Wall clock time and date at job start Tue Mar 31 2020 22:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 N 1.46501 * 109.46894 * 119.99813 * 2 1 3 5 5 C 1.34774 * 120.00097 * 274.99902 * 4 2 1 6 6 O 1.21287 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.47201 * 179.97438 * 7 5 4 9 9 C 1.36376 * 125.96643 * 269.68790 * 8 7 5 10 10 O 1.35634 * 125.98424 * 0.04034 * 9 8 7 11 11 N 1.30897 * 108.02532 * 179.88466 * 9 8 7 12 12 N 1.40120 * 107.94301 * 0.37909 * 11 9 8 13 13 C 1.30905 * 107.93500 * 359.75864 * 12 11 9 14 14 O 1.35631 * 125.98508 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46736 * 239.99609 * 2 1 3 16 16 H 1.09004 * 109.51596 * 185.08494 * 15 2 1 17 17 C 1.53042 * 109.49781 * 65.00720 * 15 2 1 18 18 C 1.53040 * 109.53664 * 178.68256 * 17 15 2 19 19 C 1.53187 * 109.34235 * 61.34378 * 18 17 15 20 20 N 1.46938 * 108.77230 * 305.41572 * 19 18 17 21 21 C 1.36936 * 120.60553 * 233.53080 * 20 19 18 22 22 H 1.08000 * 120.00365 * 152.29769 * 21 20 19 23 23 C 1.38816 * 119.99752 * 332.30098 * 21 20 19 24 24 N 1.31620 * 120.00423 * 342.59835 * 23 21 20 25 25 Si 1.86808 * 119.99679 * 162.59694 * 23 21 20 26 26 H 1.48502 * 109.46959 * 94.35022 * 25 23 21 27 27 H 1.48498 * 109.46995 * 214.34461 * 25 23 21 28 28 H 1.48493 * 109.47133 * 334.34945 * 25 23 21 29 29 C 1.46926 * 118.76364 * 53.55506 * 20 19 18 30 30 H 1.09001 * 109.47248 * 300.00532 * 1 2 3 31 31 H 1.09006 * 109.46876 * 59.99754 * 1 2 3 32 32 H 1.08999 * 109.47300 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99949 * 94.99688 * 4 2 1 34 34 H 1.09001 * 109.47100 * 300.00054 * 7 5 4 35 35 H 1.08998 * 109.47434 * 60.00070 * 7 5 4 36 36 H 0.96700 * 113.99516 * 89.99528 * 10 9 8 37 37 H 0.96698 * 114.00330 * 270.02338 * 14 13 12 38 38 H 1.09000 * 109.46228 * 58.65993 * 17 15 2 39 39 H 1.08999 * 109.44547 * 298.68897 * 17 15 2 40 40 H 1.08994 * 109.49869 * 181.31616 * 18 17 15 41 41 H 1.09006 * 109.49497 * 301.37538 * 18 17 15 42 42 H 1.09001 * 109.58408 * 65.17035 * 19 18 17 43 43 H 1.08994 * 109.58759 * 185.59322 * 19 18 17 44 44 H 0.96991 * 120.00262 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.58515 * 186.62141 * 29 20 19 46 46 H 1.08999 * 109.58664 * 66.20103 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6487 -0.7287 3.5878 8 7 2.6987 0.2128 4.7090 9 6 3.7650 0.9889 5.0563 10 8 4.9642 1.0247 4.4237 11 7 3.4271 1.6957 6.1050 12 7 2.1106 1.3588 6.4467 13 6 1.6891 0.4619 5.5914 14 8 0.4633 -0.1185 5.5843 15 6 2.0399 -0.7214 -1.2492 16 1 3.1262 -0.8014 -1.2057 17 6 1.6355 0.0686 -2.4961 18 6 2.1733 -0.6348 -3.7443 19 6 1.5618 -2.0361 -3.8402 20 7 1.8218 -2.7524 -2.5839 21 6 2.4212 -3.9836 -2.5945 22 1 3.0037 -4.3081 -1.7449 23 6 2.2802 -4.8147 -3.6974 24 7 1.3205 -4.5926 -4.5704 25 14 3.4526 -6.2482 -3.9427 26 1 2.8561 -7.4797 -3.3657 27 1 3.6932 -6.4481 -5.3943 28 1 4.7402 -5.9564 -3.2630 29 6 1.4263 -2.1233 -1.3164 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 1.9758 -1.5505 3.8326 35 1 3.6478 -1.1213 3.3987 36 1 5.0148 1.6790 3.7134 37 1 0.4090 -0.9295 6.1082 38 1 2.0506 1.0748 -2.4390 39 1 0.5485 0.1267 -2.5520 40 1 1.9049 -0.0594 -4.6302 41 1 3.2583 -0.7151 -3.6776 42 1 0.4864 -1.9554 -3.9985 43 1 2.0159 -2.5769 -4.6705 44 1 1.2222 -5.1731 -5.3412 45 1 1.7908 -2.7222 -0.4818 46 1 0.3399 -2.0494 -1.2686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690505272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:15 Heat of formation + Delta-G solvation = -0.120059 kcal Electronic energy + Delta-G solvation = -30267.687131 eV Core-core repulsion = 26003.064890 eV Total energy + Delta-G solvation = -4264.622241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.60528 -40.15101 -38.49636 -38.23532 -37.39987 -35.46730 -34.59002 -33.21227 -31.38498 -30.57524 -29.86883 -28.60989 -27.91557 -25.42198 -24.09818 -23.08814 -22.52035 -22.25411 -21.19819 -20.43438 -19.19526 -19.18538 -18.67277 -17.86100 -17.16846 -16.79717 -16.48986 -15.90572 -15.68072 -15.38781 -15.02002 -14.58937 -14.47048 -13.96304 -13.73414 -13.60005 -13.35695 -13.23722 -13.05868 -12.73110 -12.54829 -12.49995 -12.38603 -11.93935 -11.78231 -11.69317 -11.11531 -11.02977 -10.93085 -10.85384 -10.70516 -10.60187 -10.31945 -10.23643 -10.02523 -9.94199 -9.72274 -9.71018 -9.51624 -9.21432 -8.56696 -6.78298 -5.90010 -3.32799 1.13686 1.41218 1.93348 2.19316 2.80725 2.94439 3.28025 3.36429 3.37448 3.45162 4.03549 4.26943 4.38117 4.48225 4.86612 4.89705 4.90509 5.06630 5.24804 5.28830 5.34398 5.43521 5.55074 5.57082 5.71222 5.73542 5.85032 5.97503 6.07732 6.11909 6.18344 6.32206 6.41490 6.46219 6.58606 6.64467 6.69179 6.74896 6.83883 6.95707 7.22484 7.29685 7.56812 7.58742 7.67363 7.85908 8.32978 9.09273 9.73042 10.29303 11.18154 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.002565 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.121967 B =10913.814472 C =11499.203935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.082 0.918 4 N -0.710 5.710 5 C 0.497 3.503 6 O -0.531 6.531 7 C 0.079 3.921 8 N -0.496 5.496 9 C 0.417 3.583 10 O -0.438 6.438 11 N -0.295 5.295 12 N -0.297 5.297 13 C 0.418 3.582 14 O -0.433 6.433 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.257 4.257 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.151 3.849 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.405 0.595 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.415 0.585 37 H 0.411 0.589 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.086 0.914 44 H 0.254 0.746 45 H 0.046 0.954 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 6.787 13.660 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.100 0.900 4 N -0.362 5.362 5 C 0.280 3.720 6 O -0.407 6.407 7 C -0.049 4.049 8 N -0.216 5.216 9 C 0.107 3.893 10 O -0.238 6.238 11 N -0.139 5.139 12 N -0.141 5.141 13 C 0.108 3.892 14 O -0.232 6.232 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.386 4.386 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.204 1.204 29 C 0.025 3.975 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.241 0.759 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.274 0.726 37 H 0.269 0.731 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.739 8.547 14.748 17.135 hybrid contribution 0.560 -2.364 -1.657 2.941 sum 2.299 6.184 13.091 14.659 Atomic orbital electron populations 1.22259 0.95099 1.02888 1.02092 1.21107 0.94399 0.96665 0.83183 0.89982 1.46132 1.66185 1.14515 1.09414 1.20532 0.78834 0.87829 0.84756 1.90781 1.49659 1.15652 1.84606 1.21778 1.06590 0.91881 0.84613 1.46596 1.12131 1.36800 1.26088 1.21273 0.82287 0.92226 0.93542 1.84897 1.22832 1.63128 1.52971 1.78359 1.03787 1.18991 1.12748 1.78359 1.02093 1.13789 1.19835 1.21253 0.82756 0.95744 0.89469 1.85022 1.19833 1.44708 1.73657 1.21975 1.00918 0.98133 0.92356 0.90909 1.21421 1.00590 0.97182 0.94670 1.22177 1.00603 0.99587 0.95782 1.20799 0.96644 0.87999 0.90195 1.44021 1.69924 1.17461 0.99895 1.19123 1.23938 0.92137 1.03431 0.91818 1.25033 0.97363 0.97666 0.99411 1.70032 1.30185 1.39668 1.14497 0.86321 0.80951 0.82400 0.77303 1.21436 1.21507 1.20438 1.20987 0.96198 0.90224 0.90118 0.92902 0.91201 0.91413 0.75919 0.85445 0.85058 0.72560 0.73118 0.93537 0.92192 0.93148 0.92788 0.96416 0.89544 0.93548 0.93538 0.95637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 8.76 37.16 0.33 -1.74 16 2 C 0.15 1.86 2.35 -67.93 -0.16 1.70 16 3 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 4 N -0.71 -7.18 5.01 -53.80 -0.27 -7.45 16 5 C 0.50 5.20 7.86 -10.99 -0.09 5.11 16 6 O -0.53 -7.83 16.09 5.55 0.09 -7.74 16 7 C 0.08 0.55 6.49 -5.20 -0.03 0.51 16 8 N -0.50 -4.90 2.25 -121.35 -0.27 -5.17 16 9 C 0.42 4.66 9.15 -88.81 -0.81 3.85 16 10 O -0.44 -3.65 13.57 -18.60 -0.25 -3.90 16 11 N -0.30 -4.12 12.72 29.65 0.38 -3.74 16 12 N -0.30 -4.14 12.72 29.66 0.38 -3.76 16 13 C 0.42 4.64 9.15 -88.81 -0.81 3.82 16 14 O -0.43 -3.53 13.58 -18.59 -0.25 -3.78 16 15 C -0.11 -1.63 2.27 -90.50 -0.21 -1.84 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.10 -1.51 4.89 -26.69 -0.13 -1.64 16 18 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 19 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 20 N -0.59 -13.41 3.00 -172.32 -0.52 -13.92 16 21 C -0.26 -6.49 9.58 -15.06 -0.14 -6.64 16 22 H 0.06 1.56 7.89 -52.49 -0.41 1.14 16 23 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 24 N -0.90 -24.87 11.19 55.49 0.62 -24.25 16 25 Si 0.90 20.47 29.59 -169.99 -5.03 15.44 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 C 0.15 2.67 5.26 -3.71 -0.02 2.65 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 32 H 0.07 0.86 6.23 -51.93 -0.32 0.54 16 33 H 0.41 3.45 7.28 -40.82 -0.30 3.15 16 34 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.42 1.87 9.06 45.56 0.41 2.28 16 37 H 0.41 0.80 9.06 45.56 0.41 1.21 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.90 6.63 -51.93 -0.34 0.55 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.19 6.04 -51.93 -0.31 1.87 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.05 0.76 6.75 -51.93 -0.35 0.41 16 46 H 0.03 0.47 6.06 -51.93 -0.31 0.16 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -35.97 375.74 -6.60 -42.57 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.79 Total: 3.16 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -2.35 Total: 6.90 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.32 Total: -58.30 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.42 Total: -15.43 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.97 -6.60 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690505272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.447 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds