Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.99803 * 2 1 4 4 C 1.54322 * 109.88250 * 238.90149 * 2 1 3 5 5 H 1.09001 * 110.87602 * 336.82327 * 4 2 1 6 6 N 1.46499 * 110.72244 * 100.02949 * 4 2 1 7 7 C 1.34772 * 120.00063 * 199.97467 * 6 4 2 8 8 O 1.21279 * 119.99932 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99691 * 179.97438 * 7 6 4 10 10 C 1.53004 * 109.46609 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46589 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46696 * 179.97438 * 11 10 9 13 13 C 1.36373 * 125.96569 * 90.00574 * 12 11 10 14 14 O 1.35628 * 125.98480 * 0.23235 * 13 12 11 15 15 N 1.30904 * 108.02333 * 179.97438 * 13 12 11 16 16 N 1.40116 * 107.94239 * 359.97438 * 15 13 12 17 17 C 1.30905 * 107.93815 * 0.02562 * 16 15 13 18 18 O 1.35633 * 125.98967 * 180.02562 * 17 16 15 19 19 C 1.55162 * 102.93970 * 218.39269 * 4 2 1 20 20 C 1.54905 * 101.58112 * 35.50271 * 19 4 2 21 21 N 1.47029 * 109.87919 * 121.09570 * 2 1 3 22 22 C 1.36941 * 125.64402 * 298.32247 * 21 2 1 23 23 H 1.08000 * 120.00350 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99425 * 180.02562 * 22 21 2 25 25 N 1.31621 * 120.00462 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99669 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47288 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46848 * 119.99923 * 26 24 22 29 29 H 1.48498 * 109.47441 * 239.99985 * 26 24 22 30 30 H 1.09003 * 109.47193 * 181.09735 * 1 2 3 31 31 H 1.08993 * 109.47303 * 301.10103 * 1 2 3 32 32 H 1.09008 * 109.47072 * 61.10004 * 1 2 3 33 33 H 0.96996 * 119.99509 * 19.97006 * 6 4 2 34 34 H 1.08992 * 109.47520 * 60.00250 * 9 7 6 35 35 H 1.09001 * 109.47039 * 299.99620 * 9 7 6 36 36 H 1.09001 * 109.47082 * 60.00124 * 10 9 7 37 37 H 1.09001 * 109.47006 * 299.99512 * 10 9 7 38 38 H 1.09001 * 109.47188 * 60.00335 * 11 10 9 39 39 H 1.08994 * 109.47236 * 299.99958 * 11 10 9 40 40 H 0.96699 * 114.00092 * 269.72304 * 14 13 12 41 41 H 0.96701 * 113.99451 * 89.96765 * 18 17 16 42 42 H 1.09008 * 111.00159 * 153.57638 * 19 4 2 43 43 H 1.09001 * 110.99946 * 277.38908 * 19 4 2 44 44 H 1.09001 * 110.37060 * 81.83350 * 20 19 4 45 45 H 1.09002 * 110.36206 * 204.04117 * 20 19 4 46 46 H 0.96990 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6211 6 7 2.4555 0.1959 -2.2875 7 6 2.5560 -0.2162 -3.5667 8 8 2.3142 -1.3696 -3.8530 9 6 2.9677 0.7567 -4.6416 10 6 3.0030 0.0391 -5.9924 11 6 3.4203 1.0269 -7.0838 12 7 3.4548 0.3397 -8.3772 13 6 2.4147 0.2263 -9.2519 14 8 1.1689 0.7337 -9.0787 15 7 2.8310 -0.4533 -10.2903 16 7 4.1755 -0.7855 -10.0780 17 6 4.5329 -0.2976 -8.9170 18 8 5.7605 -0.4060 -8.3507 19 6 3.2876 -1.5143 -0.6922 20 6 2.8144 -1.8794 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.8048 -0.3556 2.4863 23 1 1.2140 0.5202 2.7109 24 6 2.3359 -1.1178 3.5177 25 7 3.0555 -2.1854 3.2440 26 14 2.0294 -0.6284 5.2942 27 1 1.1965 0.6005 5.3325 28 1 1.3201 -1.7286 5.9954 29 1 3.3274 -0.3683 5.9671 30 1 -0.3634 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8799 32 1 -0.3634 0.4967 -0.8998 33 1 2.6485 1.1185 -2.0585 34 1 3.9574 1.1523 -4.4140 35 1 2.2499 1.5759 -4.6844 36 1 2.0130 -0.3562 -6.2199 37 1 3.7206 -0.7804 -5.9499 38 1 4.4102 1.4226 -6.8565 39 1 2.7026 1.8460 -7.1262 40 1 0.5560 0.1298 -8.6374 41 1 6.3640 0.3143 -8.5790 42 1 3.4852 -2.4112 -1.2794 43 1 4.1655 -0.8691 -0.6608 44 1 2.1885 -2.7715 0.7130 45 1 3.6715 -2.0357 1.3919 46 1 3.4263 -2.7181 3.9647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692372432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = -1.231043 kcal Electronic energy + Delta-G solvation = -29125.166259 eV Core-core repulsion = 24860.495842 eV Total energy + Delta-G solvation = -4264.670417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66410 -39.90074 -38.59912 -37.77835 -37.50760 -36.05082 -34.11912 -32.83256 -32.00667 -30.45476 -29.97875 -28.91116 -27.52486 -24.82429 -24.07097 -23.18503 -23.01778 -22.11267 -20.64391 -20.22190 -19.68125 -19.24009 -19.07345 -17.38001 -17.11038 -16.85007 -16.53730 -16.11684 -15.89903 -15.74703 -14.82138 -14.60972 -14.34114 -14.06243 -13.89721 -13.52739 -13.38565 -13.05462 -12.89662 -12.77818 -12.68823 -12.28756 -12.20879 -12.00960 -11.66624 -11.65310 -11.41597 -11.21194 -10.92511 -10.91325 -10.91063 -10.60822 -10.49732 -10.44023 -10.12554 -9.87160 -9.84345 -9.76781 -9.61490 -8.77280 -8.69459 -6.94700 -5.72072 -3.15380 1.10876 1.31313 1.82800 2.64126 2.81259 3.12528 3.34328 3.39106 3.41953 3.42691 3.93357 4.24996 4.40845 4.42742 4.62415 4.73455 4.79493 4.85528 4.93098 5.11175 5.20756 5.25761 5.35162 5.46202 5.53123 5.56536 5.68290 5.72912 5.73631 6.03402 6.16749 6.22133 6.26565 6.45562 6.51823 6.58715 6.63964 6.78576 6.88240 7.01982 7.44767 7.48670 7.56005 7.60692 7.78643 8.25966 8.29956 9.13812 9.74692 10.38080 11.31276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.001865 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.456271 B =15006.850660 C =15494.827744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.135 3.865 5 H 0.091 0.909 6 N -0.715 5.715 7 C 0.510 3.490 8 O -0.543 6.543 9 C -0.137 4.137 10 C -0.119 4.119 11 C 0.100 3.900 12 N -0.510 5.510 13 C 0.407 3.593 14 O -0.437 6.437 15 N -0.297 5.297 16 N -0.298 5.298 17 C 0.408 3.592 18 O -0.433 6.433 19 C -0.152 4.152 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.221 4.221 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.398 0.602 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.414 0.586 41 H 0.411 0.589 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.014 0.986 45 H 0.109 0.891 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 10.832 -20.824 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.030 3.970 5 H 0.109 0.891 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.420 6.420 9 C -0.178 4.178 10 C -0.158 4.158 11 C -0.023 4.023 12 N -0.230 5.230 13 C 0.097 3.903 14 O -0.237 6.237 15 N -0.141 5.141 16 N -0.142 5.142 17 C 0.098 3.902 18 O -0.233 6.233 19 C -0.192 4.192 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.032 0.968 45 H 0.127 0.873 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.625 9.183 -22.190 24.070 hybrid contribution -0.186 1.435 2.641 3.012 sum 1.439 10.619 -19.549 22.293 Atomic orbital electron populations 1.22247 0.97894 1.01468 0.99888 1.20982 0.92583 0.94735 0.86944 0.94693 1.22159 0.97631 0.90795 0.86393 0.89141 1.46097 1.69151 1.14068 1.07216 1.20415 0.77583 0.88977 0.83459 1.90724 1.49792 1.19295 1.82191 1.21549 1.04123 0.98817 0.93330 1.21667 1.04015 0.98198 0.91894 1.22042 1.04970 0.95530 0.79768 1.47150 1.11228 1.45558 1.19030 1.21325 0.84389 0.96733 0.87836 1.84918 1.14859 1.43037 1.80928 1.78377 1.02457 1.14690 1.18622 1.78380 1.03549 1.21870 1.10416 1.21338 0.83958 0.95046 0.89881 1.85008 1.16957 1.50619 1.70690 1.23389 0.96683 0.99344 0.99781 1.21950 0.97403 0.88392 0.89542 1.44498 1.59246 1.28220 1.00073 1.19060 1.27202 1.08213 0.80464 0.90386 1.24806 1.00328 0.97368 0.98130 1.69801 1.39078 1.17822 1.30127 0.86005 0.77365 0.77554 0.84576 1.20539 1.21740 1.21731 0.92915 0.92670 0.94399 0.76779 0.88422 0.88514 0.90585 0.89828 0.88306 0.87945 0.72662 0.73056 0.92017 0.92052 0.96766 0.87307 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.14 37.16 0.34 -2.39 16 2 C 0.16 2.94 3.48 -66.95 -0.23 2.71 16 3 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 4 C 0.13 2.28 2.76 -66.09 -0.18 2.10 16 5 H 0.09 1.68 7.41 -51.93 -0.38 1.29 16 6 N -0.72 -8.97 5.20 -52.03 -0.27 -9.24 16 7 C 0.51 6.16 7.83 -10.99 -0.09 6.08 16 8 O -0.54 -9.01 15.71 5.56 0.09 -8.92 16 9 C -0.14 -0.88 5.70 -27.88 -0.16 -1.04 16 10 C -0.12 -0.82 4.83 -26.73 -0.13 -0.95 16 11 C 0.10 0.45 6.01 -4.04 -0.02 0.43 16 12 N -0.51 -3.87 2.76 -120.05 -0.33 -4.21 16 13 C 0.41 3.69 9.15 -88.81 -0.81 2.88 16 14 O -0.44 -2.72 13.58 -18.58 -0.25 -2.97 16 15 N -0.30 -3.65 12.72 29.65 0.38 -3.27 16 16 N -0.30 -3.67 12.72 29.66 0.38 -3.29 16 17 C 0.41 3.73 9.15 -88.81 -0.81 2.91 16 18 O -0.43 -2.76 13.58 -18.60 -0.25 -3.02 16 19 C -0.15 -2.90 6.77 -24.58 -0.17 -3.07 16 20 C 0.15 3.61 5.89 -2.54 -0.01 3.59 16 21 N -0.60 -14.31 3.13 -162.58 -0.51 -14.82 16 22 C -0.22 -5.84 9.89 -15.06 -0.15 -5.99 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 25 N -0.92 -26.14 10.09 55.49 0.56 -25.58 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 32 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.40 3.90 8.31 -40.82 -0.34 3.56 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.41 0.71 9.06 45.56 0.41 1.13 16 41 H 0.41 0.25 9.06 45.56 0.41 0.67 16 42 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -37.34 387.49 -7.14 -44.48 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.21 Total: 1.71 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -2.53 Total: 6.89 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.20 Total: -60.40 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.42 Total: -14.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.34 -7.14 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692372432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.249 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds