Wall clock time and date at job start Tue Mar 31 2020 23:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21556 * 119.99885 * 0.02562 * 16 15 14 18 18 C 1.47855 * 120.00556 * 180.02562 * 16 15 14 19 19 C 1.39631 * 120.49808 * 359.72711 * 18 16 15 20 20 N 1.31694 * 120.82696 * 179.70029 * 19 18 16 21 21 C 1.31815 * 122.01602 * 0.58929 * 20 19 18 22 22 C 1.39406 * 120.91238 * 359.70448 * 21 20 19 23 23 C 1.48409 * 120.46615 * 179.97438 * 22 21 20 24 24 C 1.39331 * 120.11902 * 179.74307 * 23 22 21 25 25 C 1.38024 * 119.87622 * 179.70022 * 24 23 22 26 26 C 1.38316 * 120.11894 * 0.59510 * 25 24 23 27 27 C 1.38325 * 120.24491 * 359.68311 * 26 25 24 28 28 C 1.38016 * 120.11961 * 0.02562 * 27 26 25 29 29 C 1.39508 * 119.06517 * 359.97438 * 22 21 20 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 38 38 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 39 39 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 40 40 H 1.07996 * 119.58270 * 359.97438 * 19 18 16 41 41 H 1.07999 * 119.54600 * 179.68042 * 21 20 19 42 42 H 1.08001 * 120.05685 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.94160 * 180.32614 * 25 24 23 44 44 H 1.08000 * 119.87655 * 179.69791 * 26 25 24 45 45 H 1.08000 * 119.93754 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.06161 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.91139 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6271 -1.4457 3.7796 18 6 1.6040 0.3501 4.8702 19 6 0.8835 1.5402 4.7515 20 7 0.5264 2.2223 5.8200 21 6 0.8373 1.8262 7.0381 22 6 1.5600 0.6525 7.2470 23 6 1.9052 0.2161 8.6228 24 6 2.6232 -0.9610 8.8235 25 6 2.9469 -1.3589 10.1048 26 6 2.5493 -0.5979 11.1892 27 6 1.8314 0.5686 10.9961 28 6 1.5074 0.9790 9.7188 29 6 1.9541 -0.1060 6.1444 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 1.7304 0.3692 -6.7999 37 1 1.6054 -1.7197 1.2953 38 1 3.1263 -0.7993 1.2057 39 1 1.1483 0.8592 2.3518 40 1 0.6120 1.9037 3.7715 41 1 0.5283 2.4193 7.8861 42 1 2.9296 -1.5586 7.9776 43 1 3.5080 -2.2684 10.2613 44 1 2.8006 -0.9155 12.1904 45 1 1.5231 1.1587 11.8464 46 1 0.9472 1.8901 9.5691 47 1 2.5153 -1.0200 6.2717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698748155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:33 Heat of formation + Delta-G solvation = 32.633802 kcal Electronic energy + Delta-G solvation = -27057.688242 eV Core-core repulsion = 23205.335579 eV Total energy + Delta-G solvation = -3852.352664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18341 -39.78509 -38.97197 -37.04966 -34.69748 -33.94366 -33.03425 -32.29606 -31.40590 -30.55359 -29.63074 -26.93134 -25.99704 -24.81694 -24.48184 -22.76644 -22.08706 -21.89687 -20.77058 -20.12880 -18.66106 -17.72562 -17.26631 -17.04768 -16.98562 -15.91842 -15.71160 -15.65697 -14.91062 -14.85498 -14.64450 -14.38515 -14.21290 -14.19279 -13.92215 -13.70051 -13.41797 -13.27665 -13.21303 -12.81286 -12.65576 -12.49917 -12.25319 -11.88519 -11.51205 -11.48019 -11.08635 -10.80988 -10.77586 -10.73172 -10.66849 -10.43937 -10.14106 -10.04267 -9.84078 -9.59836 -9.46806 -9.23736 -8.92134 -8.70261 -7.25386 -5.78269 -3.14152 -0.07682 0.39471 0.88995 1.27869 2.54760 2.84748 3.22381 3.34400 3.36968 3.43363 3.56627 3.71404 3.99134 4.22344 4.27592 4.33064 4.42679 4.47869 4.56962 4.65338 4.72342 4.79096 4.88973 5.00879 5.03673 5.05139 5.18257 5.37420 5.47785 5.48500 5.52191 5.55262 5.61517 5.69693 5.80853 5.82729 5.88145 6.00116 6.01825 6.04131 6.04817 6.17456 6.27358 6.42183 6.43573 6.61970 6.71059 7.21836 7.34132 7.91316 7.97936 8.40456 9.19354 9.91387 10.10847 11.40119 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030472 B = 0.001687 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.652409 B =16592.513509 C =17354.029844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.718 5.718 16 C 0.561 3.439 17 O -0.533 6.533 18 C -0.178 4.178 19 C 0.133 3.867 20 N -0.479 5.479 21 C 0.129 3.871 22 C -0.102 4.102 23 C -0.044 4.044 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.109 4.109 29 C -0.010 4.010 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.400 0.600 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 2.910 37.103 37.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.191 4.191 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.346 3.654 17 O -0.411 6.411 18 C -0.183 4.183 19 C -0.025 4.025 20 N -0.187 5.187 21 C -0.028 4.028 22 C -0.104 4.104 23 C -0.045 4.045 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.127 4.127 29 C -0.036 4.036 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.092 2.781 36.839 37.003 hybrid contribution -0.470 0.802 -0.041 0.930 sum -2.561 3.583 36.798 37.061 Atomic orbital electron populations 1.21832 0.94684 1.02378 1.01320 1.21626 0.96703 1.00632 0.94526 0.90457 1.20545 0.97239 0.94249 0.84238 1.42675 1.67577 1.27392 1.02347 1.19067 1.29465 1.07183 0.81786 0.89167 1.24671 1.00741 0.98620 0.95093 1.69699 1.51255 1.40222 0.96969 0.86549 0.80234 0.84834 0.76860 1.21098 1.21711 1.20378 1.21470 1.00577 0.95332 0.82301 1.45970 1.57280 1.27847 1.05820 1.17962 0.79684 0.84805 0.82908 1.90798 1.39806 1.23917 1.86554 1.20997 1.04105 0.98411 0.94788 1.23070 0.91611 0.89746 0.98071 1.67692 1.19912 1.32337 0.98722 1.23117 0.92113 0.92674 0.94937 1.19745 1.00849 0.96804 0.93045 1.18565 0.99322 0.95642 0.90944 1.21315 0.97692 0.95734 0.97773 1.21146 0.99828 1.00034 0.92319 1.21290 0.97943 0.95038 0.99121 1.21116 0.98616 0.96874 0.96888 1.21213 0.99833 0.99592 0.92020 1.21810 0.93454 0.98382 0.89985 0.92282 0.93695 0.91640 0.95101 0.95176 0.80624 0.93044 0.90786 0.90766 0.76474 0.82157 0.81966 0.85410 0.85540 0.85803 0.85591 0.85513 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.94 37.16 0.33 -1.54 16 2 C -0.12 -1.58 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 4 C 0.17 3.03 5.65 -4.04 -0.02 3.01 16 5 N -0.75 -17.40 5.13 -59.91 -0.31 -17.71 16 6 C -0.25 -6.90 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 8 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 9 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 10 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 14 C 0.13 1.55 5.06 -4.05 -0.02 1.53 16 15 N -0.72 -7.49 5.24 -61.25 -0.32 -7.81 16 16 C 0.56 6.68 7.78 -12.33 -0.10 6.58 16 17 O -0.53 -8.15 16.42 5.32 0.09 -8.06 16 18 C -0.18 -1.76 5.89 -104.86 -0.62 -2.38 16 19 C 0.13 1.17 10.71 -17.09 -0.18 0.98 16 20 N -0.48 -4.47 10.33 -12.64 -0.13 -4.60 16 21 C 0.13 1.01 10.59 -17.12 -0.18 0.83 16 22 C -0.10 -0.84 5.89 -104.80 -0.62 -1.46 16 23 C -0.04 -0.33 5.88 -104.89 -0.62 -0.94 16 24 C -0.11 -0.76 9.44 -39.25 -0.37 -1.13 16 25 C -0.12 -0.69 10.03 -39.63 -0.40 -1.09 16 26 C -0.12 -0.62 10.04 -39.52 -0.40 -1.02 16 27 C -0.12 -0.62 10.03 -39.63 -0.40 -1.02 16 28 C -0.11 -0.65 9.44 -39.25 -0.37 -1.02 16 29 C -0.01 -0.10 9.07 -38.53 -0.35 -0.45 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 32 H 0.06 0.99 7.18 -51.93 -0.37 0.61 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.36 8.04 4.71 -40.82 -0.19 7.85 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.20 5.71 -40.82 -0.23 2.97 16 40 H 0.16 1.02 6.41 -52.49 -0.34 0.68 16 41 H 0.16 0.83 6.21 -52.49 -0.33 0.50 16 42 H 0.13 0.82 6.27 -52.49 -0.33 0.49 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.12 0.42 8.06 -52.49 -0.42 -0.01 16 45 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 46 H 0.13 0.50 6.23 -52.49 -0.33 0.17 16 47 H 0.15 1.35 5.99 -52.48 -0.31 1.04 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -34.85 387.71 -9.75 -44.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.20 Total: 7.08 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -4.78 Total: -7.94 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.02 Total: -58.61 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.85 -9.75 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698748155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.236 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds