Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.99803 * 2 1 4 4 C 1.54322 * 109.88250 * 238.90149 * 2 1 3 5 5 H 1.09001 * 110.87602 * 336.82327 * 4 2 1 6 6 N 1.46499 * 110.72244 * 100.02949 * 4 2 1 7 7 C 1.34772 * 120.00063 * 199.97467 * 6 4 2 8 8 O 1.21279 * 119.99932 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99691 * 179.97438 * 7 6 4 10 10 C 1.53004 * 109.46609 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46589 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46696 * 179.97438 * 11 10 9 13 13 C 1.36373 * 125.96569 * 90.00574 * 12 11 10 14 14 O 1.35628 * 125.98480 * 0.23235 * 13 12 11 15 15 N 1.30904 * 108.02333 * 179.97438 * 13 12 11 16 16 N 1.40116 * 107.94239 * 359.97438 * 15 13 12 17 17 C 1.30905 * 107.93815 * 0.02562 * 16 15 13 18 18 O 1.35633 * 125.98967 * 180.02562 * 17 16 15 19 19 C 1.55162 * 102.93970 * 218.39269 * 4 2 1 20 20 C 1.54905 * 101.58112 * 35.50271 * 19 4 2 21 21 N 1.47029 * 109.87919 * 121.09570 * 2 1 3 22 22 C 1.36941 * 125.64402 * 298.32247 * 21 2 1 23 23 H 1.08000 * 120.00350 * 0.02562 * 22 21 2 24 24 C 1.38811 * 119.99425 * 180.02562 * 22 21 2 25 25 N 1.31621 * 120.00462 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99669 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47288 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46848 * 119.99923 * 26 24 22 29 29 H 1.48498 * 109.47441 * 239.99985 * 26 24 22 30 30 H 1.09003 * 109.47193 * 181.09735 * 1 2 3 31 31 H 1.08993 * 109.47303 * 301.10103 * 1 2 3 32 32 H 1.09008 * 109.47072 * 61.10004 * 1 2 3 33 33 H 0.96996 * 119.99509 * 19.97006 * 6 4 2 34 34 H 1.08992 * 109.47520 * 60.00250 * 9 7 6 35 35 H 1.09001 * 109.47039 * 299.99620 * 9 7 6 36 36 H 1.09001 * 109.47082 * 60.00124 * 10 9 7 37 37 H 1.09001 * 109.47006 * 299.99512 * 10 9 7 38 38 H 1.09001 * 109.47188 * 60.00335 * 11 10 9 39 39 H 1.08994 * 109.47236 * 299.99958 * 11 10 9 40 40 H 0.96699 * 114.00092 * 269.72304 * 14 13 12 41 41 H 0.96701 * 113.99451 * 89.96765 * 18 17 16 42 42 H 1.09008 * 111.00159 * 153.57638 * 19 4 2 43 43 H 1.09001 * 110.99946 * 277.38908 * 19 4 2 44 44 H 1.09001 * 110.37060 * 81.83350 * 20 19 4 45 45 H 1.09002 * 110.36206 * 204.04117 * 20 19 4 46 46 H 0.96990 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3065 -1.4459 -1.6211 6 7 2.4555 0.1959 -2.2875 7 6 2.5560 -0.2162 -3.5667 8 8 2.3142 -1.3696 -3.8530 9 6 2.9677 0.7567 -4.6416 10 6 3.0030 0.0391 -5.9924 11 6 3.4203 1.0269 -7.0838 12 7 3.4548 0.3397 -8.3772 13 6 2.4147 0.2263 -9.2519 14 8 1.1689 0.7337 -9.0787 15 7 2.8310 -0.4533 -10.2903 16 7 4.1755 -0.7855 -10.0780 17 6 4.5329 -0.2976 -8.9170 18 8 5.7605 -0.4060 -8.3507 19 6 3.2876 -1.5143 -0.6922 20 6 2.8144 -1.8794 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.8048 -0.3556 2.4863 23 1 1.2140 0.5202 2.7109 24 6 2.3359 -1.1178 3.5177 25 7 3.0555 -2.1854 3.2440 26 14 2.0294 -0.6284 5.2942 27 1 1.1965 0.6005 5.3325 28 1 1.3201 -1.7286 5.9954 29 1 3.3274 -0.3683 5.9671 30 1 -0.3634 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8799 32 1 -0.3634 0.4967 -0.8998 33 1 2.6485 1.1185 -2.0585 34 1 3.9574 1.1523 -4.4140 35 1 2.2499 1.5759 -4.6844 36 1 2.0130 -0.3562 -6.2199 37 1 3.7206 -0.7804 -5.9499 38 1 4.4102 1.4226 -6.8565 39 1 2.7026 1.8460 -7.1262 40 1 0.5560 0.1298 -8.6374 41 1 6.3640 0.3143 -8.5790 42 1 3.4852 -2.4112 -1.2794 43 1 4.1655 -0.8691 -0.6608 44 1 2.1885 -2.7715 0.7130 45 1 3.6715 -2.0357 1.3919 46 1 3.4263 -2.7181 3.9647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692372432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = -36.060355 kcal Electronic energy + Delta-G solvation = -29126.676571 eV Core-core repulsion = 24860.495842 eV Total energy + Delta-G solvation = -4266.180729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.28655 -41.00812 -39.24679 -39.10694 -38.02437 -36.65331 -35.56660 -33.92242 -33.28825 -32.05716 -30.66595 -30.54944 -28.32568 -26.30831 -25.78955 -23.82758 -23.75944 -22.70211 -22.10733 -21.52422 -21.01129 -19.79176 -19.63411 -18.72265 -18.16377 -17.71222 -17.43064 -17.07620 -16.76307 -16.57153 -16.35044 -15.79008 -15.45461 -15.20095 -15.03393 -14.66752 -14.34753 -14.02430 -13.95541 -13.78260 -13.55510 -13.33958 -13.23424 -13.09074 -12.93602 -12.87715 -12.75592 -12.62466 -12.32834 -12.21263 -12.06718 -11.94317 -11.91758 -11.58028 -11.48776 -11.45651 -11.07869 -10.81524 -10.74161 -10.53942 -9.97814 -8.90565 -7.75601 -5.20677 0.53733 0.76389 1.16562 1.47933 1.48760 1.58603 1.72088 2.18565 2.24349 2.52092 2.93155 3.35241 3.53309 3.54188 3.71428 3.86202 3.91948 3.96071 4.09327 4.17897 4.21971 4.32995 4.41653 4.47092 4.49634 4.62339 4.67499 4.72673 4.74487 4.81376 4.96220 5.05156 5.06839 5.14234 5.20404 5.36354 5.38968 5.49880 5.59106 5.66298 5.79586 6.25904 6.29869 6.48386 6.65574 6.82555 7.10504 7.35730 7.78681 8.41972 9.26491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029176 B = 0.001865 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.456271 B =15006.850660 C =15494.827744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.057 0.943 4 C 0.153 3.847 5 H 0.073 0.927 6 N -0.705 5.705 7 C 0.506 3.494 8 O -0.593 6.593 9 C -0.123 4.123 10 C -0.114 4.114 11 C 0.103 3.897 12 N -0.504 5.504 13 C 0.417 3.583 14 O -0.434 6.434 15 N -0.345 5.345 16 N -0.347 5.347 17 C 0.418 3.582 18 O -0.436 6.436 19 C -0.138 4.138 20 C 0.156 3.844 21 N -0.614 5.614 22 C -0.223 4.223 23 H 0.088 0.912 24 C -0.072 4.072 25 N -0.952 5.952 26 Si 0.978 3.022 27 H -0.263 1.263 28 H -0.299 1.299 29 H -0.293 1.293 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.417 0.583 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.434 0.566 41 H 0.436 0.564 42 H 0.059 0.941 43 H 0.071 0.929 44 H -0.019 1.019 45 H 0.076 0.924 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 14.490 -21.432 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.075 0.925 4 C 0.047 3.953 5 H 0.091 0.909 6 N -0.357 5.357 7 C 0.294 3.706 8 O -0.474 6.474 9 C -0.163 4.163 10 C -0.153 4.153 11 C -0.019 4.019 12 N -0.224 5.224 13 C 0.106 3.894 14 O -0.237 6.237 15 N -0.190 5.190 16 N -0.191 5.191 17 C 0.107 3.893 18 O -0.239 6.239 19 C -0.177 4.177 20 C 0.030 3.970 21 N -0.340 5.340 22 C -0.352 4.352 23 H 0.105 0.895 24 C -0.264 4.264 25 N -0.602 5.602 26 Si 0.807 3.193 27 H -0.187 1.187 28 H -0.226 1.226 29 H -0.220 1.220 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.296 0.704 41 H 0.299 0.701 42 H 0.078 0.922 43 H 0.090 0.910 44 H -0.001 1.001 45 H 0.094 0.906 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.413 12.925 -22.816 26.260 hybrid contribution -0.145 0.303 2.832 2.852 sum 1.268 13.228 -19.984 23.999 Atomic orbital electron populations 1.22135 0.96613 1.00536 1.01357 1.21219 0.93456 0.95207 0.85682 0.92519 1.21635 0.95773 0.91009 0.86905 0.90880 1.45900 1.69117 1.14138 1.06553 1.21485 0.75949 0.89247 0.83892 1.90722 1.51792 1.21983 1.82865 1.21577 1.06745 0.97773 0.90161 1.21568 1.02396 0.98061 0.93293 1.22276 1.07447 0.94861 0.77303 1.47213 1.10270 1.45283 1.19652 1.21349 0.85318 0.95319 0.87432 1.84895 1.14098 1.43450 1.81304 1.78239 1.02934 1.16959 1.20833 1.78245 1.04071 1.24058 1.12763 1.21363 0.84932 0.93829 0.89187 1.84980 1.16387 1.52266 1.70313 1.23169 0.97969 0.99867 0.96724 1.21656 0.95667 0.87787 0.91856 1.44747 1.59712 1.28522 1.00989 1.19438 1.26080 1.07969 0.81711 0.89470 1.25634 1.00994 0.97807 1.02008 1.70056 1.40540 1.19047 1.30600 0.85007 0.77006 0.77423 0.79886 1.18694 1.22624 1.22017 0.94982 0.93428 0.90698 0.74592 0.85288 0.84596 0.92024 0.92978 0.85457 0.85299 0.70381 0.70127 0.92228 0.91013 1.00146 0.90589 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.14 71.98 0.66 -4.22 16 2 C 0.15 5.44 3.48 45.34 0.16 5.59 16 3 H 0.06 1.84 7.68 -2.39 -0.02 1.83 16 4 C 0.15 4.98 2.76 46.18 0.13 5.11 16 5 H 0.07 2.68 7.41 -2.39 -0.02 2.66 16 6 N -0.71 -15.34 5.20 -436.91 -2.27 -17.61 16 7 C 0.51 10.71 7.83 87.66 0.69 11.39 16 8 O -0.59 -19.09 15.71 -3.03 -0.05 -19.14 16 9 C -0.12 -0.96 5.70 29.85 0.17 -0.79 16 10 C -0.11 -1.22 4.83 30.60 0.15 -1.07 16 11 C 0.10 0.49 6.01 86.38 0.52 1.01 16 12 N -0.50 -6.54 2.76 -755.16 -2.08 -8.62 16 13 C 0.42 7.00 9.15 179.72 1.65 8.65 16 14 O -0.43 -4.45 13.58 -89.41 -1.21 -5.67 16 15 N -0.35 -8.52 12.72 -173.66 -2.21 -10.73 16 16 N -0.35 -8.61 12.72 -173.65 -2.21 -10.82 16 17 C 0.42 7.13 9.15 179.71 1.65 8.78 16 18 O -0.44 -4.73 13.58 -89.46 -1.21 -5.94 16 19 C -0.14 -5.24 6.77 31.99 0.22 -5.02 16 20 C 0.16 7.68 5.89 86.86 0.51 8.19 16 21 N -0.61 -29.64 3.13 -668.28 -2.09 -31.73 16 22 C -0.22 -11.76 9.89 84.03 0.83 -10.93 16 23 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 24 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 25 N -0.95 -56.09 10.09 21.65 0.22 -55.87 16 26 Si 0.98 44.43 29.55 68.60 2.03 46.46 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 32 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.42 6.15 8.31 -92.71 -0.77 5.38 16 34 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 37 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 38 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.43 0.57 9.06 -74.06 -0.67 -0.10 16 41 H 0.44 -0.57 9.06 -74.06 -0.67 -1.24 16 42 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 44 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H 0.08 4.26 5.87 -2.39 -0.01 4.24 16 46 H 0.24 14.10 8.31 -92.72 -0.77 13.33 16 Total: -1.00 -87.33 387.49 -4.38 -91.71 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -1.07 Total: 4.82 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 7.78 Total: 23.16 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -10.65 Total: -135.39 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -2.48 Total: -30.75 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -87.33 -4.38 -91.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692372432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.648 kcal (2) G-P(sol) polarization free energy of solvation -87.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds