Wall clock time and date at job start Tue Mar 31 2020 22:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.36840 * 2 1 4 4 C 1.54374 * 110.51428 * 237.57592 * 2 1 3 5 5 H 1.08995 * 110.32784 * 336.21629 * 4 2 1 6 6 N 1.46511 * 110.32044 * 98.32185 * 4 2 1 7 7 C 1.34774 * 119.99758 * 205.00132 * 6 4 2 8 8 O 1.21289 * 119.99831 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99962 * 179.97438 * 7 6 4 10 10 H 1.08994 * 110.48784 * 317.29869 * 9 7 6 11 11 C 1.54102 * 110.54879 * 80.00137 * 9 7 6 12 12 N 1.47052 * 103.86343 * 118.59277 * 11 9 7 13 13 C 1.33948 * 109.17870 * 0.02562 * 12 11 9 14 14 O 1.21587 * 123.03962 * 179.97438 * 13 12 11 15 15 N 1.33942 * 113.91702 * 359.97438 * 13 12 11 16 16 C 1.54259 * 105.06250 * 217.31336 * 4 2 1 17 17 C 1.54375 * 105.05940 * 0.02562 * 16 4 2 18 18 N 1.48558 * 104.59895 * 23.84993 * 17 16 4 19 19 C 1.46898 * 110.99989 * 200.96688 * 18 17 16 20 20 C 1.50706 * 109.46984 * 285.41304 * 19 18 17 21 21 O 1.21295 * 119.99863 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00080 * 180.02562 * 20 19 18 23 23 C 1.37105 * 119.99873 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99509 * 359.71860 * 23 22 20 25 25 C 1.38950 * 120.00048 * 179.72298 * 23 22 20 26 26 N 1.31413 * 119.99930 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99918 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47112 * 89.99702 * 27 25 23 29 29 H 1.48498 * 109.47011 * 209.99970 * 27 25 23 30 30 H 1.48499 * 109.47134 * 329.99591 * 27 25 23 31 31 H 1.09005 * 109.47116 * 299.10646 * 1 2 3 32 32 H 1.08994 * 109.46710 * 59.10473 * 1 2 3 33 33 H 1.09004 * 109.46675 * 179.10966 * 1 2 3 34 34 H 0.96991 * 119.99837 * 24.99955 * 6 4 2 35 35 H 1.08998 * 110.54946 * 237.18927 * 11 9 7 36 36 H 1.09005 * 110.54695 * 359.85586 * 11 9 7 37 37 H 0.96999 * 125.41170 * 179.97438 * 12 11 9 38 38 H 0.97003 * 125.41066 * 179.97438 * 15 13 12 39 39 H 1.09011 * 110.32043 * 118.89643 * 16 4 2 40 40 H 1.08998 * 110.33153 * 241.00248 * 16 4 2 41 41 H 1.09001 * 110.40755 * 265.06376 * 17 16 4 42 42 H 1.09005 * 110.41358 * 142.62964 * 17 16 4 43 43 H 1.09004 * 109.47320 * 165.41709 * 19 18 17 44 44 H 1.09001 * 109.47291 * 45.41005 * 19 18 17 45 45 H 0.96996 * 119.99858 * 359.72084 * 22 20 19 46 46 H 0.96999 * 119.99993 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0710 -0.7752 -1.2204 5 1 1.3277 -1.4890 -1.5754 6 7 2.4355 0.1541 -2.2928 7 6 2.4439 -0.2648 -3.5737 8 8 2.1492 -1.4111 -3.8387 9 6 2.8183 0.6912 -4.6768 10 1 2.3513 1.6626 -4.5145 11 6 4.3496 0.8361 -4.7705 12 7 4.6670 0.3545 -6.1232 13 6 3.5344 -0.0138 -6.7361 14 8 3.5065 -0.4516 -7.8701 15 7 2.4354 0.1438 -5.9869 16 6 3.3211 -1.5161 -0.7028 17 6 3.4298 -1.1267 0.7871 18 7 2.0478 -0.7456 1.1764 19 6 2.0536 0.1023 2.3759 20 6 2.3470 -0.7439 3.5879 21 8 2.5326 -1.9363 3.4645 22 7 2.4023 -0.1762 4.8089 23 6 2.6698 -0.9460 5.9114 24 1 2.8317 -2.0082 5.8019 25 6 2.7325 -0.3597 7.1696 26 7 2.5359 0.9328 7.3027 27 14 3.0963 -1.4087 8.6718 28 1 4.5633 -1.4604 8.8960 29 1 2.4342 -0.8160 9.8615 30 1 2.5804 -2.7838 8.4520 31 1 -0.3633 0.4999 0.8979 32 1 -0.3632 0.5277 -0.8818 33 1 -0.3633 -1.0276 -0.0160 34 1 2.6708 1.0709 -2.0808 35 1 4.6428 1.8798 -4.6573 36 1 4.8391 0.2184 -4.0174 37 1 5.5553 0.3112 -6.5103 38 1 1.5306 -0.0688 -6.2645 39 1 3.1913 -2.5938 -0.8036 40 1 4.2073 -1.1897 -1.2470 41 1 4.1065 -0.2811 0.9105 42 1 3.7706 -1.9767 1.3783 43 1 1.0785 0.5759 2.4909 44 1 2.8207 0.8700 2.2745 45 1 2.2572 0.7779 4.9071 46 1 2.5793 1.3421 8.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689314830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:57 Heat of formation + Delta-G solvation = -106.749787 kcal Electronic energy + Delta-G solvation = -29405.492714 eV Core-core repulsion = 25136.246661 eV Total energy + Delta-G solvation = -4269.246053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.36001 -41.08539 -40.14235 -39.12881 -37.34852 -36.00457 -35.42763 -33.99172 -33.28233 -32.42798 -32.21688 -30.14651 -28.03640 -26.44495 -25.84696 -24.69460 -22.83844 -22.58598 -21.53099 -21.39570 -20.77331 -19.84248 -19.08886 -18.57226 -17.83679 -17.50589 -17.25261 -16.64711 -16.51615 -16.43269 -16.25660 -15.84628 -15.75003 -15.55769 -15.17721 -15.06692 -14.92365 -14.56184 -14.42384 -13.99528 -13.82181 -13.67337 -13.43982 -13.27543 -12.94362 -12.84533 -12.74132 -12.43289 -12.36056 -12.34819 -12.12237 -12.04256 -11.67593 -11.57516 -11.46332 -11.33429 -10.55888 -10.31730 -10.12079 -9.97508 -9.82515 -9.33353 -8.44651 -5.92419 1.38446 1.40754 1.42500 1.54498 1.66800 1.95431 2.10128 2.16358 2.30784 2.85205 3.08425 3.22405 3.31559 3.38883 3.45120 3.62352 3.80522 4.03170 4.07817 4.19665 4.27503 4.35324 4.39553 4.45350 4.46690 4.57942 4.67748 4.72394 4.75028 4.86151 4.91816 5.04595 5.06675 5.16427 5.39576 5.41446 5.43700 5.87749 5.91304 5.99415 6.12912 6.20767 6.29419 6.53642 6.64382 7.16634 7.19756 7.51911 7.60854 8.17803 8.72643 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001872 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.895194 B =14950.144962 C =15099.395544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 H 0.091 0.909 4 C 0.156 3.844 5 H 0.080 0.920 6 N -0.695 5.695 7 C 0.503 3.497 8 O -0.572 6.572 9 C 0.108 3.892 10 H 0.168 0.832 11 C 0.102 3.898 12 N -0.731 5.731 13 C 0.693 3.307 14 O -0.641 6.641 15 N -0.715 5.715 16 C -0.123 4.123 17 C 0.041 3.959 18 N -0.508 5.508 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.619 6.619 22 N -0.576 5.576 23 C -0.330 4.330 24 H 0.075 0.925 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.989 3.011 28 H -0.271 1.271 29 H -0.271 1.271 30 H -0.276 1.276 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.423 0.577 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.439 0.561 38 H 0.434 0.566 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 11.829 -21.059 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.108 0.892 4 C 0.050 3.950 5 H 0.098 0.902 6 N -0.349 5.349 7 C 0.288 3.712 8 O -0.450 6.450 9 C -0.001 4.001 10 H 0.185 0.815 11 C -0.022 4.022 12 N -0.394 5.394 13 C 0.391 3.609 14 O -0.523 6.523 15 N -0.376 5.376 16 C -0.163 4.163 17 C -0.087 4.087 18 N -0.233 5.233 19 C -0.081 4.081 20 C 0.228 3.772 21 O -0.504 6.504 22 N -0.214 5.214 23 C -0.460 4.460 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.201 1.201 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.261 0.739 35 H 0.162 0.838 36 H 0.110 0.890 37 H 0.283 0.717 38 H 0.276 0.724 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.477 9.686 -21.549 23.672 hybrid contribution 0.563 0.341 0.996 1.194 sum 2.040 10.027 -20.553 22.959 Atomic orbital electron populations 1.21735 0.92839 1.02062 1.02692 1.22917 0.96930 0.96813 0.88213 0.89175 1.21446 0.95984 0.91323 0.86287 0.90194 1.45838 1.68835 1.15555 1.04662 1.21332 0.76833 0.88661 0.84382 1.90793 1.49089 1.21414 1.83725 1.22199 0.97886 0.98187 0.81838 0.81506 1.22629 0.90627 1.04598 0.84388 1.45071 1.08400 1.69305 1.16609 1.16222 0.82722 0.78065 0.83863 1.90963 1.86715 1.54736 1.19927 1.44877 1.09040 1.69568 1.14085 1.22640 0.98804 1.00594 0.94228 1.23027 0.89638 1.00445 0.95617 1.64989 1.19409 1.37090 1.01788 1.21903 1.03816 0.93677 0.88681 1.20869 0.82343 0.88881 0.85067 1.90501 1.55741 1.17768 1.86425 1.41916 1.63153 1.10871 1.05414 1.19605 1.46992 0.93377 0.86033 0.90649 1.25960 0.96808 0.97286 1.01132 1.69657 1.49847 1.10580 1.25942 0.84986 0.78564 0.77905 0.77240 1.19673 1.19556 1.20109 0.92215 0.89791 0.93660 0.73852 0.83837 0.89012 0.71736 0.72366 0.92529 0.89032 0.92426 0.92860 0.87136 0.90273 0.76953 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.34 71.98 0.67 -1.71 16 2 C 0.06 1.06 2.58 45.06 0.12 1.18 16 3 H 0.09 1.02 7.61 -2.38 -0.02 1.01 16 4 C 0.16 2.74 2.96 45.88 0.14 2.88 16 5 H 0.08 1.87 7.26 -2.39 -0.02 1.85 16 6 N -0.70 -6.10 5.03 -438.28 -2.20 -8.31 16 7 C 0.50 6.47 6.95 87.66 0.61 7.08 16 8 O -0.57 -14.34 16.21 -3.06 -0.05 -14.39 16 9 C 0.11 0.61 4.17 44.51 0.19 0.80 16 10 H 0.17 -0.59 8.14 -2.39 -0.02 -0.61 16 11 C 0.10 0.28 7.70 86.65 0.67 0.94 16 12 N -0.73 -7.82 6.37 -477.34 -3.04 -10.86 16 13 C 0.69 13.81 8.92 179.57 1.60 15.41 16 14 O -0.64 -19.71 18.05 -3.99 -0.07 -19.78 16 15 N -0.72 -10.05 5.60 -460.35 -2.58 -12.63 16 16 C -0.12 -2.66 6.79 31.49 0.21 -2.45 16 17 C 0.04 1.12 5.92 86.45 0.51 1.63 16 18 N -0.51 -14.47 4.66 -861.15 -4.01 -18.48 16 19 C 0.05 1.55 5.26 85.56 0.45 2.00 16 20 C 0.44 20.13 7.63 87.66 0.67 20.80 16 21 O -0.62 -33.75 14.80 -3.08 -0.05 -33.79 16 22 N -0.58 -28.49 5.29 -306.97 -1.62 -30.11 16 23 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 24 H 0.08 4.54 7.16 -2.91 -0.02 4.52 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 26 N -0.92 -48.29 13.05 21.66 0.28 -48.01 16 27 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 30 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 31 H 0.06 1.08 7.30 -2.38 -0.02 1.06 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 1.00 8.12 -2.38 -0.02 0.98 16 34 H 0.42 0.19 8.38 -92.71 -0.78 -0.59 16 35 H 0.14 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.09 0.25 7.72 -2.38 -0.02 0.24 16 37 H 0.44 3.46 8.96 -92.71 -0.83 2.63 16 38 H 0.43 6.05 8.96 -92.71 -0.83 5.22 16 39 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.09 1.55 7.95 -2.39 -0.02 1.53 16 41 H 0.06 1.35 7.75 -2.39 -0.02 1.33 16 42 H 0.05 1.94 7.24 -2.38 -0.02 1.93 16 43 H 0.11 2.94 7.17 -2.39 -0.02 2.93 16 44 H 0.08 2.00 7.77 -2.39 -0.02 1.98 16 45 H 0.40 18.38 7.90 -92.71 -0.73 17.65 16 46 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -88.88 381.47 -6.31 -95.18 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -2.10 Total: 25.99 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 7.11 Total: 30.76 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -13.18 Total: -128.39 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -0.17 Total: -67.96 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -88.88 -6.31 -95.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689314830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.568 kcal (2) G-P(sol) polarization free energy of solvation -88.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds