Wall clock time and date at job start Tue Mar 31 2020 22:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47245 * 2 1 4 4 N 1.46500 * 109.47570 * 120.00310 * 2 1 3 5 5 C 1.36933 * 119.99975 * 281.91678 * 4 2 1 6 6 H 1.08003 * 120.00028 * 2.25560 * 5 4 2 7 7 C 1.38813 * 119.99973 * 182.26974 * 5 4 2 8 8 N 1.31617 * 119.99882 * 183.90115 * 7 5 4 9 9 Si 1.86794 * 119.99788 * 3.88966 * 7 5 4 10 10 H 1.48499 * 109.47015 * 94.33855 * 9 7 5 11 11 H 1.48504 * 109.47072 * 214.33340 * 9 7 5 12 12 H 1.48498 * 109.47597 * 334.33545 * 9 7 5 13 13 C 1.53008 * 109.46883 * 240.00412 * 2 1 3 14 14 H 1.08992 * 109.69801 * 286.22200 * 13 2 1 15 15 C 1.53622 * 109.66102 * 46.81074 * 13 2 1 16 16 C 1.53044 * 109.23644 * 174.54939 * 15 13 2 17 17 C 1.53042 * 109.54279 * 298.50939 * 16 15 13 18 18 C 1.53191 * 109.30609 * 61.36476 * 17 16 15 19 19 N 1.46919 * 109.58376 * 165.86505 * 13 2 1 20 20 C 1.34771 * 120.63776 * 6.62505 * 19 13 2 21 21 O 1.21283 * 119.99874 * 5.08413 * 20 19 13 22 22 C 1.50704 * 120.00376 * 185.08529 * 20 19 13 23 23 N 1.46506 * 109.46961 * 185.50396 * 22 20 19 24 24 C 1.36368 * 125.96139 * 266.73252 * 23 22 20 25 25 O 1.35636 * 125.98820 * 0.03699 * 24 23 22 26 26 N 1.30902 * 108.02522 * 179.89075 * 24 23 22 27 27 N 1.40114 * 107.93515 * 0.36573 * 26 24 23 28 28 C 1.30907 * 107.94302 * 359.77048 * 27 26 24 29 29 O 1.35622 * 125.98671 * 180.02562 * 28 27 26 30 30 H 1.09009 * 109.46812 * 304.64222 * 1 2 3 31 31 H 1.08993 * 109.47279 * 64.63970 * 1 2 3 32 32 H 1.08998 * 109.47303 * 184.64629 * 1 2 3 33 33 H 0.96998 * 119.99889 * 101.90373 * 4 2 1 34 34 H 0.97004 * 119.99566 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.63967 * 54.56269 * 15 13 2 36 36 H 1.08998 * 109.45933 * 294.43142 * 15 13 2 37 37 H 1.09006 * 109.46114 * 178.49009 * 16 15 13 38 38 H 1.09003 * 109.46018 * 58.53846 * 16 15 13 39 39 H 1.09000 * 109.49307 * 301.42204 * 17 16 15 40 40 H 1.08995 * 109.49934 * 181.31529 * 17 16 15 41 41 H 1.09002 * 109.58698 * 185.57941 * 18 17 16 42 42 H 1.09003 * 109.70385 * 65.22724 * 18 17 16 43 43 H 1.08995 * 109.47072 * 65.50229 * 22 20 19 44 44 H 1.08996 * 109.46710 * 305.49905 * 22 20 19 45 45 H 0.96700 * 113.99886 * 89.99906 * 25 24 23 46 46 H 0.96702 * 114.00152 * 269.96981 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.0158 -0.0494 2.4060 6 1 1.6200 0.9523 2.4854 7 6 2.5222 -0.6868 3.5304 8 7 2.4500 -0.1016 4.7071 9 14 3.3058 -2.3751 3.3734 10 1 4.7748 -2.2262 3.2150 11 1 3.0177 -3.1700 4.5943 12 1 2.7480 -3.0714 2.1864 13 6 2.0400 -0.7212 -1.2494 14 1 1.8921 -1.7955 -1.1395 15 6 1.2787 -0.2163 -2.4845 16 6 1.8870 -0.8415 -3.7421 17 6 3.3506 -0.4129 -3.8703 18 6 4.1338 -0.9151 -2.6533 19 7 3.4696 -0.4369 -1.4330 20 6 4.1600 0.2446 -0.4975 21 8 3.6263 0.5494 0.5480 22 6 5.5953 0.6282 -0.7506 23 7 6.1576 1.2390 0.4565 24 6 6.1931 2.5731 0.7369 25 8 5.7135 3.5664 -0.0524 26 7 6.7683 2.7268 1.9027 27 7 7.1196 1.4577 2.3812 28 6 6.7422 0.5731 1.4931 29 8 6.9036 -0.7701 1.5878 30 1 -0.3633 0.5842 0.8456 31 1 -0.3633 0.4401 -0.9286 32 1 -0.3634 -1.0243 0.0832 33 1 2.3435 -1.6022 1.1310 34 1 2.8035 -0.5472 5.4929 35 1 1.3561 0.8693 -2.5441 36 1 0.2299 -0.5026 -2.4068 37 1 1.3325 -0.5066 -4.6188 38 1 1.8316 -1.9278 -3.6708 39 1 3.4084 0.6746 -3.9166 40 1 3.7764 -0.8395 -4.7784 41 1 5.1526 -0.5293 -2.6898 42 1 4.1556 -2.0049 -2.6544 43 1 5.6412 1.3411 -1.5737 44 1 6.1691 -0.2620 -1.0084 45 1 4.7885 3.7916 0.1171 46 1 7.7353 -1.0936 1.2152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689912570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:00 Heat of formation + Delta-G solvation = 8.888452 kcal Electronic energy + Delta-G solvation = -32755.307487 eV Core-core repulsion = 28491.075885 eV Total energy + Delta-G solvation = -4264.231602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.33500 -41.49725 -39.17772 -38.36938 -38.07284 -37.18216 -35.22370 -34.20195 -33.71631 -31.97837 -30.67706 -29.75183 -29.12366 -26.17021 -25.65872 -24.03356 -23.85873 -23.16856 -22.01271 -21.54957 -20.61875 -19.86778 -19.65883 -19.18277 -18.12596 -17.74716 -17.24778 -16.90462 -16.53345 -16.37517 -16.07472 -15.81126 -15.27194 -15.14510 -14.75275 -14.69499 -14.40111 -14.27137 -14.11625 -13.93856 -13.83195 -13.79346 -13.38820 -13.27061 -13.09480 -12.85394 -12.63144 -12.50095 -12.32312 -12.06053 -11.87708 -11.71734 -11.67342 -11.58601 -11.46441 -11.42067 -11.14441 -10.83183 -10.52349 -9.90818 -9.45833 -8.89721 -7.87951 -5.10063 0.38603 0.83457 1.18020 1.24813 1.38932 1.42688 1.78460 2.04188 2.22456 2.56514 2.87073 3.42704 3.46708 3.49056 3.66390 3.88277 3.95906 4.03477 4.12688 4.19670 4.27713 4.28521 4.34575 4.35642 4.63227 4.69920 4.71103 4.75942 4.81752 4.92128 5.01623 5.09230 5.15949 5.21995 5.27183 5.30938 5.40177 5.46083 5.56665 5.83871 5.89077 6.17286 6.33309 6.41666 6.56132 6.82008 7.24120 7.45112 8.02955 8.19609 9.36632 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008651 B = 0.007054 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.831105 B = 3968.701185 C = 5780.143194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.042 0.958 4 N -0.718 5.718 5 C -0.144 4.144 6 H 0.036 0.964 7 C -0.085 4.085 8 N -1.002 6.002 9 Si 0.952 3.048 10 H -0.290 1.290 11 H -0.309 1.309 12 H -0.256 1.256 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.099 3.901 19 N -0.606 5.606 20 C 0.451 3.549 21 O -0.488 6.488 22 C 0.084 3.916 23 N -0.487 5.487 24 C 0.424 3.576 25 O -0.429 6.429 26 N -0.341 5.341 27 N -0.348 5.348 28 C 0.427 3.573 29 O -0.439 6.439 30 H 0.020 0.980 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.353 0.647 34 H 0.244 0.756 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.429 0.571 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -3.080 -29.241 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.077 3.923 3 H 0.060 0.940 4 N -0.360 5.360 5 C -0.276 4.276 6 H 0.054 0.946 7 C -0.274 4.274 8 N -0.657 5.657 9 Si 0.783 3.217 10 H -0.217 1.217 11 H -0.237 1.237 12 H -0.181 1.181 13 C 0.046 3.954 14 H 0.081 0.919 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.022 4.022 19 N -0.343 5.343 20 C 0.235 3.765 21 O -0.359 6.359 22 C -0.041 4.041 23 N -0.207 5.207 24 C 0.113 3.887 25 O -0.232 6.232 26 N -0.185 5.185 27 N -0.192 5.192 28 C 0.116 3.884 29 O -0.242 6.242 30 H 0.040 0.960 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.186 0.814 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.178 0.822 44 H 0.168 0.832 45 H 0.290 0.710 46 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 6.159 -2.089 -27.254 28.019 hybrid contribution -0.350 -1.537 -0.018 1.577 sum 5.809 -3.627 -27.271 28.118 Atomic orbital electron populations 1.22466 0.98112 1.00951 1.00683 1.20468 0.91303 0.95948 0.84626 0.93976 1.42620 1.76279 1.12699 1.04409 1.18536 1.27179 0.96644 0.85273 0.94594 1.25252 1.04563 1.02238 0.95303 1.69894 1.56137 1.40679 0.98956 0.85408 0.78834 0.81349 0.76078 1.21697 1.23727 1.18106 1.21521 0.80276 0.98619 0.95024 0.91949 1.22050 0.99706 1.00943 0.93189 1.21531 0.96319 1.00753 0.96844 1.21902 0.95185 1.01832 0.97708 1.22084 0.97304 1.00154 0.82699 1.48032 1.09421 1.56031 1.20843 1.21299 0.89296 0.81338 0.84588 1.91385 1.68384 1.51518 1.24608 1.22168 0.92889 1.03328 0.85755 1.46532 1.48658 1.06310 1.19171 1.21213 0.98109 0.79644 0.89722 1.84804 1.35435 1.46598 1.56360 1.78139 1.21254 1.12988 1.06093 1.78168 1.25189 0.94627 1.21226 1.21190 0.95832 0.86024 0.85350 1.85101 1.46608 1.10578 1.81961 0.96036 0.90016 0.93367 0.81378 0.94689 0.91690 0.89942 0.90205 0.91550 0.91361 0.88288 0.87598 0.90558 0.82227 0.83197 0.70972 0.70581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 8.82 71.98 0.63 -4.81 16 2 C 0.18 6.74 1.84 44.99 0.08 6.82 16 3 H 0.04 1.77 6.27 -2.38 -0.01 1.75 16 4 N -0.72 -34.36 3.19 -322.92 -1.03 -35.39 16 5 C -0.14 -8.79 8.68 84.03 0.73 -8.06 16 6 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 7 C -0.09 -5.56 5.50 84.86 0.47 -5.09 16 8 N -1.00 -71.72 13.97 21.65 0.30 -71.42 16 9 Si 0.95 51.72 27.96 68.60 1.92 53.64 16 10 H -0.29 -16.01 7.11 99.48 0.71 -15.30 16 11 H -0.31 -17.16 7.11 99.48 0.71 -16.45 16 12 H -0.26 -12.23 6.20 99.48 0.62 -11.62 16 13 C 0.15 3.72 2.67 45.12 0.12 3.84 16 14 H 0.06 1.63 8.07 -2.39 -0.02 1.62 16 15 C -0.12 -2.01 4.39 30.82 0.14 -1.87 16 16 C -0.12 -1.19 5.88 30.62 0.18 -1.01 16 17 C -0.13 -0.92 6.08 30.67 0.19 -0.73 16 18 C 0.10 0.99 6.32 86.36 0.55 1.53 16 19 N -0.61 -12.77 2.97 -794.22 -2.36 -15.13 16 20 C 0.45 12.54 7.49 87.66 0.66 13.20 16 21 O -0.49 -20.48 9.28 -3.04 -0.03 -20.51 16 22 C 0.08 1.59 4.93 85.63 0.42 2.01 16 23 N -0.49 -14.37 2.25 -759.28 -1.71 -16.08 16 24 C 0.42 13.91 9.15 179.72 1.64 15.55 16 25 O -0.43 -10.28 13.53 -89.49 -1.21 -11.49 16 26 N -0.34 -14.19 12.72 -173.66 -2.21 -16.40 16 27 N -0.35 -15.15 12.72 -173.67 -2.21 -17.36 16 28 C 0.43 15.32 9.15 179.72 1.65 16.97 16 29 O -0.44 -13.36 13.58 -89.34 -1.21 -14.57 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 2.06 6.15 -2.39 -0.01 2.04 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.35 16.89 5.41 -92.71 -0.50 16.38 16 34 H 0.24 17.03 8.31 -92.71 -0.77 16.26 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.33 6.62 -2.39 -0.02 1.32 16 37 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.11 0.45 5.91 -2.39 -0.01 0.44 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.16 1.75 8.03 -2.39 -0.02 1.73 16 44 H 0.15 1.65 7.42 -2.39 -0.02 1.63 16 45 H 0.43 7.75 9.06 -74.06 -0.67 7.08 16 46 H 0.43 6.10 9.06 -74.06 -0.67 5.43 16 Total: -1.00 -102.19 367.02 -3.17 -105.36 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.88 Total: 20.99 kcal Atomic # 6 Polarization: 30.90 SS G_CDS: 7.45 Total: 38.36 kcal Atomic # 7 Polarization: -162.56 SS G_CDS: -9.21 Total: -171.77 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.45 Total: -46.57 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.92 Total: 53.64 kcal Total: -102.19 -3.17 -105.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689912570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.247 kcal (2) G-P(sol) polarization free energy of solvation -102.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds