Wall clock time and date at job start Tue Mar 31 2020 22:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.46055 * 2 1 4 4 C 1.54375 * 110.40971 * 237.58521 * 2 1 3 5 5 H 1.09005 * 110.32834 * 336.26374 * 4 2 1 6 6 N 1.46503 * 110.32421 * 98.37453 * 4 2 1 7 7 C 1.34785 * 119.99928 * 204.99747 * 6 4 2 8 8 O 1.21277 * 119.99696 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99712 * 179.97438 * 7 6 4 10 10 H 1.09002 * 110.48787 * 42.71191 * 9 7 6 11 11 C 1.54096 * 110.55363 * 280.00246 * 9 7 6 12 12 N 1.47054 * 103.86292 * 241.40807 * 11 9 7 13 13 C 1.33942 * 109.18019 * 359.97438 * 12 11 9 14 14 O 1.21596 * 123.04320 * 179.97438 * 13 12 11 15 15 N 1.33947 * 113.91815 * 0.02562 * 13 12 11 16 16 C 1.54267 * 105.06230 * 217.36891 * 4 2 1 17 17 C 1.54378 * 105.05416 * 0.02562 * 16 4 2 18 18 N 1.48558 * 104.59923 * 23.85424 * 17 16 4 19 19 C 1.46895 * 111.00108 * 200.96031 * 18 17 16 20 20 C 1.50706 * 109.47182 * 285.41530 * 19 18 17 21 21 O 1.21297 * 119.99667 * 0.02562 * 20 19 18 22 22 N 1.34769 * 120.00318 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00113 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00234 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00049 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00305 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00224 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46845 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47399 * 119.99902 * 27 25 23 30 30 H 1.48498 * 109.47295 * 240.00508 * 27 25 23 31 31 H 1.08994 * 109.47154 * 299.04323 * 1 2 3 32 32 H 1.09001 * 109.46946 * 59.03955 * 1 2 3 33 33 H 1.08999 * 109.47080 * 179.03538 * 1 2 3 34 34 H 0.97002 * 120.00305 * 24.99568 * 6 4 2 35 35 H 1.09000 * 110.54863 * 0.02562 * 11 9 7 36 36 H 1.09002 * 110.54818 * 122.81397 * 11 9 7 37 37 H 0.97002 * 125.40937 * 179.97438 * 12 11 9 38 38 H 0.97003 * 125.41127 * 180.02562 * 15 13 12 39 39 H 1.08991 * 110.32160 * 118.89660 * 16 4 2 40 40 H 1.08997 * 110.32428 * 241.00679 * 16 4 2 41 41 H 1.09001 * 110.41466 * 265.07213 * 17 16 4 42 42 H 1.09005 * 110.40748 * 142.63538 * 17 16 4 43 43 H 1.09001 * 109.47613 * 165.41876 * 19 18 17 44 44 H 1.09006 * 109.47521 * 45.41494 * 19 18 17 45 45 H 0.97005 * 119.99976 * 359.97438 * 22 20 19 46 46 H 0.97000 * 120.00002 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3235 -1.4881 -1.5759 6 7 2.4334 0.1536 -2.2937 7 6 2.4397 -0.2649 -3.5749 8 8 2.1428 -1.4105 -3.8401 9 6 2.8146 0.6911 -4.6779 10 1 3.6771 1.2904 -4.3865 11 6 1.6216 1.5982 -5.0363 12 7 1.3494 1.2816 -6.4463 13 6 2.2192 0.3530 -6.8647 14 8 2.2195 -0.0935 -7.9957 15 7 3.0882 -0.0401 -5.9242 16 6 3.3178 -1.5189 -0.7054 17 6 3.4287 -1.1304 0.7846 18 7 2.0476 -0.7472 1.1754 19 6 2.0560 0.1001 2.3754 20 6 2.3493 -0.7473 3.5866 21 8 2.5337 -1.9397 3.4623 22 7 2.4067 -0.1803 4.8079 23 6 2.6740 -0.9511 5.9096 24 1 2.8381 -2.0128 5.7990 25 6 2.7337 -0.3664 7.1687 26 7 2.5334 0.9253 7.3035 27 14 3.0972 -1.4168 8.6701 28 1 3.2820 -2.8299 8.2525 29 1 4.3365 -0.9292 9.3271 30 1 1.9627 -1.3264 9.6240 31 1 -0.3633 0.4989 0.8984 32 1 -0.3633 0.5287 -0.8813 33 1 -0.3633 -1.0275 -0.0173 34 1 2.6705 1.0700 -2.0816 35 1 0.7581 1.3576 -4.4162 36 1 1.8925 2.6482 -4.9253 37 1 0.6508 1.6818 -6.9874 38 1 3.7872 -0.7015 -6.0460 39 1 3.1861 -2.5961 -0.8066 40 1 4.2039 -1.1936 -1.2504 41 1 4.1068 -0.2859 0.9078 42 1 3.7686 -1.9813 1.3750 43 1 1.0819 0.5751 2.4916 44 1 2.8243 0.8667 2.2736 45 1 2.2596 0.7733 4.9073 46 1 2.3443 1.4707 6.5240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689314831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:00 Heat of formation + Delta-G solvation = -107.101279 kcal Electronic energy + Delta-G solvation = -29423.604033 eV Core-core repulsion = 25154.342739 eV Total energy + Delta-G solvation = -4269.261294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37634 -41.15122 -40.25187 -39.23653 -37.36401 -36.37546 -35.50447 -34.00314 -33.20475 -32.45477 -32.24506 -30.15898 -27.91546 -26.46257 -25.80620 -24.73476 -22.83614 -22.65603 -21.68141 -21.55137 -20.97562 -19.93047 -19.12949 -18.57433 -18.14690 -17.52928 -17.30686 -16.94042 -16.61620 -16.43542 -16.14093 -15.96053 -15.68061 -15.48146 -15.31173 -15.07915 -14.96355 -14.72100 -14.60333 -13.96712 -13.90531 -13.67463 -13.32584 -13.28231 -12.94539 -12.84677 -12.76554 -12.45356 -12.39564 -12.10919 -11.96722 -11.86031 -11.72298 -11.59014 -11.48761 -11.35531 -10.56943 -10.39183 -10.16026 -10.07064 -9.83683 -9.40949 -8.90477 -6.04056 1.38489 1.53626 1.54440 1.64530 1.81615 1.93575 2.04854 2.14394 2.40831 2.75686 3.06469 3.17670 3.25810 3.31438 3.38595 3.59525 3.73120 4.01104 4.01913 4.11733 4.17019 4.28150 4.32654 4.36474 4.40895 4.45310 4.66553 4.68977 4.73079 4.81376 4.87156 5.00170 5.01713 5.10693 5.35829 5.37536 5.62024 5.85442 5.89634 5.97818 6.01825 6.19553 6.28220 6.50859 6.61294 6.79075 7.16970 7.47836 7.50692 7.98596 8.57853 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.038204 B = 0.001856 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.724474 B =15084.090402 C =15361.221410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 H 0.092 0.908 4 C 0.156 3.844 5 H 0.080 0.920 6 N -0.695 5.695 7 C 0.503 3.497 8 O -0.572 6.572 9 C 0.107 3.893 10 H 0.165 0.835 11 C 0.104 3.896 12 N -0.730 5.730 13 C 0.693 3.307 14 O -0.642 6.642 15 N -0.716 5.716 16 C -0.124 4.124 17 C 0.040 3.960 18 N -0.508 5.508 19 C 0.051 3.949 20 C 0.445 3.555 21 O -0.613 6.613 22 N -0.589 5.589 23 C -0.407 4.407 24 H 0.069 0.931 25 C -0.042 4.042 26 N -0.918 5.918 27 Si 1.135 2.865 28 H -0.283 1.283 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.423 0.577 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.440 0.560 38 H 0.433 0.567 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.385 0.615 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 12.070 -22.017 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.109 0.891 4 C 0.050 3.950 5 H 0.099 0.901 6 N -0.349 5.349 7 C 0.288 3.712 8 O -0.450 6.450 9 C -0.002 4.002 10 H 0.182 0.818 11 C -0.021 4.021 12 N -0.393 5.393 13 C 0.391 3.609 14 O -0.524 6.524 15 N -0.377 5.377 16 C -0.163 4.163 17 C -0.088 4.088 18 N -0.233 5.233 19 C -0.081 4.081 20 C 0.232 3.768 21 O -0.498 6.498 22 N -0.229 5.229 23 C -0.536 4.536 24 H 0.087 0.913 25 C -0.240 4.240 26 N -0.558 5.558 27 Si 0.956 3.044 28 H -0.208 1.208 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.113 0.887 36 H 0.162 0.838 37 H 0.283 0.717 38 H 0.275 0.725 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.219 0.781 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.708 9.841 -21.031 23.230 hybrid contribution 0.315 0.698 -1.516 1.699 sum -0.393 10.539 -22.547 24.892 Atomic orbital electron populations 1.21741 0.92672 1.02088 1.02815 1.22930 0.97025 0.96803 0.88089 0.89050 1.21444 0.95925 0.91335 0.86309 0.90134 1.45837 1.68905 1.15571 1.04608 1.21335 0.76777 0.88733 0.84335 1.90791 1.48814 1.21631 1.83731 1.22205 1.02479 0.91865 0.83681 0.81771 1.22638 0.96375 1.01380 0.81687 1.45066 1.36230 1.43676 1.14354 1.16227 0.80419 0.80281 0.83957 1.90966 1.76382 1.63653 1.21360 1.44897 1.36282 1.46164 1.10348 1.22642 0.98889 1.00689 0.94095 1.23027 0.89619 1.00367 0.95746 1.64987 1.19468 1.37015 1.01826 1.21912 1.03896 0.93641 0.88631 1.20872 0.82093 0.88946 0.84858 1.90511 1.55204 1.17810 1.86290 1.41981 1.64454 1.10193 1.06264 1.20514 1.50711 0.94420 0.87984 0.91291 1.27710 0.95105 0.98375 1.02823 1.70911 1.46379 1.05448 1.33017 0.82574 0.77697 0.72893 0.71243 1.20828 1.19646 1.19739 0.92231 0.89502 0.93725 0.73848 0.88663 0.83805 0.71673 0.72456 0.92408 0.89121 0.92544 0.92960 0.86926 0.90207 0.78101 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.34 71.98 0.67 -1.59 16 2 C 0.06 1.03 2.58 45.06 0.12 1.14 16 3 H 0.09 0.97 7.61 -2.39 -0.02 0.95 16 4 C 0.16 2.70 2.96 45.89 0.14 2.84 16 5 H 0.08 1.85 7.26 -2.38 -0.02 1.84 16 6 N -0.70 -5.89 5.03 -438.28 -2.20 -8.09 16 7 C 0.50 6.35 6.95 87.66 0.61 6.96 16 8 O -0.57 -14.21 16.21 -3.02 -0.05 -14.25 16 9 C 0.11 0.59 4.17 44.51 0.19 0.77 16 10 H 0.17 -0.53 8.14 -2.39 -0.02 -0.55 16 11 C 0.10 0.18 7.70 86.64 0.67 0.85 16 12 N -0.73 -7.24 6.37 -477.35 -3.04 -10.28 16 13 C 0.69 13.57 8.92 179.57 1.60 15.17 16 14 O -0.64 -19.56 18.05 -4.02 -0.07 -19.64 16 15 N -0.72 -10.08 5.60 -460.34 -2.58 -12.66 16 16 C -0.12 -2.68 6.79 31.49 0.21 -2.47 16 17 C 0.04 1.11 5.92 86.45 0.51 1.62 16 18 N -0.51 -14.32 4.66 -861.17 -4.01 -18.34 16 19 C 0.05 1.53 5.27 85.56 0.45 1.98 16 20 C 0.44 20.25 7.63 87.66 0.67 20.92 16 21 O -0.61 -33.70 14.80 -3.08 -0.05 -33.74 16 22 N -0.59 -28.88 5.28 -306.99 -1.62 -30.50 16 23 C -0.41 -22.92 9.68 84.04 0.81 -22.11 16 24 H 0.07 4.24 7.16 -2.91 -0.02 4.22 16 25 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 26 N -0.92 -49.92 13.68 21.66 0.30 -49.63 16 27 Si 1.14 48.24 29.92 68.60 2.05 50.29 16 28 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 29 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 30 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 31 H 0.06 1.02 7.31 -2.39 -0.02 1.00 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 34 H 0.42 0.05 8.38 -92.71 -0.78 -0.73 16 35 H 0.10 0.11 7.72 -2.39 -0.02 0.09 16 36 H 0.14 -0.95 8.14 -2.39 -0.02 -0.96 16 37 H 0.44 3.05 8.96 -92.71 -0.83 2.22 16 38 H 0.43 6.21 8.96 -92.71 -0.83 5.37 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.58 7.95 -2.39 -0.02 1.56 16 41 H 0.06 1.33 7.75 -2.39 -0.02 1.32 16 42 H 0.05 1.92 7.24 -2.38 -0.02 1.90 16 43 H 0.11 2.89 7.18 -2.39 -0.02 2.87 16 44 H 0.08 1.96 7.77 -2.38 -0.02 1.94 16 45 H 0.38 17.01 6.73 -92.70 -0.62 16.39 16 46 H 0.26 13.57 6.78 -92.71 -0.63 12.94 16 Total: -1.00 -92.40 379.77 -6.02 -98.41 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -1.85 Total: 24.11 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 7.11 Total: 24.32 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -13.16 Total: -129.50 kcal Atomic # 8 Polarization: -67.47 SS G_CDS: -0.17 Total: -67.63 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.05 Total: 50.29 kcal Total: -92.40 -6.02 -98.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689314831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.689 kcal (2) G-P(sol) polarization free energy of solvation -92.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds