -13.00922 -12.79910 -12.65024 -12.29936 -12.13238 -12.03672 -11.91518 -11.67694 -11.62118 -11.36587 -11.34662 -10.95323 -10.72905 -10.56856 -10.17751 -9.88451 -9.20439 -9.02855 -7.93210 -5.21943 -0.65804 -0.27184 0.47450 0.76279 1.48532 1.49982 1.58006 1.74503 1.94240 2.58132 2.63980 3.03002 3.13578 3.40652 3.40946 3.63715 3.66882 3.70488 3.84427 3.89961 3.97970 4.06016 4.07484 4.19385 4.30331 4.31462 4.39649 4.57277 4.57713 4.59946 4.68340 4.85418 4.86261 4.90663 4.95777 4.98488 5.04471 5.13092 5.20190 5.24459 5.36517 5.44509 5.54295 5.55033 5.58916 5.60137 5.64022 6.04398 6.28838 6.41309 6.70948 7.07547 7.35666 8.09707 8.32722 9.30225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.001907 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.661270 B =14682.268014 C =15203.497761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.165 3.835 3 H 0.049 0.951 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.268 1.268 13 C 0.150 3.850 14 H 0.061 0.939 15 C -0.151 4.151 16 N -0.697 5.697 17 C 0.562 3.438 18 O -0.575 6.575 19 C -0.188 4.188 20 C 0.136 3.864 21 N -0.491 5.491 22 C 0.133 3.867 23 C -0.100 4.100 24 C -0.062 4.062 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.111 4.111 30 C -0.023 4.023 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.412 0.588 40 H 0.183 0.817 41 H 0.194 0.806 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 8.127 31.730 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.067 0.933 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.218 1.218 11 H -0.224 1.224 12 H -0.192 1.192 13 C 0.044 3.956 14 H 0.079 0.921 15 C -0.209 4.209 16 N -0.351 5.351 17 C 0.349 3.651 18 O -0.456 6.456 19 C -0.193 4.193 20 C -0.022 4.022 21 N -0.198 5.198 22 C -0.024 4.024 23 C -0.102 4.102 24 C -0.063 4.063 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.129 4.129 30 C -0.049 4.049 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.200 0.800 41 H 0.211 0.789 42 H 0.139 0.861 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.169 0.831 46 H 0.167 0.833 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.505 8.298 31.532 33.248 hybrid contribution 1.167 -0.641 -1.436 1.958 sum -5.338 7.657 30.096 31.511 Atomic orbital electron populations 1.22384 0.96473 1.01791 1.01330 1.20544 0.94000 0.94942 0.84951 0.93294 1.42641 1.78639 1.10528 1.05761 1.19612 1.34945 0.94283 0.88040 0.90384 1.25529 1.02982 0.96871 1.01432 1.69813 1.52580 1.10161 1.29415 0.85170 0.77753 0.77481 0.79527 1.21830 1.22424 1.19238 1.20961 0.97554 0.93198 0.83871 0.92124 1.22043 1.02481 0.95172 1.01218 1.45907 1.26009 1.56052 1.07105 1.18363 0.83885 0.79300 0.83567 1.90769 1.24021 1.44740 1.86026 1.20820 0.99141 1.05092 0.94254 1.23348 0.90439 0.89841 0.98528 1.67790 1.33923 1.18666 0.99409 1.23605 0.90482 0.92643 0.95698 1.19849 0.96780 1.00203 0.93356 1.18659 0.95542 1.00566 0.91531 1.21444 0.95219 0.99189 0.98578 1.21376 1.00750 0.99908 0.92444 1.21630 0.95754 0.96687 0.99570 1.21473 0.95645 0.98960 0.97758 1.21505 1.00677 0.98799 0.91879 1.21885 0.98880 0.93577 0.90520 0.93633 0.92820 0.90470 0.78930 0.94120 0.90679 0.92701 0.93007 0.74756 0.80010 0.78939 0.86129 0.84415 0.83665 0.83062 0.83297 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.01 71.98 0.65 -4.21 16 2 C 0.16 6.09 2.93 44.99 0.13 6.23 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 N -0.73 -35.75 5.03 -322.93 -1.63 -37.37 16 5 C -0.24 -12.83 9.93 84.03 0.83 -12.00 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 8 N -0.97 -59.01 13.06 21.65 0.28 -58.72 16 9 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.15 5.06 2.62 44.99 0.12 5.17 16 14 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 15 C -0.15 -5.05 9.00 71.98 0.65 -4.40 16 16 N -0.70 -18.25 4.94 -445.38 -2.20 -20.45 16 17 C 0.56 16.20 7.75 86.79 0.67 16.87 16 18 O -0.58 -21.31 16.08 -3.88 -0.06 -21.37 16 19 C -0.19 -4.31 5.89 -20.02 -0.12 -4.42 16 20 C 0.14 2.54 10.71 85.05 0.91 3.45 16 21 N -0.49 -9.07 10.33 -193.91 -2.00 -11.07 16 22 C 0.13 2.05 10.59 84.97 0.90 2.95 16 23 C -0.10 -1.78 5.89 -19.98 -0.12 -1.90 16 24 C -0.06 -0.99 5.88 -20.04 -0.12 -1.10 16 25 C -0.13 -2.08 9.44 22.48 0.21 -1.87 16 26 C -0.13 -1.66 10.03 22.24 0.22 -1.44 16 27 C -0.12 -1.21 10.04 22.31 0.22 -0.99 16 28 C -0.12 -1.12 10.03 22.24 0.22 -0.90 16 29 C -0.11 -1.24 9.44 22.48 0.21 -1.03 16 30 C -0.02 -0.50 9.07 22.96 0.21 -0.29 16 31 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.65 6.56 -2.39 -0.02 1.64 16 33 H 0.08 1.62 6.29 -2.39 -0.02 1.61 16 34 H 0.38 19.78 5.77 -92.71 -0.54 19.24 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.07 2.22 6.56 -2.39 -0.02 2.20 16 37 H 0.05 2.11 6.29 -2.39 -0.02 2.09 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.41 8.03 4.63 -92.71 -0.43 7.60 16 40 H 0.18 2.39 6.41 -2.91 -0.02 2.37 16 41 H 0.19 1.61 6.21 -2.91 -0.02 1.59 16 42 H 0.12 2.03 6.27 -2.91 -0.02 2.01 16 43 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 44 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 46 H 0.15 0.87 6.23 -2.91 -0.02 0.85 16 47 H 0.14 3.26 5.99 -2.92 -0.02 3.24 16 Total: -1.00 -72.57 383.53 2.76 -69.81 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.06 Total: 34.99 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 6.28 Total: -3.72 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.55 Total: -127.62 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.57 2.76 -69.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.914 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds