Wall clock time and date at job start Tue Mar 31 2020 22:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46771 * 2 1 4 4 N 1.46495 * 109.46962 * 240.00404 * 2 1 3 5 5 C 1.36934 * 120.00736 * 84.99804 * 4 2 1 6 6 H 1.08004 * 119.99432 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00196 * 179.97438 * 5 4 2 8 8 N 1.31608 * 120.00388 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99894 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47273 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47171 * 120.00266 * 9 7 5 12 12 H 1.48497 * 109.47714 * 240.00353 * 9 7 5 13 13 C 1.52999 * 109.46922 * 119.99760 * 2 1 3 14 14 H 1.08996 * 109.70686 * 306.37763 * 13 2 1 15 15 C 1.53191 * 109.58687 * 66.73889 * 13 2 1 16 16 C 1.53037 * 109.31533 * 174.42020 * 15 13 2 17 17 C 1.53050 * 109.53595 * 298.63400 * 16 15 13 18 18 C 1.52758 * 109.38188 * 61.23728 * 17 16 15 19 19 N 1.46922 * 109.00994 * 305.58636 * 18 17 16 20 20 C 1.34772 * 120.63234 * 233.58176 * 19 18 17 21 21 O 1.21283 * 120.00229 * 174.81213 * 20 19 18 22 22 C 1.50706 * 120.00257 * 354.81894 * 20 19 18 23 23 N 1.46496 * 109.47383 * 179.97438 * 22 20 19 24 24 C 1.36371 * 125.96019 * 269.69079 * 23 22 20 25 25 O 1.35629 * 125.98909 * 0.03667 * 24 23 22 26 26 N 1.30911 * 108.02092 * 179.88762 * 24 23 22 27 27 N 1.40115 * 107.93946 * 0.36724 * 26 24 23 28 28 C 1.30904 * 107.93881 * 359.77058 * 27 26 24 29 29 O 1.35628 * 125.98884 * 180.02562 * 28 27 26 30 30 H 1.09005 * 109.47439 * 64.93792 * 1 2 3 31 31 H 1.09000 * 109.46882 * 184.93546 * 1 2 3 32 32 H 1.09003 * 109.47103 * 304.93614 * 1 2 3 33 33 H 0.97007 * 119.99286 * 264.99309 * 4 2 1 34 34 H 0.97003 * 120.00633 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.49279 * 294.37145 * 15 13 2 36 36 H 1.08999 * 109.49810 * 54.46629 * 15 13 2 37 37 H 1.09001 * 109.46013 * 58.65039 * 16 15 13 38 38 H 1.08996 * 109.46120 * 178.62759 * 16 15 13 39 39 H 1.08998 * 109.49505 * 181.31936 * 17 16 15 40 40 H 1.09006 * 109.49417 * 301.37995 * 17 16 15 41 41 H 1.09001 * 109.50439 * 185.70678 * 18 17 16 42 42 H 1.08998 * 109.43118 * 65.42733 * 18 17 16 43 43 H 1.09001 * 109.46888 * 59.99044 * 22 20 19 44 44 H 1.08998 * 109.46526 * 300.00049 * 22 20 19 45 45 H 0.96694 * 114.00371 * 90.00172 * 25 24 23 46 46 H 0.96698 * 114.00134 * 269.97719 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5090 8 7 2.9252 -1.9387 -3.4499 9 14 2.7899 0.2700 -5.1183 10 1 2.3750 1.6822 -4.9212 11 1 4.2069 0.2280 -5.5607 12 1 1.9297 -0.3593 -6.1523 13 6 2.0399 -0.7212 1.2493 14 1 1.5886 -0.2804 2.1381 15 6 1.6737 -2.2066 1.1702 16 6 2.3051 -2.9472 2.3513 17 6 3.8287 -2.8208 2.2791 18 6 4.2199 -1.3468 2.3672 19 7 3.5021 -0.5982 1.3266 20 6 4.1725 0.1823 0.4561 21 8 3.5811 0.7205 -0.4557 22 6 5.6571 0.3862 0.6156 23 7 6.1461 1.2675 -0.4476 24 6 6.6084 0.8704 -1.6675 25 8 6.6953 -0.4091 -2.1090 26 7 6.9506 1.9408 -2.3390 27 7 6.7094 3.0559 -1.5256 28 6 6.2239 2.6277 -0.3879 29 8 5.8611 3.4012 0.6655 30 1 -0.3634 0.4353 -0.9309 31 1 -0.3633 -1.0239 0.0884 32 1 -0.3633 0.5885 0.8425 33 1 2.2490 -1.6317 -1.1526 34 1 3.2486 -2.3960 -4.2419 35 1 0.5900 -2.3166 1.2092 36 1 2.0489 -2.6246 0.2361 37 1 1.9485 -2.5124 3.2850 38 1 2.0259 -4.0000 2.3109 39 1 4.2787 -3.3681 3.1074 40 1 4.1836 -3.2336 1.3348 41 1 5.2944 -1.2457 2.2147 42 1 3.9499 -0.9581 3.3491 43 1 6.1649 -0.5762 0.5518 44 1 5.8593 0.8399 1.5859 45 1 5.9027 -0.7222 -2.5658 46 1 6.5743 3.5645 1.2976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689912572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:08 Heat of formation + Delta-G solvation = 7.411630 kcal Electronic energy + Delta-G solvation = -32915.687215 eV Core-core repulsion = 28651.391573 eV Total energy + Delta-G solvation = -4264.295642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.31118 -41.45085 -39.10335 -38.33626 -38.00303 -36.99897 -35.17447 -34.09569 -33.67240 -31.27731 -30.63903 -29.73211 -29.15257 -26.05242 -25.58824 -24.59788 -23.80522 -23.10697 -21.99409 -21.56132 -20.12973 -19.77937 -19.39868 -19.02142 -18.11905 -17.66893 -17.23101 -16.70672 -16.44059 -16.26405 -16.20704 -15.68708 -15.52650 -15.05201 -14.94216 -14.55074 -14.32626 -14.10987 -14.01382 -13.85110 -13.68585 -13.40764 -13.34363 -13.10129 -13.03994 -12.88604 -12.66400 -12.49372 -12.35655 -12.15393 -11.92898 -11.69073 -11.58262 -11.57124 -11.42502 -11.35146 -11.12972 -10.84501 -10.49802 -9.71914 -9.33703 -8.63099 -7.80068 -4.96854 0.39502 0.85062 1.18214 1.35859 1.42365 1.47158 1.85015 2.13934 2.26174 2.60679 2.90043 3.48654 3.51515 3.53985 3.93687 3.96675 4.04127 4.09075 4.13536 4.20656 4.28176 4.32288 4.39835 4.46008 4.65085 4.69294 4.75136 4.83833 4.88780 4.97265 5.04531 5.12889 5.16721 5.24705 5.30642 5.35906 5.45879 5.53439 5.61237 5.66641 5.92674 6.11631 6.43686 6.45074 6.64736 6.82619 7.47659 7.56207 8.28268 8.55187 9.43171 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.007024 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.458638 B = 3985.424660 C = 5780.833626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.053 0.947 4 N -0.698 5.698 5 C -0.146 4.146 6 H 0.038 0.962 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.927 3.073 10 H -0.296 1.296 11 H -0.299 1.299 12 H -0.299 1.299 13 C 0.154 3.846 14 H 0.093 0.907 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.134 4.134 18 C 0.104 3.896 19 N -0.603 5.603 20 C 0.467 3.533 21 O -0.496 6.496 22 C 0.086 3.914 23 N -0.486 5.486 24 C 0.425 3.575 25 O -0.441 6.441 26 N -0.345 5.345 27 N -0.343 5.343 28 C 0.429 3.571 29 O -0.429 6.429 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.372 0.628 34 H 0.242 0.758 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.165 0.835 45 H 0.424 0.576 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -1.332 23.584 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.071 0.929 4 N -0.339 5.339 5 C -0.279 4.279 6 H 0.056 0.944 7 C -0.263 4.263 8 N -0.621 5.621 9 Si 0.762 3.238 10 H -0.222 1.222 11 H -0.227 1.227 12 H -0.227 1.227 13 C 0.050 3.950 14 H 0.111 0.889 15 C -0.166 4.166 16 C -0.149 4.149 17 C -0.172 4.172 18 C -0.017 4.017 19 N -0.339 5.339 20 C 0.251 3.749 21 O -0.369 6.369 22 C -0.040 4.040 23 N -0.205 5.205 24 C 0.114 3.886 25 O -0.244 6.244 26 N -0.189 5.189 27 N -0.188 5.188 28 C 0.118 3.882 29 O -0.232 6.232 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.206 0.794 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.156 0.844 44 H 0.182 0.818 45 H 0.286 0.714 46 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 5.510 0.102 21.837 22.521 hybrid contribution -0.672 -0.871 -0.852 1.392 sum 4.838 -0.769 20.985 21.549 Atomic orbital electron populations 1.22463 0.98985 1.00944 0.99992 1.20749 0.90859 0.96633 0.85976 0.92904 1.42409 1.77034 1.09094 1.05351 1.19020 1.29136 0.91920 0.87861 0.94395 1.24749 1.06338 0.96586 0.98667 1.69707 1.55837 1.08682 1.27904 0.85731 0.76728 0.77573 0.83811 1.22250 1.22736 1.22734 1.21458 0.79736 0.95973 0.97803 0.88889 1.21910 1.00940 0.94783 0.99016 1.21481 0.95423 1.00284 0.97669 1.21844 0.96338 0.96405 1.02616 1.21949 0.97312 0.91255 0.91230 1.47917 1.06751 1.46396 1.32810 1.21025 0.89786 0.81506 0.82548 1.91100 1.67623 1.47961 1.30193 1.22112 0.93088 0.97248 0.91589 1.46548 1.51002 1.07284 1.15646 1.21324 0.96123 0.87519 0.83668 1.84713 1.44305 1.19553 1.75786 1.78207 1.25763 0.94357 1.20552 1.78113 1.21660 1.17569 1.01418 1.21160 0.96483 0.79055 0.91467 1.85001 1.40664 1.64640 1.32933 0.95767 0.93063 0.91602 0.79381 0.94813 0.90989 0.94314 0.89829 0.91685 0.87930 0.93851 0.88223 0.88491 0.84364 0.81779 0.71449 0.70226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 9.38 71.98 0.68 -5.04 16 2 C 0.17 6.32 1.88 44.99 0.08 6.41 16 3 H 0.05 2.35 5.90 -6.85 -0.04 2.31 16 4 N -0.70 -33.24 3.62 -322.95 -1.17 -34.41 16 5 C -0.15 -8.23 7.99 84.03 0.67 -7.56 16 6 H 0.04 2.32 7.83 -2.91 -0.02 2.29 16 7 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 8 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 9 Si 0.93 50.32 29.55 68.60 2.03 52.35 16 10 H -0.30 -16.45 7.11 99.48 0.71 -15.74 16 11 H -0.30 -16.42 7.11 99.48 0.71 -15.71 16 12 H -0.30 -16.17 7.11 99.48 0.71 -15.47 16 13 C 0.15 4.14 2.72 44.97 0.12 4.26 16 14 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.13 -3.28 4.87 30.67 0.15 -3.13 16 16 C -0.11 -1.86 5.89 30.62 0.18 -1.68 16 17 C -0.13 -1.94 6.07 30.53 0.19 -1.75 16 18 C 0.10 1.33 6.30 86.22 0.54 1.87 16 19 N -0.60 -14.16 2.98 -795.86 -2.37 -16.53 16 20 C 0.47 13.95 7.46 87.66 0.65 14.61 16 21 O -0.50 -21.08 9.18 -3.04 -0.03 -21.11 16 22 C 0.09 1.80 4.90 85.64 0.42 2.22 16 23 N -0.49 -14.66 2.25 -759.27 -1.71 -16.37 16 24 C 0.42 16.00 9.15 179.71 1.65 17.64 16 25 O -0.44 -15.86 13.57 -89.42 -1.21 -17.08 16 26 N -0.34 -14.81 12.72 -173.65 -2.21 -17.02 16 27 N -0.34 -13.53 12.72 -173.66 -2.21 -15.73 16 28 C 0.43 13.34 9.15 179.72 1.65 14.99 16 29 O -0.43 -9.14 13.58 -89.40 -1.21 -10.36 16 30 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.05 1.69 6.55 -2.39 -0.02 1.68 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.37 18.75 5.60 -92.70 -0.52 18.23 16 34 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.07 1.81 6.80 -2.39 -0.02 1.79 16 36 H 0.04 1.34 6.03 -2.39 -0.01 1.32 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 0.81 5.96 -2.39 -0.01 0.80 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.14 2.41 7.47 -2.39 -0.02 2.39 16 44 H 0.16 1.72 8.11 -2.39 -0.02 1.70 16 45 H 0.42 16.19 9.06 -74.06 -0.67 15.52 16 46 H 0.44 2.88 9.06 -74.06 -0.67 2.21 16 Total: -1.00 -84.68 367.62 -3.19 -87.88 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.83 Total: 26.09 kcal Atomic # 6 Polarization: 31.63 SS G_CDS: 7.44 Total: 39.07 kcal Atomic # 7 Polarization: -147.47 SS G_CDS: -9.38 Total: -156.84 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.46 Total: -48.54 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.03 Total: 52.35 kcal Total: -84.68 -3.19 -87.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689912572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.288 kcal (2) G-P(sol) polarization free energy of solvation -84.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds