Wall clock time and date at job start Tue Mar 31 2020 22:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.36840 * 2 1 4 4 C 1.54374 * 110.51428 * 237.57592 * 2 1 3 5 5 H 1.08995 * 110.32784 * 336.21629 * 4 2 1 6 6 N 1.46511 * 110.32044 * 98.32185 * 4 2 1 7 7 C 1.34774 * 119.99758 * 205.00132 * 6 4 2 8 8 O 1.21289 * 119.99831 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99962 * 179.97438 * 7 6 4 10 10 H 1.08994 * 110.48784 * 317.29869 * 9 7 6 11 11 C 1.54102 * 110.54879 * 80.00137 * 9 7 6 12 12 N 1.47052 * 103.86343 * 118.59277 * 11 9 7 13 13 C 1.33948 * 109.17870 * 0.02562 * 12 11 9 14 14 O 1.21587 * 123.03962 * 179.97438 * 13 12 11 15 15 N 1.33942 * 113.91702 * 359.97438 * 13 12 11 16 16 C 1.54259 * 105.06250 * 217.31336 * 4 2 1 17 17 C 1.54375 * 105.05940 * 0.02562 * 16 4 2 18 18 N 1.48558 * 104.59895 * 23.84993 * 17 16 4 19 19 C 1.46898 * 110.99989 * 200.96688 * 18 17 16 20 20 C 1.50706 * 109.46984 * 285.41304 * 19 18 17 21 21 O 1.21295 * 119.99863 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00080 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99873 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99509 * 359.71860 * 23 22 20 25 25 C 1.38950 * 120.00048 * 179.72298 * 23 22 20 26 26 N 1.31413 * 119.99930 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99918 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47112 * 89.99702 * 27 25 23 29 29 H 1.48498 * 109.47011 * 209.99970 * 27 25 23 30 30 H 1.48499 * 109.47134 * 329.99591 * 27 25 23 31 31 H 1.09005 * 109.47116 * 299.10646 * 1 2 3 32 32 H 1.08994 * 109.46710 * 59.10473 * 1 2 3 33 33 H 1.09004 * 109.46675 * 179.10966 * 1 2 3 34 34 H 0.96991 * 119.99837 * 24.99955 * 6 4 2 35 35 H 1.08998 * 110.54946 * 237.18927 * 11 9 7 36 36 H 1.09005 * 110.54695 * 359.85586 * 11 9 7 37 37 H 0.96999 * 125.41170 * 179.97438 * 12 11 9 38 38 H 0.97003 * 125.41066 * 179.97438 * 15 13 12 39 39 H 1.09011 * 110.32043 * 118.89643 * 16 4 2 40 40 H 1.08998 * 110.33153 * 241.00248 * 16 4 2 41 41 H 1.09001 * 110.40755 * 265.06376 * 17 16 4 42 42 H 1.09005 * 110.41358 * 142.62964 * 17 16 4 43 43 H 1.09004 * 109.47320 * 165.41709 * 19 18 17 44 44 H 1.09001 * 109.47291 * 45.41005 * 19 18 17 45 45 H 0.96996 * 119.99858 * 359.72084 * 22 20 19 46 46 H 0.96999 * 119.99993 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0710 -0.7752 -1.2204 5 1 1.3277 -1.4890 -1.5754 6 7 2.4355 0.1541 -2.2928 7 6 2.4439 -0.2648 -3.5737 8 8 2.1492 -1.4111 -3.8387 9 6 2.8183 0.6912 -4.6768 10 1 2.3513 1.6626 -4.5145 11 6 4.3496 0.8361 -4.7705 12 7 4.6670 0.3545 -6.1232 13 6 3.5344 -0.0138 -6.7361 14 8 3.5065 -0.4516 -7.8701 15 7 2.4354 0.1438 -5.9869 16 6 3.3211 -1.5161 -0.7028 17 6 3.4298 -1.1267 0.7871 18 7 2.0478 -0.7456 1.1764 19 6 2.0536 0.1023 2.3759 20 6 2.3470 -0.7439 3.5879 21 8 2.5326 -1.9363 3.4645 22 7 2.4023 -0.1762 4.8089 23 6 2.6698 -0.9460 5.9114 24 1 2.8317 -2.0082 5.8019 25 6 2.7325 -0.3597 7.1696 26 7 2.5359 0.9328 7.3027 27 14 3.0963 -1.4087 8.6718 28 1 4.5633 -1.4604 8.8960 29 1 2.4342 -0.8160 9.8615 30 1 2.5804 -2.7838 8.4520 31 1 -0.3633 0.4999 0.8979 32 1 -0.3632 0.5277 -0.8818 33 1 -0.3633 -1.0276 -0.0160 34 1 2.6708 1.0709 -2.0808 35 1 4.6428 1.8798 -4.6573 36 1 4.8391 0.2184 -4.0174 37 1 5.5553 0.3112 -6.5103 38 1 1.5306 -0.0688 -6.2645 39 1 3.1913 -2.5938 -0.8036 40 1 4.2073 -1.1897 -1.2470 41 1 4.1065 -0.2811 0.9105 42 1 3.7706 -1.9767 1.3783 43 1 1.0785 0.5759 2.4909 44 1 2.8207 0.8700 2.2745 45 1 2.2572 0.7779 4.9071 46 1 2.5793 1.3421 8.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689314830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:58 Heat of formation + Delta-G solvation = -71.090087 kcal Electronic energy + Delta-G solvation = -29403.946393 eV Core-core repulsion = 25136.246661 eV Total energy + Delta-G solvation = -4267.699732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77082 -40.18433 -38.95298 -37.69095 -36.58024 -34.73915 -33.87245 -33.46460 -31.61018 -31.36158 -31.08002 -29.50865 -26.58713 -25.57176 -24.27680 -24.07894 -22.22331 -21.69987 -20.69298 -20.44217 -19.19955 -18.43198 -18.02204 -17.91434 -16.91897 -16.59297 -16.08662 -15.90791 -15.49943 -15.33300 -14.88536 -14.83833 -14.58187 -14.36969 -14.20753 -13.99208 -13.85136 -13.57292 -13.47747 -13.27748 -12.94230 -12.48278 -12.28296 -11.97587 -11.76903 -11.56596 -11.45458 -11.34975 -11.16379 -10.89173 -10.79918 -10.69643 -10.56289 -10.41466 -10.24340 -9.85774 -9.52609 -9.41300 -9.35356 -8.60376 -8.10160 -7.98218 -6.44465 -3.85138 1.98940 2.26458 2.52568 2.85962 3.15602 3.24572 3.30528 3.50077 3.68291 3.85736 3.90832 4.09886 4.23418 4.25006 4.33924 4.59861 4.66817 4.85280 4.90107 5.08142 5.09631 5.15008 5.20938 5.25555 5.34218 5.53657 5.58546 5.69174 5.79682 5.80493 5.83745 6.02038 6.15420 6.19203 6.26443 6.33285 6.52742 6.67350 6.88289 6.99576 7.02734 7.12369 7.52763 7.73197 8.03534 8.18820 8.59103 9.15873 9.51644 10.03678 10.73319 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001872 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.895194 B =14950.144962 C =15099.395544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.054 0.946 4 C 0.145 3.855 5 H 0.104 0.896 6 N -0.717 5.717 7 C 0.501 3.499 8 O -0.516 6.516 9 C 0.103 3.897 10 H 0.118 0.882 11 C 0.104 3.896 12 N -0.739 5.739 13 C 0.706 3.294 14 O -0.583 6.583 15 N -0.714 5.714 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.476 5.476 19 C 0.036 3.964 20 C 0.445 3.555 21 O -0.575 6.575 22 N -0.566 5.566 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.433 0.567 38 H 0.435 0.565 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 8.570 -20.920 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 H 0.072 0.928 4 C 0.040 3.960 5 H 0.122 0.878 6 N -0.369 5.369 7 C 0.284 3.716 8 O -0.390 6.390 9 C -0.008 4.008 10 H 0.136 0.864 11 C -0.022 4.022 12 N -0.402 5.402 13 C 0.404 3.596 14 O -0.460 6.460 15 N -0.376 5.376 16 C -0.171 4.171 17 C -0.090 4.090 18 N -0.200 5.200 19 C -0.096 4.096 20 C 0.230 3.770 21 O -0.459 6.459 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.205 1.205 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.275 0.725 38 H 0.278 0.722 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.057 6.334 -21.455 22.395 hybrid contribution 0.699 1.394 0.952 1.827 sum 1.755 7.728 -20.503 21.981 Atomic orbital electron populations 1.21719 0.93138 1.03088 1.01467 1.22876 0.96837 0.95643 0.90373 0.92780 1.21827 0.97427 0.91145 0.85593 0.87840 1.46130 1.69756 1.15115 1.05933 1.20738 0.78187 0.89032 0.83648 1.90793 1.46527 1.18744 1.82918 1.21860 0.96509 0.97641 0.84774 0.86436 1.22256 0.91814 1.01914 0.86236 1.45046 1.09122 1.70371 1.15688 1.15859 0.81354 0.78130 0.84211 1.91018 1.85696 1.52062 1.17201 1.44817 1.09562 1.70097 1.13167 1.22738 0.97064 1.01667 0.95637 1.23160 0.89524 1.01461 0.94830 1.65113 1.18727 1.35593 1.00591 1.22072 1.01907 0.94503 0.91138 1.19668 0.84679 0.88738 0.83909 1.90523 1.54468 1.15335 1.85551 1.41855 1.62404 1.10839 1.05183 1.19692 1.44821 0.93999 0.84207 0.87928 1.25252 0.97484 0.96074 0.99166 1.69608 1.49982 1.09799 1.25038 0.85864 0.78451 0.79779 0.80245 1.20455 1.20936 1.19404 0.92052 0.92537 0.91356 0.76490 0.88488 0.89391 0.72455 0.72234 0.90163 0.91206 0.94264 0.88292 0.89253 0.93166 0.77573 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.34 37.16 0.35 -1.02 16 2 C 0.05 0.54 2.58 -66.06 -0.17 0.37 16 3 H 0.05 0.46 7.61 -51.92 -0.40 0.07 16 4 C 0.14 1.43 2.96 -66.55 -0.20 1.23 16 5 H 0.10 1.23 7.26 -51.93 -0.38 0.86 16 6 N -0.72 -4.56 5.03 -52.46 -0.26 -4.82 16 7 C 0.50 3.93 6.95 -10.99 -0.08 3.86 16 8 O -0.52 -6.65 16.21 5.55 0.09 -6.56 16 9 C 0.10 0.49 4.17 -68.20 -0.28 0.21 16 10 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 11 C 0.10 0.37 7.70 -3.17 -0.02 0.34 16 12 N -0.74 -4.76 6.37 -64.70 -0.41 -5.17 16 13 C 0.71 7.30 8.92 -88.40 -0.79 6.51 16 14 O -0.58 -8.70 18.05 5.29 0.10 -8.60 16 15 N -0.71 -5.59 5.60 -59.33 -0.33 -5.93 16 16 C -0.13 -1.48 6.79 -25.35 -0.17 -1.66 16 17 C 0.04 0.53 5.92 -2.19 -0.01 0.52 16 18 N -0.48 -7.08 4.66 -223.54 -1.04 -8.12 16 19 C 0.04 0.58 5.26 -4.97 -0.03 0.55 16 20 C 0.45 10.05 7.63 -10.98 -0.08 9.97 16 21 O -0.58 -15.10 14.80 5.54 0.08 -15.02 16 22 N -0.57 -13.84 5.29 -10.96 -0.06 -13.90 16 23 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 24 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 27 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 31 H 0.06 0.64 7.30 -51.93 -0.38 0.26 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.40 1.28 8.38 -40.82 -0.34 0.94 16 35 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 36 H 0.09 0.31 7.72 -51.93 -0.40 -0.09 16 37 H 0.43 2.08 8.96 -40.82 -0.37 1.72 16 38 H 0.44 3.19 8.96 -40.82 -0.37 2.82 16 39 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 40 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 41 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 42 H 0.10 1.72 7.24 -51.93 -0.38 1.34 16 43 H 0.09 1.31 7.17 -51.93 -0.37 0.94 16 44 H 0.05 0.72 7.77 -51.93 -0.40 0.32 16 45 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -37.61 381.47 -8.66 -46.27 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.54 Total: 10.57 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -1.73 Total: 13.11 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -1.38 Total: -61.20 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: 0.27 Total: -30.18 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.61 -8.66 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689314830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.824 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds