Wall clock time and date at job start Tue Mar 31 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46836 * 2 1 4 4 N 1.46501 * 109.47271 * 240.00663 * 2 1 3 5 5 C 1.36929 * 120.00675 * 76.54626 * 4 2 1 6 6 H 1.08006 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00534 * 180.02562 * 5 4 2 8 8 N 1.31628 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00342 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46955 * 119.99937 * 9 7 5 12 12 H 1.48496 * 109.47081 * 239.99622 * 9 7 5 13 13 C 1.52999 * 109.47144 * 119.99877 * 2 1 3 14 14 H 1.09002 * 109.58375 * 72.27860 * 13 2 1 15 15 C 1.53190 * 109.70436 * 311.91965 * 13 2 1 16 16 C 1.53038 * 109.31002 * 185.50423 * 15 13 2 17 17 C 1.53041 * 109.53780 * 61.36987 * 16 15 13 18 18 C 1.53627 * 109.24289 * 298.51157 * 17 16 15 19 19 N 1.46926 * 108.54424 * 54.85086 * 18 17 16 20 20 C 1.34770 * 120.62670 * 126.37447 * 19 18 17 21 21 O 1.21289 * 119.99952 * 174.87570 * 20 19 18 22 22 C 1.50701 * 120.00553 * 354.87497 * 20 19 18 23 23 N 1.46494 * 109.47313 * 180.02562 * 22 20 19 24 24 C 1.36376 * 125.96475 * 269.97373 * 23 22 20 25 25 O 1.35629 * 125.98246 * 0.04478 * 24 23 22 26 26 N 1.30899 * 108.02730 * 180.02562 * 24 23 22 27 27 N 1.40113 * 107.93878 * 359.97438 * 26 24 23 28 28 C 1.30906 * 107.93967 * 359.97438 * 27 26 24 29 29 O 1.35636 * 125.98708 * 179.97438 * 28 27 26 30 30 H 1.08997 * 109.47345 * 306.19611 * 1 2 3 31 31 H 1.09001 * 109.47309 * 66.20221 * 1 2 3 32 32 H 1.09003 * 109.46569 * 186.19543 * 1 2 3 33 33 H 0.97006 * 119.99546 * 256.55588 * 4 2 1 34 34 H 0.96996 * 120.00095 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.49936 * 305.45852 * 15 13 2 36 36 H 1.09005 * 109.49392 * 65.55816 * 15 13 2 37 37 H 1.09000 * 109.45636 * 181.38269 * 16 15 13 38 38 H 1.08995 * 109.46602 * 301.34538 * 16 15 13 39 39 H 1.09003 * 109.50007 * 58.58009 * 17 16 15 40 40 H 1.08994 * 109.50282 * 178.67705 * 17 16 15 41 41 H 1.09004 * 109.73104 * 295.11835 * 18 17 16 42 42 H 1.08991 * 109.66780 * 174.55147 * 18 17 16 43 43 H 1.08992 * 109.46638 * 59.99670 * 22 20 19 44 44 H 1.09002 * 109.46678 * 299.99882 * 22 20 19 45 45 H 0.96701 * 113.99864 * 269.99633 * 25 24 23 46 46 H 0.96703 * 113.99780 * 90.02193 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 1.9866 -0.0604 -2.4115 6 1 1.6018 0.9459 -2.4882 7 6 2.4488 -0.7148 -3.5450 8 7 2.9182 -1.9410 -3.4516 9 14 2.4060 0.1450 -5.2028 10 1 1.8384 1.5075 -5.0393 11 1 3.7853 0.2457 -5.7439 12 1 1.5611 -0.6343 -6.1430 13 6 2.0400 -0.7212 1.2492 14 1 1.8671 -1.7927 1.1487 15 6 1.3038 -0.1959 2.4857 16 6 1.9142 -0.8214 3.7419 17 6 3.3870 -0.4196 3.8498 18 6 4.1481 -0.9522 2.6262 19 7 3.4781 -0.4675 1.4118 20 6 4.1706 0.1924 0.4625 21 8 3.6283 0.5059 -0.5762 22 6 5.6188 0.5409 0.6913 23 7 6.1410 1.2509 -0.4788 24 6 6.7294 0.6770 -1.5671 25 8 6.9327 -0.6506 -1.7557 26 7 7.0633 1.6320 -2.3978 27 7 6.6786 2.8532 -1.8286 28 6 6.1229 2.6009 -0.6705 29 8 5.6191 3.5213 0.1891 30 1 -0.3634 0.6069 0.8293 31 1 -0.3634 0.4147 -0.9403 32 1 -0.3632 -1.0217 0.1109 33 1 2.3642 -1.5942 -1.1274 34 1 3.2416 -2.3982 -4.2436 35 1 1.4024 0.8884 2.5344 36 1 0.2490 -0.4633 2.4219 37 1 1.3761 -0.4682 4.6216 38 1 1.8375 -1.9070 3.6812 39 1 3.4660 0.6669 3.8857 40 1 3.8150 -0.8461 4.7570 41 1 4.1435 -2.0422 2.6358 42 1 5.1755 -0.5889 2.6465 43 1 6.1919 -0.3728 0.8481 44 1 5.7043 1.1789 1.5710 45 1 7.7805 -0.9705 -1.4182 46 1 4.6842 3.7229 0.0459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689912571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:06 Heat of formation + Delta-G solvation = 44.155578 kcal Electronic energy + Delta-G solvation = -32642.260243 eV Core-core repulsion = 28379.557938 eV Total energy + Delta-G solvation = -4262.702305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.03189 -40.24258 -37.95515 -37.18255 -36.85592 -35.51745 -33.82243 -32.76999 -32.25510 -29.94888 -29.29840 -28.17647 -27.75345 -24.83543 -24.34251 -22.79780 -22.52250 -21.89835 -20.94054 -20.12660 -19.31668 -18.62973 -18.28508 -17.15912 -16.67352 -16.51136 -16.01159 -15.46203 -15.21052 -15.00554 -14.68918 -14.45463 -14.13542 -13.66414 -13.59765 -13.40144 -13.14852 -13.00329 -12.75019 -12.64139 -12.23415 -12.17575 -12.13347 -12.00221 -11.51180 -11.23200 -11.11586 -11.06036 -10.96534 -10.69976 -10.62919 -10.50010 -10.29369 -10.20773 -10.00491 -9.71089 -9.44635 -9.13027 -8.71354 -8.46378 -8.16210 -6.51166 -5.49141 -2.70190 1.65738 2.06843 2.50355 3.03169 3.16864 3.48827 3.60838 3.67218 3.70896 3.97119 4.48720 4.55471 4.63640 4.75404 4.80782 4.88114 4.89427 5.08212 5.24917 5.29439 5.44643 5.46817 5.48298 5.63633 5.70138 5.77793 5.83777 5.86451 5.91432 5.97494 6.00072 6.04785 6.22652 6.29131 6.35655 6.38334 6.71401 6.78109 6.95287 7.21008 7.23846 7.52893 7.72099 7.94327 8.16450 8.64713 8.72667 9.80199 10.34486 10.69561 11.74720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.006786 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.600973 B = 4125.212335 C = 6212.705138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.184 3.816 3 H 0.053 0.947 4 N -0.690 5.690 5 C -0.190 4.190 6 H 0.059 0.941 7 C -0.018 4.018 8 N -0.937 5.937 9 Si 0.893 3.107 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.109 3.891 19 N -0.611 5.611 20 C 0.452 3.548 21 O -0.409 6.409 22 C 0.085 3.915 23 N -0.492 5.492 24 C 0.430 3.570 25 O -0.421 6.421 26 N -0.301 5.301 27 N -0.298 5.298 28 C 0.411 3.589 29 O -0.443 6.443 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.376 0.624 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.401 0.599 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 2.041 20.667 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.074 3.926 3 H 0.071 0.929 4 N -0.330 5.330 5 C -0.321 4.321 6 H 0.077 0.923 7 C -0.212 4.212 8 N -0.588 5.588 9 Si 0.726 3.274 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.225 1.225 13 C 0.045 3.955 14 H 0.084 0.916 15 C -0.166 4.166 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.014 4.014 19 N -0.349 5.349 20 C 0.234 3.766 21 O -0.274 6.274 22 C -0.043 4.043 23 N -0.211 5.211 24 C 0.120 3.880 25 O -0.218 6.218 26 N -0.145 5.145 27 N -0.142 5.142 28 C 0.101 3.899 29 O -0.243 6.243 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.258 0.742 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.727 3.148 18.587 19.435 hybrid contribution -0.488 -0.909 0.502 1.148 sum 4.239 2.240 19.089 19.681 Atomic orbital electron populations 1.22570 0.99675 1.00200 1.00465 1.20351 0.90632 0.96375 0.85288 0.92894 1.42236 1.73302 1.15238 1.02242 1.18913 1.31873 0.96781 0.84566 0.92251 1.24508 1.02804 0.96643 0.97239 1.69630 1.49591 1.11903 1.27678 0.86301 0.77143 0.78361 0.85602 1.21099 1.22047 1.22484 1.21564 0.78493 0.99766 0.95641 0.91551 1.22007 0.99928 1.00753 0.93924 1.21519 0.95324 1.00844 0.98008 1.21988 0.96274 1.01439 0.97488 1.21727 0.95834 0.99260 0.84616 1.47817 1.09177 1.58311 1.19634 1.20533 0.87935 0.83142 0.85030 1.91395 1.66857 1.46848 1.22268 1.21758 0.96061 0.99077 0.87411 1.46526 1.49549 1.06938 1.18126 1.21196 0.96189 0.86415 0.84179 1.85214 1.42538 1.13661 1.80424 1.78322 1.23130 0.93242 1.19779 1.78260 1.18637 1.14678 1.02601 1.21144 0.99707 0.78570 0.90527 1.84819 1.32490 1.54204 1.52811 0.94552 0.92428 0.93815 0.79018 0.94253 0.91716 0.90511 0.92001 0.91863 0.91585 0.91180 0.91497 0.90716 0.87099 0.86662 0.74246 0.72896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.48 37.16 0.32 -2.66 16 2 C 0.18 3.52 1.83 -67.93 -0.12 3.40 16 3 H 0.05 1.12 6.39 -51.93 -0.33 0.78 16 4 N -0.69 -17.11 3.26 -53.43 -0.17 -17.29 16 5 C -0.19 -5.45 8.08 -15.07 -0.12 -5.57 16 6 H 0.06 1.75 7.83 -52.48 -0.41 1.33 16 7 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 8 N -0.94 -29.68 13.06 55.49 0.72 -28.96 16 9 Si 0.89 24.85 29.55 -169.99 -5.02 19.83 16 10 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 11 H -0.29 -8.47 7.11 56.52 0.40 -8.07 16 12 H -0.30 -8.18 7.11 56.52 0.40 -7.77 16 13 C 0.15 2.19 2.61 -67.60 -0.18 2.01 16 14 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 15 C -0.13 -1.41 4.46 -26.61 -0.12 -1.53 16 16 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 17 C -0.13 -0.98 6.10 -26.38 -0.16 -1.14 16 18 C 0.11 0.96 6.38 -3.48 -0.02 0.94 16 19 N -0.61 -8.08 2.97 -164.96 -0.49 -8.57 16 20 C 0.45 7.21 7.50 -10.99 -0.08 7.13 16 21 O -0.41 -8.85 9.24 5.55 0.05 -8.80 16 22 C 0.09 1.02 4.85 -5.20 -0.03 1.00 16 23 N -0.49 -7.74 2.25 -121.36 -0.27 -8.01 16 24 C 0.43 7.83 9.15 -88.81 -0.81 7.02 16 25 O -0.42 -6.85 13.58 -18.59 -0.25 -7.10 16 26 N -0.30 -6.25 12.72 29.65 0.38 -5.88 16 27 N -0.30 -5.90 12.72 29.66 0.38 -5.52 16 28 C 0.41 6.78 9.15 -88.81 -0.81 5.97 16 29 O -0.44 -5.60 13.58 -18.61 -0.25 -5.85 16 30 H 0.04 0.52 6.86 -51.93 -0.36 0.17 16 31 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.38 10.22 7.70 -40.82 -0.31 9.91 16 34 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.83 6.84 -51.93 -0.36 0.48 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.49 5.93 -51.93 -0.31 0.18 16 43 H 0.11 1.06 7.73 -51.93 -0.40 0.66 16 44 H 0.12 1.02 7.90 -51.93 -0.41 0.61 16 45 H 0.40 3.49 9.06 45.56 0.41 3.90 16 46 H 0.41 3.85 9.06 45.56 0.41 4.26 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -40.19 370.85 -6.73 -46.92 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.99 Total: 8.87 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -2.40 Total: 14.76 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: 0.54 Total: -74.22 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.45 Total: -21.75 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.02 Total: 19.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.19 -6.73 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689912571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.077 kcal (2) G-P(sol) polarization free energy of solvation -40.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds