Wall clock time and date at job start Tue Mar 31 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46661 * 2 1 4 4 C 1.52998 * 109.46951 * 240.00155 * 2 1 3 5 5 C 1.53002 * 109.46983 * 175.00015 * 4 2 1 6 6 N 1.46900 * 109.47279 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00086 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47126 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99871 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99738 * 179.97438 * 8 7 6 11 11 C 1.37105 * 119.99572 * 179.97438 * 10 8 7 12 12 H 1.07990 * 120.00363 * 0.02562 * 11 10 8 13 13 C 1.38951 * 119.99662 * 179.97438 * 11 10 8 14 14 N 1.31412 * 120.00065 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99791 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46983 * 120.00134 * 15 13 11 18 18 H 1.48498 * 109.46852 * 239.99990 * 15 13 11 19 19 N 1.46500 * 109.47134 * 119.99866 * 2 1 3 20 20 C 1.34779 * 119.99830 * 274.99783 * 19 2 1 21 21 O 1.21732 * 119.99815 * 354.66354 * 20 19 2 22 22 C 1.46374 * 119.99628 * 174.65760 * 20 19 2 23 23 C 1.36725 * 126.83017 * 4.96392 * 22 20 19 24 24 N 1.33219 * 107.96216 * 179.97438 * 23 22 20 25 25 C 1.31535 * 109.76749 * 0.02562 * 24 23 22 26 26 O 1.35201 * 125.49182 * 180.02562 * 25 24 23 27 27 N 1.34944 * 109.01084 * 359.75843 * 25 24 23 28 28 C 1.46505 * 126.54550 * 180.26557 * 27 25 24 29 29 H 1.08997 * 109.47290 * 60.00346 * 1 2 3 30 30 H 1.08998 * 109.46661 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46900 * 299.99886 * 1 2 3 32 32 H 1.08996 * 109.47016 * 294.99694 * 4 2 1 33 33 H 1.08992 * 109.47420 * 55.00029 * 4 2 1 34 34 H 1.09004 * 109.46850 * 299.99999 * 5 4 2 35 35 H 1.08997 * 109.47510 * 59.99239 * 5 4 2 36 36 H 1.00901 * 110.99138 * 303.94840 * 6 5 4 37 37 H 1.09002 * 109.46763 * 299.99342 * 7 6 5 38 38 H 1.09002 * 109.47549 * 59.99274 * 7 6 5 39 39 H 0.96998 * 120.00625 * 359.97438 * 10 8 7 40 40 H 0.97008 * 119.99757 * 179.97438 * 14 13 11 41 41 H 0.96995 * 120.00166 * 95.00413 * 19 2 1 42 42 H 1.08001 * 126.01357 * 359.94397 * 23 22 20 43 43 H 0.96701 * 114.00394 * 90.02704 * 26 25 24 44 44 H 1.08995 * 109.46894 * 273.51018 * 28 27 25 45 45 H 1.09003 * 109.46532 * 33.50614 * 28 27 25 46 46 H 1.08995 * 109.47010 * 153.50431 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0545 -1.3052 -2.5135 7 6 5.5181 -1.2226 -2.6084 8 6 5.9825 -1.9424 -3.8482 9 8 5.1738 -2.4725 -4.5805 10 7 7.2964 -1.9972 -4.1433 11 6 7.7189 -2.6525 -5.2711 12 1 6.9989 -3.1244 -5.9231 13 6 9.0734 -2.7085 -5.5756 14 7 9.9495 -2.1337 -4.7825 15 14 9.6492 -3.6020 -7.1118 16 1 8.4750 -4.1607 -7.8288 17 1 10.3648 -2.6502 -7.9990 18 1 10.5656 -4.7057 -6.7282 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0181 2.3571 21 8 1.9512 1.1829 2.3898 22 6 2.5224 -0.7321 3.5786 23 6 2.8650 -2.0515 3.6843 24 7 3.1366 -2.3042 4.9638 25 6 2.9824 -1.2091 5.6760 26 8 3.1756 -1.1067 7.0102 27 7 2.6059 -0.2030 4.8593 28 6 2.3350 1.1828 5.2499 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7714 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.8532 0.4371 -1.3573 35 1 3.9995 -1.0726 -0.4260 36 1 3.7451 -2.2655 -2.5285 37 1 5.8203 -0.1766 -2.6604 38 1 5.9660 -1.6870 -1.7298 39 1 7.9431 -1.5730 -3.5580 40 1 10.8952 -2.1732 -4.9949 41 1 2.2491 -1.6317 1.1527 42 1 2.9075 -2.7635 2.8733 43 1 4.0787 -0.8671 7.2596 44 1 1.2964 1.2743 5.5675 45 1 2.9926 1.4634 6.0727 46 1 2.5147 1.8415 4.4003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699124134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:59 Heat of formation + Delta-G solvation = -81.384055 kcal Electronic energy + Delta-G solvation = -28447.937108 eV Core-core repulsion = 24179.790996 eV Total energy + Delta-G solvation = -4268.146112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.34652 -40.70417 -40.12663 -38.41264 -37.90264 -36.32834 -35.72893 -35.11895 -33.29621 -33.01145 -30.58787 -29.78850 -28.10779 -27.77023 -25.81726 -24.69361 -23.23459 -22.76941 -21.81318 -21.38352 -21.02361 -19.89851 -19.71486 -18.57187 -17.82507 -17.66758 -17.40295 -16.94812 -16.71473 -16.46592 -16.04589 -15.88761 -15.62096 -15.34979 -15.16677 -15.05879 -14.90020 -14.65261 -14.25004 -13.82742 -13.76833 -13.70703 -13.54432 -13.46971 -13.22683 -13.20145 -12.92357 -12.77710 -12.40203 -12.23280 -12.11334 -12.01551 -11.76729 -11.50472 -11.42947 -11.01648 -10.91855 -10.35876 -10.20381 -10.00820 -9.58537 -9.28643 -8.46192 -5.94881 0.06784 1.09973 1.37492 1.42850 1.50499 1.57137 2.06046 2.20128 2.22007 2.29868 2.78840 2.91437 3.21278 3.50019 3.57052 3.77730 3.90044 3.94251 4.05548 4.22854 4.25447 4.29497 4.33247 4.47214 4.49511 4.55814 4.59254 4.64081 4.73107 4.83702 4.91376 4.99763 5.10978 5.24051 5.29911 5.35179 5.42110 5.50793 5.52366 5.90628 6.12063 6.39733 6.47744 6.53786 6.60636 6.67741 7.09258 7.13353 7.57157 8.12084 8.71438 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.001878 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.828663 B =14902.442020 C =16213.080622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.079 0.921 4 C -0.114 4.114 5 C 0.061 3.939 6 N -0.682 5.682 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.575 5.575 11 C -0.332 4.332 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.921 5.921 15 Si 0.993 3.007 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.271 1.271 19 N -0.698 5.698 20 C 0.600 3.400 21 O -0.575 6.575 22 C -0.098 4.098 23 C 0.061 3.939 24 N -0.520 5.520 25 C 0.398 3.602 26 O -0.443 6.443 27 N -0.432 5.432 28 C 0.063 3.937 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.347 0.653 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.415 0.585 42 H 0.212 0.788 43 H 0.428 0.572 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 6.027 22.825 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.068 4.068 6 N -0.315 5.315 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.212 5.212 11 C -0.462 4.462 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.197 1.197 18 H -0.196 1.196 19 N -0.349 5.349 20 C 0.387 3.613 21 O -0.456 6.456 22 C -0.214 4.214 23 C -0.094 4.094 24 N -0.249 5.249 25 C 0.099 3.901 26 O -0.247 6.247 27 N -0.124 5.124 28 C -0.078 4.078 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.166 0.834 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.228 0.772 43 H 0.289 0.711 44 H 0.104 0.896 45 H 0.131 0.869 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.009 6.391 22.485 28.332 hybrid contribution 1.494 -0.163 0.125 1.508 sum -14.515 6.228 22.610 27.581 Atomic orbital electron populations 1.22121 0.93957 1.03073 1.02412 1.20947 0.94596 0.96999 0.82641 0.90332 1.21782 0.94025 1.02348 0.97076 1.22037 0.95755 0.99131 0.89865 1.60063 1.08362 1.21980 1.41103 1.21518 0.89949 1.01118 0.94195 1.20895 0.82310 0.84776 0.89472 1.90486 1.54126 1.52047 1.54164 1.41959 1.06382 1.49248 1.23601 1.19713 0.92336 1.31855 1.02286 0.90222 1.26060 0.95226 0.98157 1.02000 1.69683 1.02914 1.44608 1.39030 0.84861 0.78068 0.77990 0.77365 1.19693 1.19718 1.19585 1.45680 1.66221 1.14727 1.08307 1.16666 0.76401 0.85732 0.82517 1.90788 1.53313 1.15202 1.86344 1.20632 1.18933 0.95944 0.85873 1.23044 0.99086 0.93059 0.94203 1.70333 1.24129 1.25558 1.04902 1.20386 1.01696 0.83417 0.84633 1.84782 1.38273 1.90527 1.11135 1.45825 1.48966 1.11276 1.06362 1.22437 1.03979 0.77492 1.03884 0.90317 0.91083 0.93614 0.89628 0.89191 0.91494 0.94127 0.83415 0.88314 0.91580 0.77022 0.91332 0.74805 0.77156 0.71054 0.89589 0.86895 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 71.98 0.68 -1.37 16 2 C 0.15 2.21 2.62 44.99 0.12 2.33 16 3 H 0.08 1.44 7.50 -2.39 -0.02 1.42 16 4 C -0.11 -1.71 5.01 30.59 0.15 -1.55 16 5 C 0.06 1.22 5.57 86.30 0.48 1.70 16 6 N -0.68 -19.75 6.13 -517.92 -3.17 -22.92 16 7 C 0.06 2.15 6.17 85.56 0.53 2.68 16 8 C 0.44 20.56 7.82 87.66 0.69 21.25 16 9 O -0.62 -33.95 15.78 -3.05 -0.05 -34.00 16 10 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 11 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 12 H 0.08 4.81 7.16 -2.92 -0.02 4.79 16 13 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 14 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 15 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 N -0.70 -9.51 4.52 -446.77 -2.02 -11.52 16 20 C 0.60 11.26 7.73 86.36 0.67 11.93 16 21 O -0.58 -14.12 14.44 -4.45 -0.06 -14.18 16 22 C -0.10 -1.75 6.92 39.80 0.28 -1.48 16 23 C 0.06 1.00 11.36 84.13 0.96 1.96 16 24 N -0.52 -10.70 11.22 -313.66 -3.52 -14.21 16 25 C 0.40 6.98 9.01 179.99 1.62 8.60 16 26 O -0.44 -5.28 13.53 -84.82 -1.15 -6.43 16 27 N -0.43 -7.25 3.20 -652.00 -2.09 -9.34 16 28 C 0.06 0.75 10.77 127.77 1.38 2.12 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.04 0.72 7.75 -2.39 -0.02 0.70 16 36 H 0.35 10.22 8.43 -89.69 -0.76 9.47 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 40 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 41 H 0.41 3.70 7.53 -92.71 -0.70 3.01 16 42 H 0.21 1.97 7.45 -2.91 -0.02 1.95 16 43 H 0.43 0.53 9.06 -74.06 -0.67 -0.14 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 1.47 6.25 -2.39 -0.01 1.46 16 Total: -1.00 -79.01 394.43 -4.34 -83.35 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -1.80 Total: 34.99 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 8.83 Total: 29.83 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -12.14 Total: -138.38 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -1.26 Total: -54.62 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -79.01 -4.34 -83.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699124134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.968 kcal (2) G-P(sol) polarization free energy of solvation -79.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds