Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21553 * 120.00125 * 0.02562 * 5 4 2 7 7 C 1.47859 * 119.99879 * 180.02562 * 5 4 2 8 8 C 1.39621 * 120.49938 * 359.72079 * 7 5 4 9 9 N 1.31700 * 120.82517 * 179.69795 * 8 7 5 10 10 C 1.31810 * 122.01757 * 0.59809 * 9 8 7 11 11 C 1.39402 * 120.91168 * 359.69727 * 10 9 8 12 12 C 1.48405 * 120.46420 * 179.97438 * 11 10 9 13 13 C 1.39332 * 120.11839 * 179.74521 * 12 11 10 14 14 C 1.38024 * 119.87737 * 179.76848 * 13 12 11 15 15 C 1.38321 * 120.12029 * 0.53087 * 14 13 12 16 16 C 1.38318 * 120.24093 * 359.69487 * 15 14 13 17 17 C 1.38015 * 120.12103 * 0.04988 * 16 15 14 18 18 C 1.39506 * 119.06542 * 359.97438 * 11 10 9 19 19 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 20 20 H 1.08995 * 109.47216 * 299.99814 * 19 2 1 21 21 C 1.52999 * 109.47083 * 179.97438 * 19 2 1 22 22 N 1.46498 * 109.47065 * 59.99703 * 19 2 1 23 23 C 1.36943 * 119.99752 * 204.72207 * 22 19 2 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 19 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 19 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47294 * 90.00155 * 27 25 23 29 29 H 1.48499 * 109.47218 * 210.00015 * 27 25 23 30 30 H 1.48496 * 109.47166 * 329.99846 * 27 25 23 31 31 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 32 32 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 33 33 H 1.08994 * 109.46974 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 35 35 H 1.07993 * 119.58763 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.54079 * 179.71562 * 10 9 8 37 37 H 1.07997 * 120.05885 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.93662 * 180.27267 * 14 13 12 39 39 H 1.07995 * 119.87315 * 179.72306 * 15 14 13 40 40 H 1.08004 * 119.93777 * 180.02562 * 16 15 14 41 41 H 1.08007 * 120.06344 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.91317 * 179.97438 * 18 11 10 43 43 H 1.08995 * 109.47098 * 300.00077 * 21 19 2 44 44 H 1.09003 * 109.47054 * 59.99725 * 21 19 2 45 45 H 1.08996 * 109.47245 * 179.97438 * 21 19 2 46 46 H 0.97001 * 120.00384 * 25.00562 * 22 19 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8577 1.1608 2.4118 7 6 2.6406 -0.7154 3.5641 8 6 2.9705 -2.0712 3.5144 9 7 3.4162 -2.6969 4.5841 10 6 3.5598 -2.0849 5.7427 11 6 3.2480 -0.7334 5.8821 12 6 3.4129 -0.0544 7.1914 13 6 3.1040 1.2981 7.3214 14 6 3.2547 1.9235 8.5425 15 6 3.7219 1.2128 9.6334 16 6 4.0345 -0.1288 9.5088 17 6 3.8825 -0.7654 8.2937 18 6 2.7786 -0.0283 4.7737 19 6 2.0399 -0.7211 -1.2494 20 1 1.6766 -1.7488 -1.2495 21 6 3.5699 -0.7206 -1.2498 22 7 1.5515 -0.0304 -2.4454 23 6 1.4261 -0.7121 -3.6265 24 1 1.6830 -1.7600 -3.6750 25 6 0.9687 -0.0563 -4.7612 26 7 0.6561 1.2210 -4.7020 27 14 0.7969 -0.9863 -6.3720 28 1 -0.5653 -1.5705 -6.4635 29 1 1.0128 -0.0538 -7.5074 30 1 1.8066 -2.0738 -6.4259 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.2491 -1.6319 1.1523 35 1 2.8632 -2.6124 2.5861 36 1 3.9244 -2.6381 6.5955 37 1 2.7434 1.8549 6.4692 38 1 3.0114 2.9707 8.6454 39 1 3.8425 1.7072 10.5859 40 1 4.3985 -0.6791 10.3639 41 1 4.1273 -1.8130 8.1973 42 1 2.5277 1.0195 4.8482 43 1 3.9329 0.3071 -1.2499 44 1 3.9337 -1.2343 -0.3598 45 1 3.9332 -1.2347 -2.1396 46 1 1.3209 0.9108 -2.4018 47 1 0.3362 1.6792 -5.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674672357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = 33.549193 kcal Electronic energy + Delta-G solvation = -27743.035048 eV Core-core repulsion = 23890.722079 eV Total energy + Delta-G solvation = -3852.312969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.03789 -39.67257 -38.87076 -36.78447 -34.20348 -33.73408 -32.76154 -31.70203 -31.27012 -29.83177 -29.15304 -28.40814 -25.25415 -24.53470 -24.01882 -23.14217 -22.13168 -21.95529 -20.37937 -20.08161 -18.44006 -17.48342 -17.33070 -16.91685 -16.63213 -15.63814 -15.54299 -15.12862 -14.83064 -14.61461 -14.42163 -14.14436 -14.09784 -13.78504 -13.65541 -13.35906 -13.29093 -13.15752 -13.05559 -12.66981 -12.44243 -11.91248 -11.78531 -11.73475 -11.41382 -11.22059 -10.99348 -10.84612 -10.73231 -10.65419 -10.33037 -10.23913 -9.93410 -9.87321 -9.76700 -9.61333 -9.38057 -9.07210 -8.83777 -8.58962 -7.01883 -5.79988 -3.09810 0.05368 0.54519 0.97730 1.39082 2.75381 3.09566 3.35532 3.41518 3.47005 3.48529 3.70481 3.85580 4.11604 4.34185 4.41935 4.47184 4.53395 4.56164 4.63626 4.75953 4.86667 4.98066 5.09385 5.15683 5.27894 5.46235 5.47630 5.58713 5.61079 5.63690 5.69126 5.72113 5.85883 5.97887 6.07422 6.08746 6.14068 6.14826 6.18010 6.34959 6.38384 6.47642 6.52559 6.57355 6.77890 6.88812 6.99480 7.46864 7.54668 7.66308 8.19974 8.37499 9.49019 10.03756 10.38787 11.42276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.001894 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.387018 B =14782.039125 C =15378.304034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.088 0.912 4 N -0.708 5.708 5 C 0.560 3.440 6 O -0.534 6.534 7 C -0.174 4.174 8 C 0.133 3.867 9 N -0.480 5.480 10 C 0.127 3.873 11 C -0.104 4.104 12 C -0.042 4.042 13 C -0.107 4.107 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.011 4.011 19 C 0.168 3.832 20 H 0.051 0.949 21 C -0.165 4.165 22 N -0.717 5.717 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.012 4.012 26 N -0.930 5.930 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.397 0.603 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.150 0.850 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.386 0.614 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -4.465 29.243 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.106 0.894 4 N -0.359 5.359 5 C 0.346 3.654 6 O -0.412 6.412 7 C -0.180 4.180 8 C -0.025 4.025 9 N -0.188 5.188 10 C -0.031 4.031 11 C -0.106 4.106 12 C -0.043 4.043 13 C -0.125 4.125 14 C -0.133 4.133 15 C -0.135 4.135 16 C -0.135 4.135 17 C -0.127 4.127 18 C -0.037 4.037 19 C 0.058 3.942 20 H 0.069 0.931 21 C -0.225 4.225 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.208 4.208 26 N -0.578 5.578 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.232 0.768 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.168 0.832 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.220 0.780 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.506 -4.617 29.007 30.084 hybrid contribution -0.222 0.276 -0.926 0.991 sum 6.284 -4.342 28.081 29.101 Atomic orbital electron populations 1.22057 0.94689 1.01907 1.02460 1.21415 0.94592 0.97659 0.83221 0.89440 1.46008 1.66311 1.13896 1.09700 1.17944 0.78145 0.86550 0.82800 1.90788 1.50253 1.15330 1.84786 1.21065 1.05390 0.95911 0.95588 1.23089 0.91614 0.90583 0.97217 1.67686 1.13013 1.38872 0.99179 1.23081 0.93635 0.90946 0.95395 1.19731 1.02254 0.95078 0.93560 1.18577 1.00383 0.93626 0.91704 1.21327 0.99235 0.93786 0.98188 1.21144 0.99279 1.00235 0.92670 1.21273 0.98813 0.94559 0.98869 1.21102 1.00076 0.94967 0.97390 1.21207 0.99262 0.99941 0.92315 1.21813 0.91141 1.00809 0.89955 1.20397 0.92138 0.95617 0.86086 0.93058 1.22461 0.99008 1.01177 0.99892 1.42284 1.78210 1.10753 1.04706 1.19188 1.37054 0.93878 0.86944 0.91116 1.24745 1.02035 0.95958 0.98050 1.69664 1.50663 1.08560 1.28925 0.86193 0.77753 0.78563 0.83660 1.21726 1.21801 1.20794 0.93410 0.89926 0.92966 0.76812 0.82055 0.82088 0.85379 0.85579 0.85868 0.85654 0.85535 0.83202 0.93363 0.94630 0.92526 0.78023 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 37.16 0.35 -2.24 16 2 C 0.14 2.25 2.21 -67.93 -0.15 2.10 16 3 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 4 N -0.71 -9.42 4.34 -54.75 -0.24 -9.66 16 5 C 0.56 7.95 7.75 -12.32 -0.10 7.86 16 6 O -0.53 -9.43 16.08 5.32 0.09 -9.35 16 7 C -0.17 -2.02 5.89 -104.86 -0.62 -2.64 16 8 C 0.13 1.36 10.71 -17.09 -0.18 1.17 16 9 N -0.48 -5.02 10.33 -12.64 -0.13 -5.15 16 10 C 0.13 1.13 10.59 -17.13 -0.18 0.95 16 11 C -0.10 -0.98 5.89 -104.80 -0.62 -1.60 16 12 C -0.04 -0.36 5.88 -104.90 -0.62 -0.97 16 13 C -0.11 -0.88 9.44 -39.25 -0.37 -1.25 16 14 C -0.12 -0.80 10.03 -39.63 -0.40 -1.20 16 15 C -0.12 -0.73 10.04 -39.52 -0.40 -1.12 16 16 C -0.12 -0.72 10.03 -39.63 -0.40 -1.11 16 17 C -0.11 -0.75 9.44 -39.26 -0.37 -1.12 16 18 C -0.01 -0.12 9.07 -38.53 -0.35 -0.47 16 19 C 0.17 3.12 2.52 -67.93 -0.17 2.95 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 C -0.17 -2.85 9.33 37.16 0.35 -2.50 16 22 N -0.72 -17.08 4.43 -53.43 -0.24 -17.32 16 23 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 27 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.59 7.44 -51.93 -0.39 1.21 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 4.18 6.45 -40.82 -0.26 3.92 16 35 H 0.16 1.27 6.41 -52.49 -0.34 0.94 16 36 H 0.16 0.98 6.21 -52.49 -0.33 0.65 16 37 H 0.13 0.98 6.27 -52.49 -0.33 0.65 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 40 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.13 0.60 6.23 -52.48 -0.33 0.28 16 42 H 0.15 1.58 5.99 -52.49 -0.31 1.27 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.39 9.92 7.58 -40.82 -0.31 9.61 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -32.47 391.23 -9.69 -42.16 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.30 Total: 11.43 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.47 Total: -8.16 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.12 Total: -58.92 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.47 -9.69 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674672357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.708 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds