Wall clock time and date at job start Tue Mar 31 2020 23:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46814 * 2 1 4 4 N 1.46498 * 109.46805 * 240.00308 * 2 1 3 5 5 C 1.34773 * 120.00455 * 85.00256 * 4 2 1 6 6 N 1.34777 * 120.00114 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99323 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.46957 * 120.00311 * 2 1 3 9 9 O 1.21281 * 120.00128 * 109.37692 * 8 2 1 10 10 N 1.34781 * 119.99677 * 289.37323 * 8 2 1 11 11 C 1.47857 * 126.93044 * 355.87977 * 10 8 2 12 12 C 1.56015 * 105.11650 * 181.88308 * 11 10 8 13 13 H 1.08997 * 116.26068 * 158.84802 * 12 11 10 14 14 C 1.57086 * 99.59676 * 32.80837 * 12 11 10 15 15 C 1.49516 * 126.87946 * 175.85724 * 10 8 2 16 16 H 1.08998 * 116.26893 * 16.94112 * 15 10 8 17 17 C 1.56010 * 104.05617 * 246.92372 * 15 10 8 18 18 N 1.48452 * 105.07213 * 288.87021 * 17 15 10 19 19 C 1.46901 * 111.04568 * 122.57067 * 18 17 15 20 20 C 1.50705 * 109.47000 * 183.67915 * 19 18 17 21 21 O 1.21293 * 119.99784 * 359.97438 * 20 19 18 22 22 N 1.34771 * 119.99663 * 179.97438 * 20 19 18 23 23 C 1.37103 * 119.99935 * 179.97438 * 22 20 19 24 24 H 1.07998 * 119.99745 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00055 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99870 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00073 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46929 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47450 * 119.99382 * 27 25 23 30 30 H 1.48501 * 109.47160 * 239.99867 * 27 25 23 31 31 H 1.09005 * 109.47086 * 296.36622 * 1 2 3 32 32 H 1.09001 * 109.47508 * 56.36456 * 1 2 3 33 33 H 1.09001 * 109.47686 * 176.36790 * 1 2 3 34 34 H 0.97006 * 119.99848 * 264.99842 * 4 2 1 35 35 H 0.96997 * 119.99958 * 359.97438 * 6 5 4 36 36 H 0.97005 * 119.99689 * 179.97438 * 6 5 4 37 37 H 1.08999 * 110.31175 * 62.97814 * 11 10 8 38 38 H 1.09000 * 110.40258 * 300.84220 * 11 10 8 39 39 H 1.09000 * 112.35992 * 64.33284 * 14 12 11 40 40 H 1.08997 * 112.35987 * 191.65748 * 14 12 11 41 41 H 1.08997 * 110.32087 * 47.82423 * 17 15 10 42 42 H 1.09003 * 110.32084 * 170.03147 * 17 15 10 43 43 H 1.09000 * 109.47302 * 303.67668 * 19 18 17 44 44 H 1.08999 * 109.46914 * 63.67607 * 19 18 17 45 45 H 0.97004 * 120.00366 * 359.97438 * 22 20 19 46 46 H 0.97004 * 119.99629 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 7 2.5967 -0.6535 -3.4575 7 8 1.8575 1.1614 -2.4117 8 6 2.0323 -0.7105 1.2304 9 8 2.5630 -1.7963 1.1295 10 7 1.8918 -0.1391 2.4430 11 6 1.3502 1.2056 2.7341 12 6 1.4648 1.3641 4.2819 13 1 1.4586 2.3849 4.6640 14 6 2.7709 0.5286 4.5347 15 6 2.2523 -0.7384 3.7645 16 1 2.9214 -1.5984 3.7378 17 6 0.8792 -0.9353 4.4784 18 7 0.4225 0.4348 4.8216 19 6 -0.8918 0.7168 4.2289 20 6 -1.2798 2.1431 4.5227 21 8 -0.5350 2.8545 5.1633 22 7 -2.4543 2.6280 4.0736 23 6 -2.8076 3.9254 4.3413 24 1 -2.1444 4.5589 4.9117 25 6 -4.0188 4.4252 3.8788 26 7 -4.8254 3.6545 3.1844 27 14 -4.4998 6.1931 4.2429 28 1 -3.4264 6.8449 5.0356 29 1 -4.6884 6.9278 2.9663 30 1 -5.7670 6.2120 5.0169 31 1 -0.3633 0.4564 0.9208 32 1 -0.3634 0.5692 -0.8556 33 1 -0.3634 -1.0256 -0.0651 34 1 2.2490 -1.6318 -1.1527 35 1 2.8280 -1.5944 -3.4138 36 1 2.6890 -0.1696 -4.2932 37 1 0.3072 1.2687 2.4236 38 1 1.9412 1.9705 2.2305 39 1 3.6457 0.9730 4.0601 40 1 2.9381 0.3307 5.5934 41 1 0.1682 -1.4149 3.8057 42 1 1.0050 -1.5293 5.3837 43 1 -0.8432 0.5683 3.1501 44 1 -1.6348 0.0428 4.6553 45 1 -3.0498 2.0591 3.5610 46 1 -5.6708 4.0036 2.8612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692362765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:02 Heat of formation + Delta-G solvation = -75.618551 kcal Electronic energy + Delta-G solvation = -30918.975407 eV Core-core repulsion = 26651.079306 eV Total energy + Delta-G solvation = -4267.896101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.51374 -41.19887 -40.09249 -39.40584 -36.13410 -36.00172 -35.08453 -34.71653 -33.29258 -32.51822 -30.83960 -30.81641 -28.15210 -26.62968 -26.08572 -25.04875 -22.84568 -21.92157 -21.70176 -20.99929 -20.24539 -19.82335 -19.44320 -18.45965 -18.15112 -17.66767 -17.57015 -16.86821 -16.59099 -16.39442 -16.28179 -15.86434 -15.78799 -15.60646 -15.28142 -15.02622 -14.81695 -14.28339 -14.11167 -13.85500 -13.74884 -13.51707 -13.37876 -13.18272 -12.99544 -12.96887 -12.80392 -12.59718 -12.44189 -12.36302 -12.24787 -12.09263 -11.98726 -11.59779 -11.44854 -11.13234 -10.79163 -10.22606 -10.19370 -9.97119 -9.89411 -9.21015 -8.43903 -5.91476 1.29263 1.37494 1.38629 1.44070 1.57218 1.97528 2.06781 2.09579 2.29829 2.72911 3.09370 3.23613 3.26644 3.40429 3.48715 3.57043 3.75564 3.90680 3.93665 3.95967 4.00248 4.28383 4.35301 4.39952 4.51848 4.55490 4.59186 4.62614 4.71590 4.77308 4.91233 4.98656 5.03173 5.10187 5.16125 5.25914 5.45079 5.77142 5.77396 5.86331 5.97130 6.08586 6.27143 6.62733 6.80074 6.97345 7.16326 7.55318 7.59502 8.14021 8.73570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.003475 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.303354 B = 8056.268866 C =10014.825774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 H 0.099 0.901 4 N -0.721 5.721 5 C 0.704 3.296 6 N -0.843 5.843 7 O -0.640 6.640 8 C 0.537 3.463 9 O -0.559 6.559 10 N -0.609 5.609 11 C 0.056 3.944 12 C 0.063 3.937 13 H 0.127 0.873 14 C -0.123 4.123 15 C 0.115 3.885 16 H 0.144 0.856 17 C 0.030 3.970 18 N -0.506 5.506 19 C 0.042 3.958 20 C 0.446 3.554 21 O -0.609 6.609 22 N -0.573 5.573 23 C -0.325 4.325 24 H 0.082 0.918 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.988 3.012 28 H -0.271 1.271 29 H -0.274 1.274 30 H -0.274 1.274 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.415 0.585 36 H 0.423 0.577 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.105 0.895 45 H 0.394 0.606 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 -14.328 -7.619 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.116 0.884 4 N -0.379 5.379 5 C 0.401 3.599 6 N -0.412 5.412 7 O -0.522 6.522 8 C 0.326 3.674 9 O -0.439 6.439 10 N -0.343 5.343 11 C -0.068 4.068 12 C -0.045 4.045 13 H 0.144 0.856 14 C -0.161 4.161 15 C 0.013 3.987 16 H 0.162 0.838 17 C -0.098 4.098 18 N -0.230 5.230 19 C -0.090 4.090 20 C 0.233 3.767 21 O -0.495 6.495 22 N -0.211 5.211 23 C -0.455 4.455 24 H 0.100 0.900 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.813 3.187 28 H -0.196 1.196 29 H -0.200 1.200 30 H -0.199 1.199 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.246 0.754 36 H 0.257 0.743 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.228 0.772 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.235 -13.427 -6.743 20.697 hybrid contribution -0.790 0.135 -1.424 1.634 sum 13.445 -13.292 -8.167 20.595 Atomic orbital electron populations 1.22093 0.92242 1.03555 1.03345 1.20423 0.95887 0.97038 0.82633 0.88359 1.44662 1.71178 1.14624 1.07484 1.16087 0.77948 0.84393 0.81440 1.42717 1.71789 1.15781 1.10926 1.90974 1.59271 1.16544 1.85407 1.20197 0.78169 0.85349 0.83725 1.90655 1.45253 1.22023 1.85937 1.49289 1.61897 1.17332 1.05774 1.23441 0.99716 0.84137 0.99517 1.24718 0.91733 0.98961 0.89104 0.85589 1.23968 0.95998 0.93924 1.02219 1.24295 0.96659 0.98090 0.79686 0.83831 1.23827 0.95155 0.90235 1.00591 1.64769 1.00383 1.02823 1.55044 1.22096 0.93710 0.94094 0.99063 1.20525 0.82576 0.90006 0.83593 1.90458 1.52897 1.61396 1.44703 1.41932 1.17758 1.12321 1.49048 1.19675 1.03394 0.88985 1.33457 0.89995 1.25980 0.95474 1.03633 0.96192 1.69678 1.11620 1.38035 1.36871 0.84926 0.78142 0.77517 0.78133 1.19566 1.19971 1.19907 0.91247 0.91464 0.90663 0.74735 0.75433 0.74316 0.90712 0.90127 0.88940 0.87313 0.91991 0.87080 0.91379 0.87724 0.77240 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.41 71.98 0.68 -2.94 16 2 C 0.15 3.57 2.40 44.25 0.11 3.68 16 3 H 0.10 2.65 7.43 -2.39 -0.02 2.63 16 4 N -0.72 -14.89 5.01 -461.43 -2.31 -17.20 16 5 C 0.70 16.03 8.80 179.06 1.58 17.61 16 6 N -0.84 -10.46 8.88 -184.75 -1.64 -12.10 16 7 O -0.64 -21.01 16.84 -3.99 -0.07 -21.08 16 8 C 0.54 13.05 7.20 87.66 0.63 13.69 16 9 O -0.56 -15.15 16.18 -3.03 -0.05 -15.20 16 10 N -0.61 -13.96 2.95 -767.85 -2.26 -16.22 16 11 C 0.06 1.44 5.23 87.16 0.46 1.90 16 12 C 0.06 1.76 4.15 46.85 0.19 1.95 16 13 H 0.13 4.38 6.43 -2.39 -0.02 4.36 16 14 C -0.12 -2.46 6.80 33.46 0.23 -2.23 16 15 C 0.11 2.26 5.25 46.88 0.25 2.51 16 16 H 0.14 2.46 8.05 -2.39 -0.02 2.45 16 17 C 0.03 0.64 6.29 87.05 0.55 1.19 16 18 N -0.51 -14.52 5.16 -843.71 -4.35 -18.87 16 19 C 0.04 1.34 4.66 85.56 0.40 1.74 16 20 C 0.45 19.71 7.45 87.66 0.65 20.36 16 21 O -0.61 -30.68 13.61 -3.07 -0.04 -30.73 16 22 N -0.57 -28.10 5.29 -306.98 -1.62 -29.73 16 23 C -0.33 -17.83 9.68 84.04 0.81 -17.02 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 26 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 27 Si 0.99 42.47 29.55 68.60 2.03 44.49 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 31 H 0.07 1.69 5.61 -2.38 -0.01 1.68 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.41 7.07 7.73 -92.70 -0.72 6.35 16 35 H 0.41 2.40 8.84 -92.71 -0.82 1.58 16 36 H 0.42 4.33 8.93 -92.70 -0.83 3.50 16 37 H 0.08 2.15 3.36 -2.39 -0.01 2.15 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.33 7.63 -2.39 -0.02 1.32 16 42 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 2.02 5.37 -2.39 -0.01 2.00 16 44 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.39 18.62 7.90 -92.71 -0.73 17.88 16 46 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -72.80 370.41 -5.05 -77.85 By element: Atomic # 1 Polarization: 47.35 SS G_CDS: -2.01 Total: 45.34 kcal Atomic # 6 Polarization: 35.22 SS G_CDS: 6.99 Total: 42.21 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -11.91 Total: -142.89 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -0.16 Total: -67.01 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.80 -5.05 -77.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.232 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds