Wall clock time and date at job start Tue Mar 31 2020 23:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21556 * 119.99885 * 0.02562 * 16 15 14 18 18 C 1.47855 * 120.00556 * 180.02562 * 16 15 14 19 19 C 1.39631 * 120.49808 * 359.72711 * 18 16 15 20 20 N 1.31694 * 120.82696 * 179.70029 * 19 18 16 21 21 C 1.31815 * 122.01602 * 0.58929 * 20 19 18 22 22 C 1.39406 * 120.91238 * 359.70448 * 21 20 19 23 23 C 1.48409 * 120.46615 * 179.97438 * 22 21 20 24 24 C 1.39331 * 120.11902 * 179.74307 * 23 22 21 25 25 C 1.38024 * 119.87622 * 179.70022 * 24 23 22 26 26 C 1.38316 * 120.11894 * 0.59510 * 25 24 23 27 27 C 1.38325 * 120.24491 * 359.68311 * 26 25 24 28 28 C 1.38016 * 120.11961 * 0.02562 * 27 26 25 29 29 C 1.39508 * 119.06517 * 359.97438 * 22 21 20 30 30 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 32 32 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 38 38 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 39 39 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 40 40 H 1.07996 * 119.58270 * 359.97438 * 19 18 16 41 41 H 1.07999 * 119.54600 * 179.68042 * 21 20 19 42 42 H 1.08001 * 120.05685 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.94160 * 180.32614 * 25 24 23 44 44 H 1.08000 * 119.87655 * 179.69791 * 26 25 24 45 45 H 1.08000 * 119.93754 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.06161 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.91139 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6271 -1.4457 3.7796 18 6 1.6040 0.3501 4.8702 19 6 0.8835 1.5402 4.7515 20 7 0.5264 2.2223 5.8200 21 6 0.8373 1.8262 7.0381 22 6 1.5600 0.6525 7.2470 23 6 1.9052 0.2161 8.6228 24 6 2.6232 -0.9610 8.8235 25 6 2.9469 -1.3589 10.1048 26 6 2.5493 -0.5979 11.1892 27 6 1.8314 0.5686 10.9961 28 6 1.5074 0.9790 9.7188 29 6 1.9541 -0.1060 6.1444 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 1.7304 0.3692 -6.7999 37 1 1.6054 -1.7197 1.2953 38 1 3.1263 -0.7993 1.2057 39 1 1.1483 0.8592 2.3518 40 1 0.6120 1.9037 3.7715 41 1 0.5283 2.4193 7.8861 42 1 2.9296 -1.5586 7.9776 43 1 3.5080 -2.2684 10.2613 44 1 2.8006 -0.9155 12.1904 45 1 1.5231 1.1587 11.8464 46 1 0.9472 1.8901 9.5691 47 1 2.5153 -1.0200 6.2717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698748155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:32 Heat of formation + Delta-G solvation = 10.388754 kcal Electronic energy + Delta-G solvation = -27058.652860 eV Core-core repulsion = 23205.335579 eV Total energy + Delta-G solvation = -3853.317281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87931 -40.54692 -39.55997 -38.34247 -36.13927 -34.62711 -34.25448 -33.39437 -32.31369 -31.80736 -30.18680 -27.95467 -27.46646 -25.62809 -25.18843 -23.97662 -23.05792 -22.61392 -21.71643 -21.27713 -19.77655 -19.13767 -18.14221 -17.76242 -17.52472 -16.91051 -16.64658 -16.48135 -16.20842 -15.85078 -15.62390 -15.40821 -15.15003 -14.98499 -14.91752 -14.69037 -14.48940 -14.15897 -13.95931 -13.86414 -13.73094 -13.63035 -13.37583 -13.20311 -12.87253 -12.30962 -12.18464 -12.13542 -12.01915 -11.92256 -11.75954 -11.70882 -11.40092 -11.35977 -10.97830 -10.74631 -10.58078 -10.18071 -9.89369 -9.29369 -9.21440 -8.02197 -5.36259 -0.66994 -0.28108 0.46515 0.75440 1.38212 1.43178 1.50461 1.72593 1.94625 2.49495 2.62890 3.02009 3.13270 3.29255 3.40148 3.52466 3.63656 3.66030 3.69974 3.87597 3.93333 4.01266 4.05265 4.10664 4.19430 4.29793 4.37847 4.51725 4.56319 4.57313 4.68286 4.75452 4.85471 4.89680 4.93094 5.00602 5.02182 5.10247 5.12056 5.22658 5.32176 5.36892 5.45502 5.54179 5.57561 5.59406 5.76117 6.03369 6.21215 6.37416 6.70438 7.03657 7.08678 7.83653 8.04314 9.19377 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030472 B = 0.001687 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.652409 B =16592.513509 C =17354.029844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.091 0.909 4 C 0.159 3.841 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.053 0.947 8 C -0.065 4.065 9 N -0.985 5.985 10 Si 0.958 3.042 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.136 3.864 15 N -0.704 5.704 16 C 0.563 3.437 17 O -0.575 6.575 18 C -0.189 4.189 19 C 0.136 3.864 20 N -0.493 5.493 21 C 0.131 3.869 22 C -0.100 4.100 23 C -0.063 4.063 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.122 4.122 28 C -0.112 4.112 29 C -0.022 4.022 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.368 0.632 36 H 0.258 0.742 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.414 0.586 40 H 0.185 0.815 41 H 0.191 0.809 42 H 0.123 0.877 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 5.419 40.328 40.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.109 0.891 4 C 0.032 3.968 5 N -0.400 5.400 6 C -0.370 4.370 7 H 0.071 0.929 8 C -0.257 4.257 9 N -0.636 5.636 10 Si 0.785 3.215 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.169 1.169 14 C 0.012 3.988 15 N -0.356 5.356 16 C 0.350 3.650 17 O -0.455 6.455 18 C -0.195 4.195 19 C -0.022 4.022 20 N -0.201 5.201 21 C -0.025 4.025 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.130 4.130 29 C -0.048 4.048 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.202 0.798 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.253 0.747 40 H 0.202 0.798 41 H 0.208 0.792 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.166 0.834 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.727 5.308 40.120 40.641 hybrid contribution 0.113 -0.093 -0.921 0.933 sum -3.614 5.215 39.199 39.709 Atomic orbital electron populations 1.21828 0.93634 1.02425 1.02196 1.21413 0.97378 1.00605 0.92405 0.89120 1.20705 0.97024 0.94225 0.84854 1.42615 1.67515 1.27968 1.01871 1.19046 1.28092 1.05736 0.84112 0.92900 1.25564 1.02621 1.02957 0.94524 1.69899 1.53385 1.42273 0.98006 0.85370 0.78838 0.79590 0.77742 1.20335 1.22400 1.16923 1.21214 1.00010 0.95152 0.82447 1.45764 1.56971 1.28073 1.04828 1.18241 0.78845 0.84299 0.83615 1.90779 1.41789 1.25818 1.87127 1.20840 1.05579 0.99125 0.93906 1.23381 0.90760 0.88966 0.99101 1.67780 1.20452 1.32610 0.99239 1.23579 0.91066 0.92473 0.95418 1.19846 1.00516 0.96730 0.93141 1.18662 1.00387 0.96283 0.91000 1.21447 0.98384 0.96135 0.98326 1.21384 1.00099 1.00795 0.92181 1.21630 0.97280 0.94899 0.99877 1.21469 0.98047 0.96965 0.97443 1.21505 0.99584 1.00055 0.91838 1.21897 0.93788 0.98611 0.90530 0.92765 0.90178 0.93315 0.95705 0.95721 0.79751 0.93345 0.91380 0.91600 0.74716 0.79841 0.79224 0.85874 0.84332 0.83739 0.83210 0.83445 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.94 71.98 0.64 -2.67 16 2 C -0.10 -2.49 2.46 -10.79 -0.03 -2.52 16 3 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 4 C 0.16 5.75 5.65 86.38 0.49 6.24 16 5 N -0.75 -34.16 5.13 -343.46 -1.76 -35.92 16 6 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 7 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 8 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 9 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 10 Si 0.96 44.54 27.74 68.60 1.90 46.45 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 14 C 0.14 3.16 5.06 86.38 0.44 3.60 16 15 N -0.70 -13.35 5.24 -465.98 -2.44 -15.79 16 16 C 0.56 13.01 7.78 86.79 0.68 13.69 16 17 O -0.57 -17.85 16.42 -3.89 -0.06 -17.91 16 18 C -0.19 -3.58 5.89 -20.02 -0.12 -3.70 16 19 C 0.14 2.08 10.71 85.05 0.91 2.99 16 20 N -0.49 -8.02 10.33 -193.91 -2.00 -10.03 16 21 C 0.13 1.78 10.59 84.98 0.90 2.68 16 22 C -0.10 -1.55 5.89 -19.98 -0.12 -1.67 16 23 C -0.06 -0.87 5.88 -20.04 -0.12 -0.99 16 24 C -0.12 -1.77 9.44 22.48 0.21 -1.56 16 25 C -0.13 -1.43 10.03 22.24 0.22 -1.20 16 26 C -0.12 -1.05 10.04 22.31 0.22 -0.83 16 27 C -0.12 -0.99 10.03 22.24 0.22 -0.76 16 28 C -0.11 -1.10 9.44 22.48 0.21 -0.89 16 29 C -0.02 -0.42 9.07 22.95 0.21 -0.21 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.29 7.18 -2.39 -0.02 1.27 16 32 H 0.05 1.31 7.18 -2.39 -0.02 1.29 16 33 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.37 15.54 4.71 -92.71 -0.44 15.10 16 36 H 0.26 15.78 8.31 -92.70 -0.77 15.00 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.41 5.30 5.71 -92.71 -0.53 4.77 16 40 H 0.18 1.72 6.41 -2.91 -0.02 1.70 16 41 H 0.19 1.33 6.21 -2.91 -0.02 1.31 16 42 H 0.12 1.73 6.27 -2.91 -0.02 1.71 16 43 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.15 0.45 8.06 -2.91 -0.02 0.42 16 46 H 0.15 0.69 6.23 -2.91 -0.02 0.67 16 47 H 0.14 2.77 5.99 -2.91 -0.02 2.75 16 Total: -1.00 -77.56 387.71 2.25 -75.31 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.01 Total: 24.98 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.33 Total: -3.95 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -5.90 Total: -124.87 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.45 kcal Total: -77.56 2.25 -75.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698748155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.701 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds