Wall clock time and date at job start Tue Mar 31 2020 22:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47300 * 2 1 4 4 N 1.46501 * 109.46894 * 119.99813 * 2 1 3 5 5 C 1.34774 * 120.00097 * 274.99902 * 4 2 1 6 6 O 1.21287 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.47201 * 179.97438 * 7 5 4 9 9 C 1.36376 * 125.96643 * 269.68790 * 8 7 5 10 10 O 1.35634 * 125.98424 * 0.04034 * 9 8 7 11 11 N 1.30897 * 108.02532 * 179.88466 * 9 8 7 12 12 N 1.40120 * 107.94301 * 0.37909 * 11 9 8 13 13 C 1.30905 * 107.93500 * 359.75864 * 12 11 9 14 14 O 1.35631 * 125.98508 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46736 * 239.99609 * 2 1 3 16 16 H 1.09004 * 109.51596 * 185.08494 * 15 2 1 17 17 C 1.53042 * 109.49781 * 65.00720 * 15 2 1 18 18 C 1.53040 * 109.53664 * 178.68256 * 17 15 2 19 19 C 1.53187 * 109.34235 * 61.34378 * 18 17 15 20 20 N 1.46938 * 108.77230 * 305.41572 * 19 18 17 21 21 C 1.36936 * 120.60553 * 233.53080 * 20 19 18 22 22 H 1.08000 * 120.00365 * 152.29769 * 21 20 19 23 23 C 1.38816 * 119.99752 * 332.30098 * 21 20 19 24 24 N 1.31620 * 120.00423 * 342.59835 * 23 21 20 25 25 Si 1.86808 * 119.99679 * 162.59694 * 23 21 20 26 26 H 1.48502 * 109.46959 * 94.35022 * 25 23 21 27 27 H 1.48498 * 109.46995 * 214.34461 * 25 23 21 28 28 H 1.48493 * 109.47133 * 334.34945 * 25 23 21 29 29 C 1.46926 * 118.76364 * 53.55506 * 20 19 18 30 30 H 1.09001 * 109.47248 * 300.00532 * 1 2 3 31 31 H 1.09006 * 109.46876 * 59.99754 * 1 2 3 32 32 H 1.08999 * 109.47300 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99949 * 94.99688 * 4 2 1 34 34 H 1.09001 * 109.47100 * 300.00054 * 7 5 4 35 35 H 1.08998 * 109.47434 * 60.00070 * 7 5 4 36 36 H 0.96700 * 113.99516 * 89.99528 * 10 9 8 37 37 H 0.96698 * 114.00330 * 270.02338 * 14 13 12 38 38 H 1.09000 * 109.46228 * 58.65993 * 17 15 2 39 39 H 1.08999 * 109.44547 * 298.68897 * 17 15 2 40 40 H 1.08994 * 109.49869 * 181.31616 * 18 17 15 41 41 H 1.09006 * 109.49497 * 301.37538 * 18 17 15 42 42 H 1.09001 * 109.58408 * 65.17035 * 19 18 17 43 43 H 1.08994 * 109.58759 * 185.59322 * 19 18 17 44 44 H 0.96991 * 120.00262 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.58515 * 186.62141 * 29 20 19 46 46 H 1.08999 * 109.58664 * 66.20103 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6487 -0.7287 3.5878 8 7 2.6987 0.2128 4.7090 9 6 3.7650 0.9889 5.0563 10 8 4.9642 1.0247 4.4237 11 7 3.4271 1.6957 6.1050 12 7 2.1106 1.3588 6.4467 13 6 1.6891 0.4619 5.5914 14 8 0.4633 -0.1185 5.5843 15 6 2.0399 -0.7214 -1.2492 16 1 3.1262 -0.8014 -1.2057 17 6 1.6355 0.0686 -2.4961 18 6 2.1733 -0.6348 -3.7443 19 6 1.5618 -2.0361 -3.8402 20 7 1.8218 -2.7524 -2.5839 21 6 2.4212 -3.9836 -2.5945 22 1 3.0037 -4.3081 -1.7449 23 6 2.2802 -4.8147 -3.6974 24 7 1.3205 -4.5926 -4.5704 25 14 3.4526 -6.2482 -3.9427 26 1 2.8561 -7.4797 -3.3657 27 1 3.6932 -6.4481 -5.3943 28 1 4.7402 -5.9564 -3.2630 29 6 1.4263 -2.1233 -1.3164 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 1.9758 -1.5505 3.8326 35 1 3.6478 -1.1213 3.3987 36 1 5.0148 1.6790 3.7134 37 1 0.4090 -0.9295 6.1082 38 1 2.0506 1.0748 -2.4390 39 1 0.5485 0.1267 -2.5520 40 1 1.9049 -0.0594 -4.6302 41 1 3.2583 -0.7151 -3.6776 42 1 0.4864 -1.9554 -3.9985 43 1 2.0159 -2.5769 -4.6705 44 1 1.2222 -5.1731 -5.3412 45 1 1.7908 -2.7222 -0.4818 46 1 0.3399 -2.0494 -1.2686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690505272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:13 Heat of formation + Delta-G solvation = -32.939087 kcal Electronic energy + Delta-G solvation = -30269.110271 eV Core-core repulsion = 26003.064890 eV Total energy + Delta-G solvation = -4266.045381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.38234 -41.09994 -39.51709 -39.15503 -38.06165 -36.76045 -35.36687 -34.70627 -32.64797 -32.25103 -30.70052 -29.74634 -28.78256 -27.20103 -25.26452 -23.90811 -23.87469 -23.23855 -22.37388 -21.49271 -20.27268 -19.85636 -19.65836 -18.79832 -18.44252 -17.89974 -17.32387 -16.79953 -16.76867 -16.40891 -16.23405 -15.86621 -15.67782 -15.25184 -15.01827 -14.71395 -14.51221 -14.14085 -13.98211 -13.93523 -13.85287 -13.41160 -13.36008 -13.26455 -13.04367 -12.78060 -12.68200 -12.54793 -12.27853 -12.04390 -11.94935 -11.83993 -11.65087 -11.60697 -11.49791 -11.26749 -11.05544 -10.73407 -10.55448 -10.49414 -10.16312 -8.63218 -7.84257 -5.28490 0.39305 0.72041 1.12415 1.41737 1.47874 1.51223 1.59261 2.03082 2.21411 2.53229 2.83977 3.31304 3.47066 3.51674 3.62650 3.92662 3.99914 4.05409 4.06510 4.15367 4.25601 4.34847 4.41237 4.47620 4.65402 4.66688 4.71501 4.85682 4.89442 4.97289 5.04091 5.14765 5.20756 5.21910 5.30242 5.36388 5.44229 5.50448 5.60657 5.70391 5.81027 6.19518 6.37467 6.41955 6.46897 6.77549 7.07712 7.17933 7.90551 8.41858 9.21982 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.002565 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.121967 B =10913.814472 C =11499.203935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.078 0.922 4 N -0.703 5.703 5 C 0.500 3.500 6 O -0.575 6.575 7 C 0.081 3.919 8 N -0.493 5.493 9 C 0.424 3.576 10 O -0.434 6.434 11 N -0.338 5.338 12 N -0.341 5.341 13 C 0.428 3.572 14 O -0.435 6.435 15 C -0.096 4.096 16 H 0.071 0.929 17 C -0.099 4.099 18 C -0.131 4.131 19 C 0.174 3.826 20 N -0.609 5.609 21 C -0.256 4.256 22 H 0.074 0.926 23 C -0.053 4.053 24 N -0.936 5.936 25 Si 0.961 3.039 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C 0.150 3.850 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.432 0.568 37 H 0.437 0.563 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.050 0.950 42 H -0.006 1.006 43 H 0.049 0.951 44 H 0.247 0.753 45 H 0.061 0.939 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 6.464 14.795 16.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.096 0.904 4 N -0.356 5.356 5 C 0.286 3.714 6 O -0.455 6.455 7 C -0.045 4.045 8 N -0.213 5.213 9 C 0.112 3.888 10 O -0.237 6.237 11 N -0.182 5.182 12 N -0.185 5.185 13 C 0.117 3.883 14 O -0.239 6.239 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.137 4.137 18 C -0.170 4.170 19 C 0.048 3.952 20 N -0.332 5.332 21 C -0.387 4.387 22 H 0.092 0.908 23 C -0.248 4.248 24 N -0.583 5.583 25 Si 0.790 3.210 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.191 1.191 29 C 0.024 3.976 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.294 0.706 37 H 0.300 0.700 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.012 0.988 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.711 8.200 15.913 18.105 hybrid contribution 0.209 -2.276 -2.029 3.056 sum 2.920 5.924 13.883 15.374 Atomic orbital electron populations 1.22198 0.95170 1.02525 1.01885 1.20810 0.94131 0.96256 0.83066 0.90370 1.45997 1.65821 1.14911 1.08822 1.21057 0.77681 0.87247 0.85434 1.90778 1.51638 1.17756 1.85303 1.22091 1.09132 0.91353 0.81903 1.46632 1.11328 1.36945 1.26396 1.21320 0.82953 0.91436 0.93042 1.84878 1.21522 1.63789 1.53509 1.78232 1.04383 1.20900 1.14678 1.78236 1.02627 1.15723 1.21946 1.21301 0.83287 0.94917 0.88829 1.84989 1.18335 1.46259 1.74346 1.21732 1.00484 0.96118 0.93317 0.91012 1.21417 1.00716 0.98161 0.93409 1.22004 0.99984 0.96963 0.98062 1.20599 0.95111 0.90225 0.89293 1.44289 1.70128 1.17193 1.01574 1.19539 1.23158 0.92711 1.03257 0.90842 1.25751 0.98895 1.00378 0.99757 1.70189 1.32142 1.40882 1.15066 0.85356 0.79567 0.79646 0.76433 1.21414 1.22612 1.19145 1.21153 0.96169 0.91909 0.88324 0.93416 0.91158 0.91762 0.74682 0.81810 0.82004 0.70591 0.69992 0.90962 0.92114 0.91667 0.93105 0.98827 0.93291 0.94353 0.92034 0.96073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.76 71.98 0.63 -3.02 16 2 C 0.16 3.57 2.35 44.99 0.11 3.67 16 3 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 4 N -0.70 -11.87 5.01 -442.53 -2.22 -14.09 16 5 C 0.50 8.90 7.86 87.66 0.69 9.59 16 6 O -0.58 -15.79 16.09 -3.05 -0.05 -15.84 16 7 C 0.08 0.80 6.49 85.63 0.56 1.36 16 8 N -0.49 -8.52 2.25 -759.27 -1.71 -10.23 16 9 C 0.42 8.81 9.15 179.72 1.65 10.45 16 10 O -0.43 -6.29 13.57 -89.48 -1.21 -7.51 16 11 N -0.34 -9.36 12.72 -173.66 -2.21 -11.57 16 12 N -0.34 -9.41 12.72 -173.65 -2.21 -11.62 16 13 C 0.43 8.79 9.15 179.71 1.65 10.43 16 14 O -0.44 -6.07 13.58 -89.44 -1.21 -7.29 16 15 C -0.10 -2.53 2.27 -10.72 -0.02 -2.55 16 16 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 17 C -0.10 -2.73 4.89 30.62 0.15 -2.58 16 18 C -0.13 -4.45 6.08 30.67 0.19 -4.26 16 19 C 0.17 7.81 5.31 86.36 0.46 8.26 16 20 N -0.61 -27.29 3.00 -699.09 -2.09 -29.38 16 21 C -0.26 -12.79 9.58 84.03 0.81 -11.98 16 22 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 23 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 24 N -0.94 -53.16 11.19 21.65 0.24 -52.92 16 25 Si 0.96 42.19 29.59 68.60 2.03 44.22 16 26 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 C 0.15 4.99 5.26 86.36 0.45 5.45 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.59 6.60 -2.38 -0.02 1.58 16 32 H 0.06 1.51 6.23 -2.39 -0.01 1.49 16 33 H 0.42 5.42 7.28 -92.71 -0.68 4.75 16 34 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.43 2.96 9.06 -74.06 -0.67 2.29 16 37 H 0.44 0.43 9.06 -74.06 -0.67 -0.24 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.69 6.63 -2.39 -0.02 1.68 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.05 2.56 6.04 -2.39 -0.01 2.54 16 44 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 45 H 0.06 1.84 6.75 -2.39 -0.02 1.82 16 46 H 0.02 0.75 6.06 -2.39 -0.01 0.73 16 Total: -1.00 -80.63 375.74 -3.88 -84.51 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.96 Total: 9.26 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.72 Total: 22.46 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -10.19 Total: -129.81 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -2.48 Total: -30.64 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -80.63 -3.88 -84.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690505272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.566 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds