Wall clock time and date at job start Tue Mar 31 2020 23:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46814 * 2 1 4 4 N 1.46498 * 109.46805 * 240.00308 * 2 1 3 5 5 C 1.34773 * 120.00455 * 85.00256 * 4 2 1 6 6 N 1.34777 * 120.00114 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99323 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.46957 * 120.00311 * 2 1 3 9 9 O 1.21281 * 120.00128 * 109.37692 * 8 2 1 10 10 N 1.34781 * 119.99677 * 289.37323 * 8 2 1 11 11 C 1.47857 * 126.93044 * 355.87977 * 10 8 2 12 12 C 1.56015 * 105.11650 * 181.88308 * 11 10 8 13 13 H 1.08997 * 116.26068 * 158.84802 * 12 11 10 14 14 C 1.57086 * 99.59676 * 32.80837 * 12 11 10 15 15 C 1.49516 * 126.87946 * 175.85724 * 10 8 2 16 16 H 1.08998 * 116.26893 * 16.94112 * 15 10 8 17 17 C 1.56010 * 104.05617 * 246.92372 * 15 10 8 18 18 N 1.48452 * 105.07213 * 288.87021 * 17 15 10 19 19 C 1.46901 * 111.04568 * 122.57067 * 18 17 15 20 20 C 1.50705 * 109.47000 * 183.67915 * 19 18 17 21 21 O 1.21293 * 119.99784 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99663 * 179.97438 * 20 19 18 23 23 C 1.37103 * 119.99935 * 179.97438 * 22 20 19 24 24 H 1.07998 * 119.99745 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00055 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99870 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00073 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46929 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47450 * 119.99382 * 27 25 23 30 30 H 1.48501 * 109.47160 * 239.99867 * 27 25 23 31 31 H 1.09005 * 109.47086 * 296.36622 * 1 2 3 32 32 H 1.09001 * 109.47508 * 56.36456 * 1 2 3 33 33 H 1.09001 * 109.47686 * 176.36790 * 1 2 3 34 34 H 0.97006 * 119.99848 * 264.99842 * 4 2 1 35 35 H 0.96997 * 119.99958 * 359.97438 * 6 5 4 36 36 H 0.97005 * 119.99689 * 179.97438 * 6 5 4 37 37 H 1.08999 * 110.31175 * 62.97814 * 11 10 8 38 38 H 1.09000 * 110.40258 * 300.84220 * 11 10 8 39 39 H 1.09000 * 112.35992 * 64.33284 * 14 12 11 40 40 H 1.08997 * 112.35987 * 191.65748 * 14 12 11 41 41 H 1.08997 * 110.32087 * 47.82423 * 17 15 10 42 42 H 1.09003 * 110.32084 * 170.03147 * 17 15 10 43 43 H 1.09000 * 109.47302 * 303.67668 * 19 18 17 44 44 H 1.08999 * 109.46914 * 63.67607 * 19 18 17 45 45 H 0.97004 * 120.00366 * 359.97438 * 22 20 19 46 46 H 0.97004 * 119.99629 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 7 2.5967 -0.6535 -3.4575 7 8 1.8575 1.1614 -2.4117 8 6 2.0323 -0.7105 1.2304 9 8 2.5630 -1.7963 1.1295 10 7 1.8918 -0.1391 2.4430 11 6 1.3502 1.2056 2.7341 12 6 1.4648 1.3641 4.2819 13 1 1.4586 2.3849 4.6640 14 6 2.7709 0.5286 4.5347 15 6 2.2523 -0.7384 3.7645 16 1 2.9214 -1.5984 3.7378 17 6 0.8792 -0.9353 4.4784 18 7 0.4225 0.4348 4.8216 19 6 -0.8918 0.7168 4.2289 20 6 -1.2798 2.1431 4.5227 21 8 -0.5350 2.8545 5.1633 22 7 -2.4543 2.6280 4.0736 23 6 -2.8076 3.9254 4.3413 24 1 -2.1444 4.5589 4.9117 25 6 -4.0188 4.4252 3.8788 26 7 -4.8254 3.6545 3.1844 27 14 -4.4998 6.1931 4.2429 28 1 -3.4264 6.8449 5.0356 29 1 -4.6884 6.9278 2.9663 30 1 -5.7670 6.2120 5.0169 31 1 -0.3633 0.4564 0.9208 32 1 -0.3634 0.5692 -0.8556 33 1 -0.3634 -1.0256 -0.0651 34 1 2.2490 -1.6318 -1.1527 35 1 2.8280 -1.5944 -3.4138 36 1 2.6890 -0.1696 -4.2932 37 1 0.3072 1.2687 2.4236 38 1 1.9412 1.9705 2.2305 39 1 3.6457 0.9730 4.0601 40 1 2.9381 0.3307 5.5934 41 1 0.1682 -1.4149 3.8057 42 1 1.0050 -1.5293 5.3837 43 1 -0.8432 0.5683 3.1501 44 1 -1.6348 0.0428 4.6553 45 1 -3.0498 2.0591 3.5610 46 1 -5.6708 4.0036 2.8612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692362765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:03 Heat of formation + Delta-G solvation = -46.053888 kcal Electronic energy + Delta-G solvation = -30917.693387 eV Core-core repulsion = 26651.079306 eV Total energy + Delta-G solvation = -4266.614081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44100 -40.20956 -38.84015 -37.85636 -35.12980 -34.28168 -33.96693 -33.63386 -31.64593 -31.15055 -29.83257 -29.78637 -26.65028 -25.60868 -24.51710 -23.86315 -21.90435 -20.86881 -20.61508 -19.47361 -19.13052 -18.55950 -17.91556 -17.57219 -17.03809 -16.58731 -16.04476 -15.78808 -15.36285 -15.29419 -14.97354 -14.61400 -14.54446 -14.16211 -13.88976 -13.85022 -13.44412 -13.18023 -12.84447 -12.77487 -12.47601 -12.33430 -12.10264 -11.89918 -11.81090 -11.59408 -11.46493 -11.38462 -11.24029 -11.05071 -10.91925 -10.53415 -10.36621 -10.26399 -10.07711 -9.94170 -9.54620 -9.34179 -8.84630 -8.44015 -8.06358 -7.97753 -6.45989 -3.86989 2.30112 2.35544 2.89002 3.01909 3.14148 3.25745 3.32054 3.80715 3.87019 4.11684 4.17380 4.22777 4.43203 4.49313 4.63829 4.89808 4.93197 4.93842 4.99948 5.11882 5.23578 5.34489 5.40355 5.48725 5.59626 5.61186 5.71000 5.72127 5.81942 5.85872 5.97141 6.00543 6.05840 6.18019 6.19381 6.34750 6.44309 6.65232 6.91057 7.09565 7.30825 7.51680 7.69777 7.85280 8.01042 8.38388 8.55233 9.13256 9.48244 9.98611 10.71459 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.003475 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.303354 B = 8056.268866 C =10014.825774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.112 0.888 4 N -0.729 5.729 5 C 0.708 3.292 6 N -0.866 5.866 7 O -0.591 6.591 8 C 0.532 3.468 9 O -0.546 6.546 10 N -0.613 5.613 11 C 0.048 3.952 12 C 0.075 3.925 13 H 0.158 0.842 14 C -0.139 4.139 15 C 0.109 3.891 16 H 0.126 0.874 17 C 0.026 3.974 18 N -0.492 5.492 19 C 0.029 3.971 20 C 0.442 3.558 21 O -0.580 6.580 22 N -0.560 5.560 23 C -0.299 4.299 24 H 0.105 0.895 25 C 0.024 3.976 26 N -0.899 5.899 27 Si 0.929 3.071 28 H -0.267 1.267 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.397 0.603 36 H 0.415 0.585 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -12.636 -7.323 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.130 0.870 4 N -0.387 5.387 5 C 0.406 3.594 6 N -0.434 5.434 7 O -0.469 6.469 8 C 0.320 3.680 9 O -0.424 6.424 10 N -0.348 5.348 11 C -0.076 4.076 12 C -0.033 4.033 13 H 0.175 0.825 14 C -0.177 4.177 15 C 0.007 3.993 16 H 0.144 0.856 17 C -0.103 4.103 18 N -0.216 5.216 19 C -0.102 4.102 20 C 0.227 3.773 21 O -0.465 6.465 22 N -0.196 5.196 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.178 4.178 26 N -0.540 5.540 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.225 0.775 36 H 0.248 0.752 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.334 -11.661 -6.429 18.844 hybrid contribution -0.605 -0.338 -1.529 1.678 sum 12.728 -11.999 -7.958 19.217 Atomic orbital electron populations 1.22177 0.92384 1.03207 1.04197 1.20534 0.95828 0.97585 0.82206 0.87000 1.44798 1.71484 1.14375 1.08042 1.15874 0.78031 0.84897 0.80580 1.42929 1.73552 1.14960 1.12003 1.91003 1.57038 1.14268 1.84590 1.20211 0.78506 0.85653 0.83594 1.90661 1.44526 1.21482 1.85749 1.49303 1.62305 1.17784 1.05363 1.23625 1.00382 0.83422 1.00121 1.24904 0.89905 0.99843 0.88649 0.82517 1.24025 0.97447 0.94938 1.01336 1.24158 0.96800 0.97683 0.80686 0.85576 1.23766 0.94950 0.92065 0.99488 1.64762 1.01034 1.01058 1.54696 1.22245 0.92207 0.97956 0.97833 1.19610 0.83955 0.88171 0.85547 1.90467 1.52307 1.59832 1.43899 1.41872 1.16761 1.12895 1.48091 1.19739 1.02948 0.87702 1.32477 0.87755 1.25269 0.95866 1.00129 0.96571 1.69616 1.11319 1.36681 1.36408 0.85812 0.78581 0.81862 0.78171 1.19170 1.20731 1.20761 0.90728 0.90242 0.91758 0.75821 0.77499 0.75243 0.89352 0.90453 0.89995 0.88462 0.92124 0.89115 0.92949 0.89148 0.77517 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.41 37.16 0.35 -1.58 16 2 C 0.15 1.81 2.40 -69.08 -0.17 1.64 16 3 H 0.11 1.49 7.43 -51.93 -0.39 1.11 16 4 N -0.73 -7.96 5.01 -59.82 -0.30 -8.26 16 5 C 0.71 8.38 8.80 -86.92 -0.77 7.61 16 6 N -0.87 -6.13 8.88 27.63 0.25 -5.88 16 7 O -0.59 -9.65 16.84 5.29 0.09 -9.56 16 8 C 0.53 6.92 7.20 -10.98 -0.08 6.84 16 9 O -0.55 -8.04 16.18 5.56 0.09 -7.95 16 10 N -0.61 -7.56 2.95 -156.63 -0.46 -8.02 16 11 C 0.05 0.63 5.23 -1.68 -0.01 0.62 16 12 C 0.07 1.06 4.15 -62.31 -0.26 0.81 16 13 H 0.16 2.64 6.43 -51.93 -0.33 2.30 16 14 C -0.14 -1.54 6.80 -22.30 -0.15 -1.69 16 15 C 0.11 1.23 5.25 -62.43 -0.33 0.91 16 16 H 0.13 1.32 8.05 -51.93 -0.42 0.91 16 17 C 0.03 0.31 6.29 -1.35 -0.01 0.31 16 18 N -0.49 -7.37 5.16 -218.03 -1.12 -8.49 16 19 C 0.03 0.48 4.66 -4.97 -0.02 0.46 16 20 C 0.44 9.60 7.45 -10.99 -0.08 9.52 16 21 O -0.58 -14.22 13.61 5.55 0.08 -14.15 16 22 N -0.56 -13.41 5.29 -10.96 -0.06 -13.46 16 23 C -0.30 -7.98 9.68 -14.93 -0.14 -8.12 16 24 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 27 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 31 H 0.07 0.92 5.61 -51.93 -0.29 0.63 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 3.85 7.73 -40.82 -0.32 3.53 16 35 H 0.40 1.63 8.84 -40.82 -0.36 1.27 16 36 H 0.42 2.47 8.93 -40.82 -0.36 2.10 16 37 H 0.09 1.27 3.36 -51.93 -0.17 1.10 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.74 7.63 -51.93 -0.40 0.35 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.80 5.37 -51.93 -0.28 0.52 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -33.38 370.41 -8.04 -41.41 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -6.11 Total: 18.52 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -1.76 Total: 17.83 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -0.97 Total: -67.23 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: 0.25 Total: -31.66 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.38 -8.04 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds