Wall clock time and date at job start Tue Mar 31 2020 22:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.46055 * 2 1 4 4 C 1.54375 * 110.40971 * 237.58521 * 2 1 3 5 5 H 1.09005 * 110.32834 * 336.26374 * 4 2 1 6 6 N 1.46503 * 110.32421 * 98.37453 * 4 2 1 7 7 C 1.34785 * 119.99928 * 204.99747 * 6 4 2 8 8 O 1.21277 * 119.99696 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99712 * 179.97438 * 7 6 4 10 10 H 1.09002 * 110.48787 * 42.71191 * 9 7 6 11 11 C 1.54096 * 110.55363 * 280.00246 * 9 7 6 12 12 N 1.47054 * 103.86292 * 241.40807 * 11 9 7 13 13 C 1.33942 * 109.18019 * 359.97438 * 12 11 9 14 14 O 1.21596 * 123.04320 * 179.97438 * 13 12 11 15 15 N 1.33947 * 113.91815 * 0.02562 * 13 12 11 16 16 C 1.54267 * 105.06230 * 217.36891 * 4 2 1 17 17 C 1.54378 * 105.05416 * 0.02562 * 16 4 2 18 18 N 1.48558 * 104.59923 * 23.85424 * 17 16 4 19 19 C 1.46895 * 111.00108 * 200.96031 * 18 17 16 20 20 C 1.50706 * 109.47182 * 285.41530 * 19 18 17 21 21 O 1.21297 * 119.99667 * 0.02562 * 20 19 18 22 22 N 1.34769 * 120.00318 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00113 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00234 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00049 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00305 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00224 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46845 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47399 * 119.99902 * 27 25 23 30 30 H 1.48498 * 109.47295 * 240.00508 * 27 25 23 31 31 H 1.08994 * 109.47154 * 299.04323 * 1 2 3 32 32 H 1.09001 * 109.46946 * 59.03955 * 1 2 3 33 33 H 1.08999 * 109.47080 * 179.03538 * 1 2 3 34 34 H 0.97002 * 120.00305 * 24.99568 * 6 4 2 35 35 H 1.09000 * 110.54863 * 0.02562 * 11 9 7 36 36 H 1.09002 * 110.54818 * 122.81397 * 11 9 7 37 37 H 0.97002 * 125.40937 * 179.97438 * 12 11 9 38 38 H 0.97003 * 125.41127 * 180.02562 * 15 13 12 39 39 H 1.08991 * 110.32160 * 118.89660 * 16 4 2 40 40 H 1.08997 * 110.32428 * 241.00679 * 16 4 2 41 41 H 1.09001 * 110.41466 * 265.07213 * 17 16 4 42 42 H 1.09005 * 110.40748 * 142.63538 * 17 16 4 43 43 H 1.09001 * 109.47613 * 165.41876 * 19 18 17 44 44 H 1.09006 * 109.47521 * 45.41494 * 19 18 17 45 45 H 0.97005 * 119.99976 * 359.97438 * 22 20 19 46 46 H 0.97000 * 120.00002 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3235 -1.4881 -1.5759 6 7 2.4334 0.1536 -2.2937 7 6 2.4397 -0.2649 -3.5749 8 8 2.1428 -1.4105 -3.8401 9 6 2.8146 0.6911 -4.6779 10 1 3.6771 1.2904 -4.3865 11 6 1.6216 1.5982 -5.0363 12 7 1.3494 1.2816 -6.4463 13 6 2.2192 0.3530 -6.8647 14 8 2.2195 -0.0935 -7.9957 15 7 3.0882 -0.0401 -5.9242 16 6 3.3178 -1.5189 -0.7054 17 6 3.4287 -1.1304 0.7846 18 7 2.0476 -0.7472 1.1754 19 6 2.0560 0.1001 2.3754 20 6 2.3493 -0.7473 3.5866 21 8 2.5337 -1.9397 3.4623 22 7 2.4067 -0.1803 4.8079 23 6 2.6740 -0.9511 5.9096 24 1 2.8381 -2.0128 5.7990 25 6 2.7337 -0.3664 7.1687 26 7 2.5334 0.9253 7.3035 27 14 3.0972 -1.4168 8.6701 28 1 3.2820 -2.8299 8.2525 29 1 4.3365 -0.9292 9.3271 30 1 1.9627 -1.3264 9.6240 31 1 -0.3633 0.4989 0.8984 32 1 -0.3633 0.5287 -0.8813 33 1 -0.3633 -1.0275 -0.0173 34 1 2.6705 1.0700 -2.0816 35 1 0.7581 1.3576 -4.4162 36 1 1.8925 2.6482 -4.9253 37 1 0.6508 1.6818 -6.9874 38 1 3.7872 -0.7015 -6.0460 39 1 3.1861 -2.5961 -0.8066 40 1 4.2039 -1.1936 -1.2504 41 1 4.1068 -0.2859 0.9078 42 1 3.7686 -1.9813 1.3750 43 1 1.0819 0.5751 2.4916 44 1 2.8243 0.8667 2.2736 45 1 2.2596 0.7733 4.9073 46 1 2.3443 1.4707 6.5240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689314831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:01 Heat of formation + Delta-G solvation = -70.188036 kcal Electronic energy + Delta-G solvation = -29422.003355 eV Core-core repulsion = 25154.342739 eV Total energy + Delta-G solvation = -4267.660616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79992 -40.23678 -39.02880 -37.83331 -36.60902 -34.84730 -34.18975 -33.49155 -31.66347 -31.41534 -30.96008 -29.53149 -26.51774 -25.61200 -24.24350 -24.00833 -22.24458 -21.72754 -20.75275 -20.58222 -19.55456 -18.47227 -18.03128 -17.93127 -17.00330 -16.70565 -16.26377 -16.05705 -15.54636 -15.40974 -15.09676 -14.79495 -14.58743 -14.38669 -14.29142 -14.05794 -13.80429 -13.61843 -13.53176 -13.42324 -12.94098 -12.71179 -12.37675 -12.02298 -11.83808 -11.56301 -11.43871 -11.20222 -11.12930 -10.90175 -10.83428 -10.73776 -10.59241 -10.25027 -9.89728 -9.88341 -9.56809 -9.45549 -9.38127 -8.67260 -8.17592 -8.05067 -6.78095 -3.91355 1.95695 2.23413 2.49092 2.83119 3.29077 3.32639 3.47009 3.51743 3.65087 3.79233 3.84916 4.07445 4.21949 4.26958 4.28877 4.53399 4.62942 4.81472 4.83538 4.97707 5.06002 5.08043 5.16102 5.21308 5.28411 5.45061 5.50573 5.61082 5.70086 5.73632 5.78024 5.94245 5.98420 6.13075 6.15274 6.26996 6.50134 6.64653 6.85398 6.92962 6.96248 7.04304 7.69577 7.78710 8.05801 8.16260 8.57395 8.77955 9.44850 9.85727 10.65489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038204 B = 0.001856 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.724474 B =15084.090402 C =15361.221410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.055 0.945 4 C 0.145 3.855 5 H 0.104 0.896 6 N -0.717 5.717 7 C 0.501 3.499 8 O -0.515 6.515 9 C 0.103 3.897 10 H 0.118 0.882 11 C 0.104 3.896 12 N -0.739 5.739 13 C 0.706 3.294 14 O -0.582 6.582 15 N -0.714 5.714 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.476 5.476 19 C 0.036 3.964 20 C 0.448 3.552 21 O -0.569 6.569 22 N -0.578 5.578 23 C -0.380 4.380 24 H 0.100 0.900 25 C -0.010 4.010 26 N -0.903 5.903 27 Si 1.095 2.905 28 H -0.284 1.284 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.433 0.567 38 H 0.435 0.565 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.374 0.626 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 8.680 -21.666 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 H 0.072 0.928 4 C 0.040 3.960 5 H 0.122 0.878 6 N -0.370 5.370 7 C 0.284 3.716 8 O -0.389 6.389 9 C -0.008 4.008 10 H 0.135 0.865 11 C -0.022 4.022 12 N -0.403 5.403 13 C 0.404 3.596 14 O -0.459 6.459 15 N -0.376 5.376 16 C -0.171 4.171 17 C -0.090 4.090 18 N -0.200 5.200 19 C -0.096 4.096 20 C 0.233 3.767 21 O -0.451 6.451 22 N -0.217 5.217 23 C -0.510 4.510 24 H 0.118 0.882 25 C -0.212 4.212 26 N -0.543 5.543 27 Si 0.922 3.078 28 H -0.209 1.209 29 H -0.211 1.211 30 H -0.210 1.210 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.275 0.725 38 H 0.278 0.722 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.207 0.793 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.731 6.343 -20.711 21.673 hybrid contribution 0.350 1.793 -1.588 2.421 sum -0.381 8.136 -22.299 23.740 Atomic orbital electron populations 1.21719 0.93095 1.03133 1.01451 1.22881 0.96850 0.95634 0.90376 0.92758 1.21825 0.97452 0.91141 0.85569 0.87806 1.46130 1.69818 1.15137 1.05893 1.20741 0.78169 0.89080 0.83594 1.90791 1.46296 1.18922 1.82911 1.21863 0.99977 0.92718 0.86253 0.86450 1.22258 0.96750 0.99346 0.83813 1.45047 1.37226 1.45045 1.12936 1.15862 0.79623 0.79736 0.84342 1.91022 1.74701 1.61478 1.18737 1.44826 1.37022 1.46221 1.09577 1.22738 0.97148 1.01691 0.95533 1.23165 0.89428 1.01454 0.94949 1.65108 1.18897 1.35436 1.00560 1.22070 1.01806 0.94512 0.91247 1.19588 0.84694 0.88788 0.83635 1.90530 1.53968 1.15253 1.85360 1.41939 1.63645 1.09879 1.06192 1.20598 1.48997 0.95190 0.86175 0.88230 1.26495 0.96078 0.97931 1.00737 1.70850 1.45522 1.05090 1.32804 0.83058 0.76981 0.74129 0.73669 1.20905 1.21054 1.21000 0.92123 0.92474 0.91317 0.76496 0.89379 0.88482 0.72457 0.72208 0.90101 0.91090 0.94286 0.88296 0.89301 0.93230 0.79279 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.34 37.16 0.35 -0.98 16 2 C 0.05 0.53 2.58 -66.06 -0.17 0.36 16 3 H 0.05 0.45 7.61 -51.93 -0.40 0.06 16 4 C 0.14 1.41 2.96 -66.55 -0.20 1.22 16 5 H 0.10 1.23 7.26 -51.93 -0.38 0.85 16 6 N -0.72 -4.48 5.03 -52.46 -0.26 -4.75 16 7 C 0.50 3.89 6.95 -10.98 -0.08 3.81 16 8 O -0.52 -6.59 16.21 5.56 0.09 -6.50 16 9 C 0.10 0.49 4.17 -68.21 -0.28 0.20 16 10 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 11 C 0.10 0.33 7.70 -3.17 -0.02 0.31 16 12 N -0.74 -4.55 6.37 -64.70 -0.41 -4.96 16 13 C 0.71 7.20 8.92 -88.40 -0.79 6.41 16 14 O -0.58 -8.62 18.05 5.28 0.10 -8.53 16 15 N -0.71 -5.58 5.60 -59.33 -0.33 -5.91 16 16 C -0.13 -1.49 6.79 -25.35 -0.17 -1.66 16 17 C 0.04 0.53 5.92 -2.18 -0.01 0.52 16 18 N -0.48 -7.05 4.66 -223.55 -1.04 -8.09 16 19 C 0.04 0.57 5.27 -4.98 -0.03 0.55 16 20 C 0.45 10.14 7.63 -10.99 -0.08 10.05 16 21 O -0.57 -15.06 14.80 5.54 0.08 -14.98 16 22 N -0.58 -14.06 5.28 -10.96 -0.06 -14.12 16 23 C -0.38 -10.47 9.68 -14.93 -0.14 -10.62 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 25 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 26 N -0.90 -24.79 13.68 55.50 0.76 -24.03 16 27 Si 1.10 24.02 29.92 -169.99 -5.09 18.93 16 28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 31 H 0.06 0.61 7.31 -51.93 -0.38 0.24 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.40 1.24 8.38 -40.82 -0.34 0.90 16 35 H 0.09 0.26 7.72 -51.93 -0.40 -0.14 16 36 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.43 1.94 8.96 -40.82 -0.37 1.57 16 38 H 0.44 3.23 8.96 -40.82 -0.37 2.87 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.70 7.95 -51.93 -0.41 0.28 16 41 H 0.04 0.51 7.75 -51.93 -0.40 0.10 16 42 H 0.10 1.73 7.24 -51.93 -0.38 1.35 16 43 H 0.09 1.28 7.18 -51.93 -0.37 0.91 16 44 H 0.05 0.71 7.77 -51.93 -0.40 0.30 16 45 H 0.37 8.36 6.73 -40.82 -0.27 8.08 16 46 H 0.26 6.84 6.78 -40.82 -0.28 6.57 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -39.03 379.77 -8.60 -47.63 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.43 Total: 9.79 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -1.73 Total: 9.80 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.35 Total: -61.87 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.27 Total: -30.01 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.03 -8.60 -47.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689314831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.556 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds