Wall clock time and date at job start Tue Mar 31 2020 22:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46836 * 2 1 4 4 N 1.46501 * 109.47271 * 240.00663 * 2 1 3 5 5 C 1.36929 * 120.00675 * 76.54626 * 4 2 1 6 6 H 1.08006 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00534 * 180.02562 * 5 4 2 8 8 N 1.31628 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00342 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46955 * 119.99937 * 9 7 5 12 12 H 1.48496 * 109.47081 * 239.99622 * 9 7 5 13 13 C 1.52999 * 109.47144 * 119.99877 * 2 1 3 14 14 H 1.09002 * 109.58375 * 72.27860 * 13 2 1 15 15 C 1.53190 * 109.70436 * 311.91965 * 13 2 1 16 16 C 1.53038 * 109.31002 * 185.50423 * 15 13 2 17 17 C 1.53041 * 109.53780 * 61.36987 * 16 15 13 18 18 C 1.53627 * 109.24289 * 298.51157 * 17 16 15 19 19 N 1.46926 * 108.54424 * 54.85086 * 18 17 16 20 20 C 1.34770 * 120.62670 * 126.37447 * 19 18 17 21 21 O 1.21289 * 119.99952 * 174.87570 * 20 19 18 22 22 C 1.50701 * 120.00553 * 354.87497 * 20 19 18 23 23 N 1.46494 * 109.47313 * 180.02562 * 22 20 19 24 24 C 1.36376 * 125.96475 * 269.97373 * 23 22 20 25 25 O 1.35629 * 125.98246 * 0.04478 * 24 23 22 26 26 N 1.30899 * 108.02730 * 180.02562 * 24 23 22 27 27 N 1.40113 * 107.93878 * 359.97438 * 26 24 23 28 28 C 1.30906 * 107.93967 * 359.97438 * 27 26 24 29 29 O 1.35636 * 125.98708 * 179.97438 * 28 27 26 30 30 H 1.08997 * 109.47345 * 306.19611 * 1 2 3 31 31 H 1.09001 * 109.47309 * 66.20221 * 1 2 3 32 32 H 1.09003 * 109.46569 * 186.19543 * 1 2 3 33 33 H 0.97006 * 119.99546 * 256.55588 * 4 2 1 34 34 H 0.96996 * 120.00095 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.49936 * 305.45852 * 15 13 2 36 36 H 1.09005 * 109.49392 * 65.55816 * 15 13 2 37 37 H 1.09000 * 109.45636 * 181.38269 * 16 15 13 38 38 H 1.08995 * 109.46602 * 301.34538 * 16 15 13 39 39 H 1.09003 * 109.50007 * 58.58009 * 17 16 15 40 40 H 1.08994 * 109.50282 * 178.67705 * 17 16 15 41 41 H 1.09004 * 109.73104 * 295.11835 * 18 17 16 42 42 H 1.08991 * 109.66780 * 174.55147 * 18 17 16 43 43 H 1.08992 * 109.46638 * 59.99670 * 22 20 19 44 44 H 1.09002 * 109.46678 * 299.99882 * 22 20 19 45 45 H 0.96701 * 113.99864 * 269.99633 * 25 24 23 46 46 H 0.96703 * 113.99780 * 90.02193 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 1.9866 -0.0604 -2.4115 6 1 1.6018 0.9459 -2.4882 7 6 2.4488 -0.7148 -3.5450 8 7 2.9182 -1.9410 -3.4516 9 14 2.4060 0.1450 -5.2028 10 1 1.8384 1.5075 -5.0393 11 1 3.7853 0.2457 -5.7439 12 1 1.5611 -0.6343 -6.1430 13 6 2.0400 -0.7212 1.2492 14 1 1.8671 -1.7927 1.1487 15 6 1.3038 -0.1959 2.4857 16 6 1.9142 -0.8214 3.7419 17 6 3.3870 -0.4196 3.8498 18 6 4.1481 -0.9522 2.6262 19 7 3.4781 -0.4675 1.4118 20 6 4.1706 0.1924 0.4625 21 8 3.6283 0.5059 -0.5762 22 6 5.6188 0.5409 0.6913 23 7 6.1410 1.2509 -0.4788 24 6 6.7294 0.6770 -1.5671 25 8 6.9327 -0.6506 -1.7557 26 7 7.0633 1.6320 -2.3978 27 7 6.6786 2.8532 -1.8286 28 6 6.1229 2.6009 -0.6705 29 8 5.6191 3.5213 0.1891 30 1 -0.3634 0.6069 0.8293 31 1 -0.3634 0.4147 -0.9403 32 1 -0.3632 -1.0217 0.1109 33 1 2.3642 -1.5942 -1.1274 34 1 3.2416 -2.3982 -4.2436 35 1 1.4024 0.8884 2.5344 36 1 0.2490 -0.4633 2.4219 37 1 1.3761 -0.4682 4.6216 38 1 1.8375 -1.9070 3.6812 39 1 3.4660 0.6669 3.8857 40 1 3.8150 -0.8461 4.7570 41 1 4.1435 -2.0422 2.6358 42 1 5.1755 -0.5889 2.6465 43 1 6.1919 -0.3728 0.8481 44 1 5.7043 1.1789 1.5710 45 1 7.7805 -0.9705 -1.4182 46 1 4.6842 3.7229 0.0459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689912571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:04 Heat of formation + Delta-G solvation = 7.030715 kcal Electronic energy + Delta-G solvation = -32643.870098 eV Core-core repulsion = 28379.557938 eV Total energy + Delta-G solvation = -4264.312160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.30503 -41.40853 -39.13499 -38.29283 -38.03509 -37.03485 -35.16698 -34.15256 -33.64985 -31.48372 -30.64748 -29.55387 -29.01772 -26.22581 -25.67985 -24.18611 -23.81881 -23.14279 -21.97837 -21.41025 -20.50854 -19.82881 -19.50275 -18.84754 -18.08198 -17.68552 -17.19270 -16.82130 -16.57777 -16.35708 -15.98443 -15.53520 -15.43873 -15.06098 -14.82495 -14.66129 -14.32465 -14.17237 -14.02936 -13.85769 -13.63276 -13.48431 -13.34097 -13.19239 -12.99025 -12.88936 -12.58327 -12.49289 -12.40154 -12.13906 -11.92598 -11.67634 -11.60122 -11.56397 -11.43902 -11.38676 -11.11144 -10.78723 -10.48950 -9.84634 -9.36538 -8.54829 -7.80048 -4.94293 0.41981 0.87450 1.18769 1.33978 1.41081 1.44011 1.87653 2.11101 2.26053 2.61008 2.90169 3.48732 3.54295 3.55748 3.87508 3.93274 4.00505 4.07131 4.16647 4.21746 4.31162 4.34773 4.39238 4.42685 4.67456 4.73342 4.75426 4.78606 4.88001 4.97518 5.08338 5.10225 5.17671 5.23252 5.28995 5.32459 5.43034 5.49529 5.57031 5.61600 5.90995 6.20375 6.42087 6.46873 6.64249 6.83764 7.47811 7.55815 8.29226 8.49798 9.44744 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.006786 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.600973 B = 4125.212335 C = 6212.705138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.038 0.962 4 N -0.692 5.692 5 C -0.155 4.155 6 H 0.048 0.952 7 C -0.081 4.081 8 N -0.967 5.967 9 Si 0.935 3.065 10 H -0.279 1.279 11 H -0.314 1.314 12 H -0.293 1.293 13 C 0.154 3.846 14 H 0.052 0.948 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.127 4.127 18 C 0.100 3.900 19 N -0.605 5.605 20 C 0.450 3.550 21 O -0.482 6.482 22 C 0.087 3.913 23 N -0.486 5.486 24 C 0.431 3.569 25 O -0.437 6.437 26 N -0.351 5.351 27 N -0.341 5.341 28 C 0.423 3.577 29 O -0.429 6.429 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.363 0.637 34 H 0.237 0.763 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.143 0.857 44 H 0.159 0.841 45 H 0.430 0.570 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 2.198 25.075 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.055 0.945 4 N -0.330 5.330 5 C -0.288 4.288 6 H 0.066 0.934 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.243 1.243 12 H -0.221 1.221 13 C 0.050 3.950 14 H 0.070 0.930 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.165 4.165 18 C -0.022 4.022 19 N -0.342 5.342 20 C 0.234 3.766 21 O -0.352 6.352 22 C -0.039 4.039 23 N -0.205 5.205 24 C 0.120 3.880 25 O -0.239 6.239 26 N -0.195 5.195 27 N -0.185 5.185 28 C 0.112 3.888 29 O -0.232 6.232 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.194 0.806 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.176 0.824 45 H 0.292 0.708 46 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 4.696 3.318 23.114 23.818 hybrid contribution -0.529 -0.926 -0.629 1.238 sum 4.167 2.392 22.484 22.992 Atomic orbital electron populations 1.22435 0.98425 1.00812 1.00321 1.20485 0.91178 0.95623 0.85343 0.94455 1.42279 1.73244 1.14567 1.02870 1.19001 1.28127 0.95643 0.86046 0.93414 1.24955 1.05151 0.97581 0.99461 1.69731 1.52271 1.12922 1.27306 0.85577 0.75880 0.78022 0.83586 1.20438 1.24277 1.22114 1.21360 0.80145 0.98339 0.95180 0.92969 1.21934 0.99737 1.00809 0.93246 1.21524 0.96306 1.00681 0.96946 1.21972 0.95144 1.01780 0.97593 1.22122 0.97277 0.99708 0.83056 1.47939 1.08620 1.57113 1.20555 1.21199 0.89326 0.81761 0.84347 1.91359 1.68573 1.50309 1.24971 1.22091 0.93464 1.01154 0.87185 1.46546 1.48920 1.06627 1.18439 1.21240 0.95634 0.86634 0.84465 1.85151 1.44964 1.12749 1.81074 1.78173 1.25453 0.94287 1.21594 1.78117 1.20898 1.14933 1.04547 1.21200 0.98286 0.79404 0.89908 1.84811 1.33799 1.53119 1.51459 0.90771 0.95561 0.93643 0.80618 0.95335 0.91595 0.90255 0.90111 0.91871 0.91194 0.88394 0.91097 0.87735 0.83884 0.82386 0.70785 0.70999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.51 8.48 71.98 0.61 -4.90 16 2 C 0.18 6.90 1.83 44.99 0.08 6.98 16 3 H 0.04 1.57 6.39 -2.39 -0.02 1.56 16 4 N -0.69 -34.93 3.26 -322.94 -1.05 -35.98 16 5 C -0.15 -9.12 8.08 84.03 0.68 -8.45 16 6 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 7 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 8 N -0.97 -63.30 13.06 21.65 0.28 -63.02 16 9 Si 0.93 52.93 29.55 68.60 2.03 54.96 16 10 H -0.28 -15.23 7.11 99.48 0.71 -14.52 16 11 H -0.31 -18.65 7.11 99.48 0.71 -17.94 16 12 H -0.29 -16.19 7.11 99.48 0.71 -15.48 16 13 C 0.15 4.24 2.61 44.97 0.12 4.35 16 14 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 15 C -0.12 -2.22 4.46 30.67 0.14 -2.08 16 16 C -0.12 -1.44 5.88 30.62 0.18 -1.26 16 17 C -0.13 -1.17 6.10 30.82 0.19 -0.98 16 18 C 0.10 1.28 6.38 86.51 0.55 1.83 16 19 N -0.61 -14.29 2.97 -794.19 -2.36 -16.65 16 20 C 0.45 13.45 7.50 87.66 0.66 14.10 16 21 O -0.48 -20.82 9.24 -3.06 -0.03 -20.85 16 22 C 0.09 1.80 4.85 85.63 0.41 2.21 16 23 N -0.49 -14.59 2.25 -759.28 -1.71 -16.29 16 24 C 0.43 15.71 9.15 179.72 1.65 17.35 16 25 O -0.44 -14.12 13.58 -89.42 -1.21 -15.33 16 26 N -0.35 -15.00 12.72 -173.66 -2.21 -17.21 16 27 N -0.34 -13.73 12.72 -173.65 -2.21 -15.94 16 28 C 0.42 13.58 9.15 179.72 1.65 15.23 16 29 O -0.43 -9.94 13.58 -89.50 -1.22 -11.15 16 30 H 0.07 1.97 6.86 -2.39 -0.02 1.96 16 31 H 0.03 1.04 7.94 -2.39 -0.02 1.02 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.36 20.14 7.70 -92.70 -0.71 19.43 16 34 H 0.24 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.45 6.84 -2.38 -0.02 1.44 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.10 0.74 5.93 -2.39 -0.01 0.72 16 43 H 0.14 2.08 7.73 -2.39 -0.02 2.06 16 44 H 0.16 1.93 7.90 -2.39 -0.02 1.91 16 45 H 0.43 7.03 9.06 -74.06 -0.67 6.35 16 46 H 0.43 7.18 9.06 -74.06 -0.67 6.51 16 Total: -1.00 -93.94 370.85 -3.31 -97.24 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -1.00 Total: 20.42 kcal Atomic # 6 Polarization: 32.42 SS G_CDS: 7.37 Total: 39.79 kcal Atomic # 7 Polarization: -155.84 SS G_CDS: -9.25 Total: -165.08 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.46 Total: -47.33 kcal Atomic # 14 Polarization: 52.93 SS G_CDS: 2.03 Total: 54.96 kcal Total: -93.94 -3.31 -97.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689912571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.274 kcal (2) G-P(sol) polarization free energy of solvation -93.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds