Wall clock time and date at job start Tue Mar 31 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46699 * 2 1 4 4 C 1.52995 * 109.46972 * 120.00172 * 2 1 3 5 5 N 1.46500 * 109.46874 * 175.00563 * 4 2 1 6 6 C 1.36933 * 120.00107 * 180.02562 * 5 4 2 7 7 H 1.08008 * 120.00363 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00498 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99505 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00421 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47146 * 59.99711 * 10 8 6 12 12 H 1.48500 * 109.47304 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46815 * 299.99964 * 10 8 6 14 14 N 1.46496 * 109.47429 * 240.00776 * 2 1 3 15 15 C 1.46506 * 119.99295 * 299.99850 * 14 2 1 16 16 C 1.34774 * 120.00661 * 119.99474 * 14 2 1 17 17 O 1.21551 * 119.99609 * 4.84446 * 16 14 2 18 18 C 1.47854 * 120.00155 * 184.83636 * 16 14 2 19 19 C 1.39627 * 120.49940 * 141.55653 * 18 16 14 20 20 N 1.31688 * 120.82884 * 179.70879 * 19 18 16 21 21 C 1.31813 * 122.02051 * 0.26470 * 20 19 18 22 22 C 1.39399 * 120.91030 * 0.02562 * 21 20 19 23 23 C 1.48409 * 120.46906 * 179.97438 * 22 21 20 24 24 C 1.39335 * 120.12022 * 179.71753 * 23 22 21 25 25 C 1.38017 * 119.87486 * 179.76825 * 24 23 22 26 26 C 1.38322 * 120.12384 * 0.51028 * 25 24 23 27 27 C 1.38317 * 120.23949 * 359.74487 * 26 25 24 28 28 C 1.38024 * 120.12159 * 359.97438 * 27 26 25 29 29 C 1.39517 * 119.06417 * 359.97438 * 22 21 20 30 30 H 1.09001 * 109.47505 * 299.99837 * 1 2 3 31 31 H 1.09002 * 109.47418 * 60.00108 * 1 2 3 32 32 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47280 * 294.99817 * 4 2 1 34 34 H 1.08995 * 109.47569 * 55.00521 * 4 2 1 35 35 H 0.97006 * 120.00398 * 359.97438 * 5 4 2 36 36 H 0.97006 * 119.99285 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.46715 * 264.90657 * 15 14 2 38 38 H 1.08989 * 109.47707 * 24.91006 * 15 14 2 39 39 H 1.09006 * 109.46918 * 144.91529 * 15 14 2 40 40 H 1.07997 * 119.58372 * 359.97115 * 19 18 16 41 41 H 1.07994 * 119.54776 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.06104 * 0.02667 * 24 23 22 43 43 H 1.08003 * 119.93697 * 180.25219 * 25 24 23 44 44 H 1.07997 * 119.87648 * 179.76806 * 26 25 24 45 45 H 1.07999 * 119.93810 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.05986 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.91211 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1838 -1.4387 2.2066 7 1 3.6468 -1.8441 3.0516 8 6 5.5672 -1.5387 2.1509 9 7 6.2217 -1.0452 1.1210 10 14 6.5000 -2.3736 3.5374 11 1 6.0434 -3.7809 3.6641 12 1 7.9548 -2.3494 3.2402 13 1 6.2434 -1.6534 4.8105 14 7 2.0184 -0.6904 -1.1962 15 6 1.6645 -2.0930 -1.4281 16 6 2.7932 -0.0354 -2.0834 17 8 3.1595 1.0996 -1.8486 18 6 3.1977 -0.6974 -3.3420 19 6 3.2563 0.0249 -4.5355 20 7 3.6211 -0.5568 -5.6592 21 6 3.9401 -1.8347 -5.7132 22 6 3.9029 -2.6309 -4.5696 23 6 4.2634 -4.0688 -4.6417 24 6 4.2294 -4.8566 -3.4929 25 6 4.5611 -6.1943 -3.5666 26 6 4.9369 -6.7507 -4.7760 27 6 4.9774 -5.9720 -5.9184 28 6 4.6422 -4.6345 -5.8572 29 6 3.5220 -2.0571 -3.3563 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 3.9824 -0.4626 0.4316 36 1 7.1884 -1.1148 1.0823 37 1 2.4604 -2.7356 -1.0514 38 1 0.7346 -2.3239 -0.9085 39 1 1.5354 -2.2632 -2.4970 40 1 3.0032 1.0748 -4.5363 41 1 4.2342 -2.2708 -6.6563 42 1 3.9401 -4.4222 -2.5474 43 1 4.5311 -6.8068 -2.6776 44 1 5.1992 -7.7970 -4.8284 45 1 5.2719 -6.4113 -6.8600 46 1 4.6738 -4.0275 -6.7500 47 1 3.4833 -2.6461 -2.4519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698823435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:58 Heat of formation + Delta-G solvation = 52.773534 kcal Electronic energy + Delta-G solvation = -29357.887078 eV Core-core repulsion = 25506.407739 eV Total energy + Delta-G solvation = -3851.479339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87130 -39.50279 -38.63893 -36.40119 -34.26824 -33.53349 -32.81474 -31.37037 -30.91778 -29.97450 -29.25046 -26.97867 -25.69962 -24.81196 -24.21021 -22.83119 -22.29932 -21.77263 -20.66501 -19.13264 -17.68458 -17.29531 -17.09565 -16.57657 -16.36694 -16.05710 -15.32183 -15.08825 -14.69575 -14.56599 -14.11573 -13.91891 -13.86793 -13.67501 -13.60837 -13.26924 -13.20481 -12.89164 -12.68216 -12.43548 -12.30684 -12.25738 -12.04502 -11.82962 -11.53831 -11.47406 -11.13826 -10.85147 -10.79343 -10.50153 -10.31028 -10.09124 -9.98627 -9.70385 -9.55234 -9.28865 -9.10661 -8.87854 -8.37850 -8.25607 -6.91305 -5.73607 -3.03694 0.39129 0.89442 1.25037 1.69213 2.97474 3.16978 3.42648 3.47575 3.49111 3.56766 3.92209 4.18796 4.44094 4.51543 4.58728 4.70188 4.75524 4.78586 4.83711 5.00238 5.11570 5.22757 5.25340 5.29457 5.34590 5.42078 5.44832 5.52979 5.58938 5.62813 5.77520 5.80705 5.85410 5.91221 5.99628 6.02779 6.05890 6.15432 6.25237 6.33828 6.35706 6.43231 6.43922 6.51074 6.69171 6.79918 6.92426 7.59217 7.68877 7.81270 8.40471 8.43592 9.54977 10.13459 10.48821 11.48065 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004232 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.813915 B = 6613.908978 C = 8616.896798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 H 0.102 0.898 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.589 5.589 15 C 0.073 3.927 16 C 0.566 3.434 17 O -0.525 6.525 18 C -0.164 4.164 19 C 0.149 3.851 20 N -0.484 5.484 21 C 0.122 3.878 22 C -0.105 4.105 23 C -0.039 4.039 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.111 4.111 29 C -0.036 4.036 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.387 0.613 36 H 0.255 0.745 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -8.795 -14.865 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.374 4.374 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.321 5.321 15 C -0.070 4.070 16 C 0.353 3.647 17 O -0.401 6.401 18 C -0.170 4.170 19 C -0.009 4.009 20 N -0.191 5.191 21 C -0.036 4.036 22 C -0.107 4.107 23 C -0.040 4.040 24 C -0.122 4.122 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.129 4.129 29 C -0.061 4.061 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.742 -7.756 -15.339 19.757 hybrid contribution 0.877 -1.029 1.464 1.993 sum -8.865 -8.785 -13.875 18.662 Atomic orbital electron populations 1.22077 0.95010 1.02112 1.02231 1.21453 0.93279 0.98612 0.84398 0.87976 1.21002 0.87193 0.96711 0.93527 1.42307 0.99640 1.70159 1.25195 1.19150 0.89417 1.29632 0.99234 0.91358 1.24745 0.96432 1.01599 0.97960 1.69685 1.07243 1.50540 1.30119 0.86311 0.79093 0.79190 0.81817 1.21356 1.21721 1.21274 1.47537 1.50255 1.12083 1.22257 1.22073 1.01560 0.82329 1.01004 1.17973 0.78247 0.85705 0.82812 1.90805 1.53853 1.18478 1.77006 1.20943 1.05253 0.94775 0.95983 1.22923 0.91756 0.99993 0.86182 1.67719 1.11658 1.11306 1.28429 1.23013 0.93727 0.89128 0.97701 1.19694 1.02476 0.93986 0.94515 1.18585 1.00212 0.91156 0.94046 1.21338 0.99011 0.93954 0.97943 1.21147 0.98890 0.95030 0.98067 1.21241 0.99640 0.99963 0.92857 1.21063 1.00235 0.93823 0.98590 1.21175 0.99463 0.95366 0.96903 1.22328 0.91717 0.93664 0.98404 0.91193 0.92547 0.92323 0.95364 0.96206 0.77894 0.93482 0.91592 0.90695 0.91551 0.81758 0.82347 0.85381 0.85564 0.86014 0.85850 0.85682 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.18 37.16 0.34 -1.56 16 2 C 0.13 2.09 2.79 -67.93 -0.19 1.90 16 3 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 4 C 0.14 2.84 5.56 -4.04 -0.02 2.82 16 5 N -0.73 -18.58 5.43 -59.91 -0.33 -18.91 16 6 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 7 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 10 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 N -0.59 -9.60 2.24 -175.04 -0.39 -9.99 16 15 C 0.07 0.95 8.00 59.85 0.48 1.43 16 16 C 0.57 10.35 7.08 -12.33 -0.09 10.26 16 17 O -0.52 -11.48 16.25 5.32 0.09 -11.40 16 18 C -0.16 -2.60 5.27 -104.86 -0.55 -3.15 16 19 C 0.15 2.19 10.79 -17.09 -0.18 2.01 16 20 N -0.48 -6.77 10.33 -12.65 -0.13 -6.90 16 21 C 0.12 1.49 10.59 -17.13 -0.18 1.31 16 22 C -0.10 -1.34 5.89 -104.80 -0.62 -1.96 16 23 C -0.04 -0.46 5.88 -104.90 -0.62 -1.08 16 24 C -0.10 -1.24 9.44 -39.25 -0.37 -1.61 16 25 C -0.11 -1.18 10.03 -39.63 -0.40 -1.58 16 26 C -0.12 -1.09 10.04 -39.52 -0.40 -1.49 16 27 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 28 C -0.11 -1.09 9.44 -39.26 -0.37 -1.46 16 29 C -0.04 -0.51 7.05 -38.52 -0.27 -0.78 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 35 H 0.39 10.79 7.06 -40.82 -0.29 10.51 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.07 0.95 6.87 -51.92 -0.36 0.59 16 38 H 0.07 0.83 6.44 -51.94 -0.33 0.49 16 39 H 0.07 0.75 5.83 -51.93 -0.30 0.44 16 40 H 0.17 2.24 8.05 -52.49 -0.42 1.82 16 41 H 0.16 1.43 6.21 -52.49 -0.33 1.11 16 42 H 0.13 1.52 6.27 -52.49 -0.33 1.19 16 43 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.13 0.94 6.23 -52.49 -0.33 0.62 16 47 H 0.15 2.19 3.55 -52.49 -0.19 2.00 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -34.66 383.40 -9.43 -44.09 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.07 Total: 11.50 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.08 Total: -3.74 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.12 Total: -63.71 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.66 -9.43 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698823435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.863 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds