Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46699 * 2 1 4 4 C 1.52995 * 109.46972 * 120.00172 * 2 1 3 5 5 N 1.46500 * 109.46874 * 175.00563 * 4 2 1 6 6 C 1.36933 * 120.00107 * 180.02562 * 5 4 2 7 7 H 1.08008 * 120.00363 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00498 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99505 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00421 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47146 * 59.99711 * 10 8 6 12 12 H 1.48500 * 109.47304 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46815 * 299.99964 * 10 8 6 14 14 N 1.46496 * 109.47429 * 240.00776 * 2 1 3 15 15 C 1.46506 * 119.99295 * 299.99850 * 14 2 1 16 16 C 1.34774 * 120.00661 * 119.99474 * 14 2 1 17 17 O 1.21551 * 119.99609 * 4.84446 * 16 14 2 18 18 C 1.47854 * 120.00155 * 184.83636 * 16 14 2 19 19 C 1.39627 * 120.49940 * 141.55653 * 18 16 14 20 20 N 1.31688 * 120.82884 * 179.70879 * 19 18 16 21 21 C 1.31813 * 122.02051 * 0.26470 * 20 19 18 22 22 C 1.39399 * 120.91030 * 0.02562 * 21 20 19 23 23 C 1.48409 * 120.46906 * 179.97438 * 22 21 20 24 24 C 1.39335 * 120.12022 * 179.71753 * 23 22 21 25 25 C 1.38017 * 119.87486 * 179.76825 * 24 23 22 26 26 C 1.38322 * 120.12384 * 0.51028 * 25 24 23 27 27 C 1.38317 * 120.23949 * 359.74487 * 26 25 24 28 28 C 1.38024 * 120.12159 * 359.97438 * 27 26 25 29 29 C 1.39517 * 119.06417 * 359.97438 * 22 21 20 30 30 H 1.09001 * 109.47505 * 299.99837 * 1 2 3 31 31 H 1.09002 * 109.47418 * 60.00108 * 1 2 3 32 32 H 1.09000 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47280 * 294.99817 * 4 2 1 34 34 H 1.08995 * 109.47569 * 55.00521 * 4 2 1 35 35 H 0.97006 * 120.00398 * 359.97438 * 5 4 2 36 36 H 0.97006 * 119.99285 * 179.97438 * 9 8 6 37 37 H 1.09008 * 109.46715 * 264.90657 * 15 14 2 38 38 H 1.08989 * 109.47707 * 24.91006 * 15 14 2 39 39 H 1.09006 * 109.46918 * 144.91529 * 15 14 2 40 40 H 1.07997 * 119.58372 * 359.97115 * 19 18 16 41 41 H 1.07994 * 119.54776 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.06104 * 0.02667 * 24 23 22 43 43 H 1.08003 * 119.93697 * 180.25219 * 25 24 23 44 44 H 1.07997 * 119.87648 * 179.76806 * 26 25 24 45 45 H 1.07999 * 119.93810 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.05986 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.91211 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1838 -1.4387 2.2066 7 1 3.6468 -1.8441 3.0516 8 6 5.5672 -1.5387 2.1509 9 7 6.2217 -1.0452 1.1210 10 14 6.5000 -2.3736 3.5374 11 1 6.0434 -3.7809 3.6641 12 1 7.9548 -2.3494 3.2402 13 1 6.2434 -1.6534 4.8105 14 7 2.0184 -0.6904 -1.1962 15 6 1.6645 -2.0930 -1.4281 16 6 2.7932 -0.0354 -2.0834 17 8 3.1595 1.0996 -1.8486 18 6 3.1977 -0.6974 -3.3420 19 6 3.2563 0.0249 -4.5355 20 7 3.6211 -0.5568 -5.6592 21 6 3.9401 -1.8347 -5.7132 22 6 3.9029 -2.6309 -4.5696 23 6 4.2634 -4.0688 -4.6417 24 6 4.2294 -4.8566 -3.4929 25 6 4.5611 -6.1943 -3.5666 26 6 4.9369 -6.7507 -4.7760 27 6 4.9774 -5.9720 -5.9184 28 6 4.6422 -4.6345 -5.8572 29 6 3.5220 -2.0571 -3.3563 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2951 35 1 3.9824 -0.4626 0.4316 36 1 7.1884 -1.1148 1.0823 37 1 2.4604 -2.7356 -1.0514 38 1 0.7346 -2.3239 -0.9085 39 1 1.5354 -2.2632 -2.4970 40 1 3.0032 1.0748 -4.5363 41 1 4.2342 -2.2708 -6.6563 42 1 3.9401 -4.4222 -2.5474 43 1 4.5311 -6.8068 -2.6776 44 1 5.1992 -7.7970 -4.8284 45 1 5.2719 -6.4113 -6.8600 46 1 4.6738 -4.0275 -6.7500 47 1 3.4833 -2.6461 -2.4519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698823435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = 31.759235 kcal Electronic energy + Delta-G solvation = -29358.798326 eV Core-core repulsion = 25506.407739 eV Total energy + Delta-G solvation = -3852.390588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02217 -40.65363 -39.57015 -37.90376 -35.99515 -34.68169 -34.09592 -32.83023 -31.88706 -31.47155 -30.15338 -28.16541 -27.41213 -25.96711 -25.20609 -24.50594 -23.47018 -22.69892 -21.82590 -20.45257 -19.13926 -18.69411 -18.47410 -17.72038 -17.38445 -17.24890 -16.72909 -16.38368 -16.16192 -15.45309 -15.40447 -15.31603 -15.09700 -14.96984 -14.74251 -14.65435 -14.23078 -13.93497 -13.90731 -13.72920 -13.69732 -13.37153 -13.30417 -13.03168 -12.91781 -12.75534 -12.55689 -12.29949 -12.19884 -11.90650 -11.82257 -11.75238 -11.33244 -11.24484 -10.96481 -10.66087 -10.49550 -9.86572 -9.70181 -9.17316 -9.01759 -7.94553 -5.24970 -0.59600 -0.21605 0.49267 0.78157 1.43583 1.47351 1.53567 1.65294 1.89536 2.53958 2.57184 3.01577 3.15673 3.38254 3.40598 3.51647 3.63119 3.73246 3.79897 3.93408 4.06161 4.08746 4.16867 4.24292 4.28433 4.33084 4.41001 4.43392 4.53575 4.58888 4.59265 4.73550 4.77989 4.86915 4.87643 4.91399 4.95022 5.02385 5.12565 5.14188 5.29086 5.38937 5.46167 5.55508 5.59153 5.61105 5.62095 6.06283 6.23791 6.27595 6.72827 7.02605 7.31117 8.07794 8.30809 9.28081 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.004232 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.813915 B = 6613.908978 C = 8616.896798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.075 4.075 9 N -0.970 5.970 10 Si 0.973 3.027 11 H -0.272 1.272 12 H -0.300 1.300 13 H -0.279 1.279 14 N -0.586 5.586 15 C 0.073 3.927 16 C 0.558 3.442 17 O -0.575 6.575 18 C -0.181 4.181 19 C 0.142 3.858 20 N -0.490 5.490 21 C 0.128 3.872 22 C -0.098 4.098 23 C -0.060 4.060 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.110 4.110 29 C -0.044 4.044 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.371 0.629 36 H 0.248 0.752 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.167 0.833 41 H 0.197 0.803 42 H 0.114 0.886 43 H 0.135 0.865 44 H 0.147 0.853 45 H 0.155 0.845 46 H 0.150 0.850 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 -11.465 -16.026 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.015 3.985 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.097 0.903 8 C -0.267 4.267 9 N -0.621 5.621 10 Si 0.802 3.198 11 H -0.198 1.198 12 H -0.226 1.226 13 H -0.205 1.205 14 N -0.317 5.317 15 C -0.069 4.069 16 C 0.346 3.654 17 O -0.456 6.456 18 C -0.186 4.186 19 C -0.015 4.015 20 N -0.197 5.197 21 C -0.030 4.030 22 C -0.100 4.100 23 C -0.060 4.060 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.128 4.128 29 C -0.069 4.069 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.202 0.798 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.184 0.816 41 H 0.213 0.787 42 H 0.132 0.868 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.172 0.828 46 H 0.168 0.832 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.836 -10.465 -16.468 22.319 hybrid contribution 1.159 -0.308 1.791 2.155 sum -9.677 -10.774 -14.677 20.619 Atomic orbital electron populations 1.21994 0.90860 1.03845 1.03413 1.21389 0.96268 0.96498 0.83377 0.91123 1.21222 0.84130 0.97943 0.95207 1.42537 1.02020 1.69840 1.24155 1.19614 0.89909 1.28359 0.99634 0.90256 1.25590 0.97544 1.03116 1.00490 1.69886 1.06843 1.52851 1.32488 0.85215 0.76971 0.78745 0.78843 1.19801 1.22626 1.20519 1.47654 1.49344 1.13185 1.21513 1.22221 1.02009 0.80033 1.02620 1.18446 0.77804 0.85320 0.83817 1.90760 1.55910 1.20670 1.78256 1.20792 1.07117 0.95443 0.95222 1.22966 0.92112 1.00205 0.86236 1.67788 1.11949 1.12221 1.27779 1.23599 0.92130 0.88372 0.98871 1.19865 1.01330 0.94890 0.93934 1.18631 1.01940 0.90409 0.95060 1.21393 1.00238 0.94956 0.97746 1.21353 0.99219 0.94573 0.99342 1.21614 0.98202 1.01319 0.92325 1.21472 0.99023 0.93386 0.99753 1.21501 0.98317 0.96213 0.96776 1.22321 0.92346 0.93079 0.99174 0.89743 0.91695 0.90221 0.94995 0.94318 0.79770 0.94338 0.93250 0.88023 0.89758 0.81600 0.78676 0.86792 0.84737 0.83490 0.82753 0.83226 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.18 71.98 0.66 -2.58 16 2 C 0.13 4.32 2.79 44.99 0.13 4.45 16 3 H 0.07 2.85 6.91 -2.38 -0.02 2.83 16 4 C 0.14 5.59 5.56 86.38 0.48 6.07 16 5 N -0.74 -38.89 5.43 -343.46 -1.87 -40.76 16 6 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 9 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 10 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 14 N -0.59 -19.66 2.24 -825.98 -1.85 -21.51 16 15 C 0.07 1.89 8.00 127.77 1.02 2.91 16 16 C 0.56 21.65 7.08 86.79 0.61 22.27 16 17 O -0.58 -27.13 16.25 -3.88 -0.06 -27.19 16 18 C -0.18 -5.98 5.27 -20.02 -0.11 -6.09 16 19 C 0.14 4.32 10.79 85.05 0.92 5.24 16 20 N -0.49 -13.45 10.33 -193.92 -2.00 -15.45 16 21 C 0.13 2.92 10.59 84.98 0.90 3.82 16 22 C -0.10 -2.47 5.89 -19.98 -0.12 -2.59 16 23 C -0.06 -1.34 5.88 -20.04 -0.12 -1.46 16 24 C -0.13 -2.97 9.44 22.48 0.21 -2.76 16 25 C -0.13 -2.51 10.03 22.24 0.22 -2.28 16 26 C -0.12 -1.82 10.04 22.31 0.22 -1.59 16 27 C -0.12 -1.68 10.03 22.24 0.22 -1.46 16 28 C -0.11 -1.84 9.44 22.48 0.21 -1.63 16 29 C -0.04 -1.30 7.05 22.95 0.16 -1.14 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.48 6.66 -2.39 -0.02 1.47 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.40 7.84 -2.39 -0.02 1.39 16 35 H 0.37 21.71 7.06 -92.70 -0.65 21.05 16 36 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 37 H 0.05 1.46 6.87 -2.38 -0.02 1.45 16 38 H 0.10 2.05 6.44 -2.39 -0.02 2.03 16 39 H 0.08 1.89 5.83 -2.38 -0.01 1.87 16 40 H 0.17 4.82 8.05 -2.91 -0.02 4.80 16 41 H 0.20 2.87 6.21 -2.91 -0.02 2.85 16 42 H 0.11 2.90 6.27 -2.91 -0.02 2.88 16 43 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.15 1.65 6.23 -2.91 -0.02 1.63 16 47 H 0.15 4.49 3.55 -2.91 -0.01 4.48 16 Total: -1.00 -78.30 383.40 3.83 -74.47 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.36 Total: 38.98 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.94 Total: 4.33 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -5.44 Total: -139.50 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.30 3.83 -74.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698823435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.228 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds