Wall clock time and date at job start Tue Mar 31 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 C 1.52997 * 109.47357 * 119.99884 * 2 1 3 5 5 C 1.52994 * 109.47433 * 184.99962 * 4 2 1 6 6 N 1.46903 * 109.47209 * 180.02562 * 5 4 2 7 7 C 1.46898 * 110.99932 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47076 * 179.97438 * 7 6 5 9 9 O 1.21290 * 120.00297 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99982 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00226 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99799 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00097 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00005 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00410 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46872 * 89.99564 * 15 13 11 17 17 H 1.48501 * 109.47337 * 209.99523 * 15 13 11 18 18 H 1.48496 * 109.46850 * 329.99889 * 15 13 11 19 19 N 1.46502 * 109.47101 * 240.00227 * 2 1 3 20 20 C 1.34774 * 120.00047 * 84.99915 * 19 2 1 21 21 O 1.21735 * 120.00260 * 354.46498 * 20 19 2 22 22 C 1.46381 * 120.00052 * 174.46376 * 20 19 2 23 23 C 1.36726 * 126.82365 * 5.08285 * 22 20 19 24 24 N 1.33224 * 107.96233 * 179.86663 * 23 22 20 25 25 C 1.31542 * 109.75815 * 0.40798 * 24 23 22 26 26 O 1.35203 * 125.49043 * 179.77062 * 25 24 23 27 27 N 1.34942 * 109.01445 * 359.74482 * 25 24 23 28 28 C 1.46504 * 126.53991 * 179.97438 * 27 25 24 29 29 H 1.08998 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46955 * 299.99681 * 1 2 3 31 31 H 1.08998 * 109.46914 * 59.99758 * 1 2 3 32 32 H 1.09005 * 109.46681 * 65.00142 * 4 2 1 33 33 H 1.09000 * 109.47168 * 305.00442 * 4 2 1 34 34 H 1.09002 * 109.47165 * 59.99897 * 5 4 2 35 35 H 1.09000 * 109.47335 * 300.00378 * 5 4 2 36 36 H 1.00898 * 110.99881 * 303.95511 * 6 5 4 37 37 H 1.08995 * 109.47689 * 300.00516 * 7 6 5 38 38 H 1.09009 * 109.47056 * 60.00038 * 7 6 5 39 39 H 0.96999 * 120.00132 * 0.02562 * 10 8 7 40 40 H 0.97000 * 120.00909 * 180.02562 * 14 13 11 41 41 H 0.97002 * 119.99754 * 264.99578 * 19 2 1 42 42 H 1.07993 * 126.01761 * 359.97438 * 23 22 20 43 43 H 0.96705 * 114.00054 * 269.97662 * 26 25 24 44 44 H 1.09001 * 109.46872 * 269.57460 * 28 27 25 45 45 H 1.08990 * 109.47311 * 29.57535 * 28 27 25 46 46 H 1.09001 * 109.47305 * 149.58145 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0546 -1.3063 2.5128 7 6 5.5182 -1.2238 2.6077 8 6 5.9826 -1.9436 3.8475 9 8 5.1739 -2.4736 4.5798 10 7 7.2965 -1.9984 4.1426 11 6 7.7190 -2.6528 5.2709 12 1 6.9989 -3.1247 5.9229 13 6 9.0735 -2.7097 5.5748 14 7 9.4785 -3.3374 6.6560 15 14 10.3191 -1.8940 4.4467 16 1 10.5346 -0.4901 4.8801 17 1 11.6046 -2.6347 4.5107 18 1 9.8082 -1.9087 3.0525 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0182 -2.3571 21 8 1.7637 1.1343 -2.4388 22 6 2.7479 -0.6737 -3.5199 23 6 3.1349 -1.9817 -3.6142 24 7 3.6298 -2.1767 -4.8356 25 6 3.5838 -1.0535 -5.5186 26 8 4.0087 -0.8910 -6.7918 27 7 3.0436 -0.0896 -4.7439 28 6 2.8138 1.3069 -5.1222 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -1.7715 1.2055 33 1 1.6054 -0.2617 2.1369 34 1 3.8532 0.4370 1.3573 35 1 3.9995 -1.0727 0.4259 36 1 3.6168 -0.9414 3.3454 37 1 5.9660 -1.6873 1.7287 38 1 5.8205 -0.1778 2.6605 39 1 7.9432 -1.5742 3.5572 40 1 10.4242 -3.3769 6.8685 41 1 2.2491 -1.6317 -1.1526 42 1 3.0521 -2.7261 -2.8362 43 1 4.9370 -0.6306 -6.8665 44 1 3.6898 1.9020 -4.8644 45 1 2.6362 1.3680 -6.1959 46 1 1.9444 1.6898 -4.5878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699124137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:03 Heat of formation + Delta-G solvation = -76.505058 kcal Electronic energy + Delta-G solvation = -28577.014675 eV Core-core repulsion = 24309.080132 eV Total energy + Delta-G solvation = -4267.934543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.32774 -40.69016 -40.26609 -38.39765 -37.89861 -36.34125 -35.76441 -35.10781 -33.74255 -33.03801 -30.64127 -29.77100 -28.08998 -27.86301 -25.64441 -24.64164 -23.22135 -22.76058 -21.79385 -21.36390 -21.24160 -20.24719 -19.68392 -18.52592 -17.82911 -17.67283 -17.39243 -17.06274 -16.72358 -16.58444 -15.86385 -15.79374 -15.64206 -15.29835 -15.17081 -15.09218 -14.75908 -14.60831 -14.46534 -14.05372 -13.89707 -13.76069 -13.71256 -13.52440 -13.21517 -13.19431 -12.94744 -12.79000 -12.40872 -12.19556 -12.07356 -11.96819 -11.73104 -11.50409 -11.42436 -10.99699 -10.89648 -10.42941 -10.24041 -10.20495 -9.56179 -9.30640 -8.40432 -6.01276 0.08852 1.09732 1.30952 1.35894 1.45094 1.54087 1.96836 2.19029 2.23606 2.25841 2.72634 2.80989 3.16139 3.38166 3.57852 3.79204 3.92313 3.98090 4.07195 4.13264 4.21702 4.26131 4.31807 4.42735 4.52758 4.52996 4.60498 4.64700 4.74095 4.85227 4.91932 4.97193 5.11128 5.26283 5.31996 5.36659 5.51584 5.53332 5.54044 5.92079 6.06969 6.41035 6.43741 6.55277 6.60647 6.69702 6.89114 7.10736 7.40882 7.97329 8.77161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.002130 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.132976 B =13139.339829 C =14827.073263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.061 3.939 6 N -0.684 5.684 7 C 0.062 3.938 8 C 0.448 3.552 9 O -0.613 6.613 10 N -0.592 5.592 11 C -0.328 4.328 12 H 0.056 0.944 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.257 1.257 17 H -0.276 1.276 18 H -0.231 1.231 19 N -0.698 5.698 20 C 0.600 3.400 21 O -0.575 6.575 22 C -0.097 4.097 23 C 0.061 3.939 24 N -0.520 5.520 25 C 0.398 3.602 26 O -0.443 6.443 27 N -0.432 5.432 28 C 0.064 3.936 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.345 0.655 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.415 0.585 42 H 0.212 0.788 43 H 0.428 0.572 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 12.345 -27.974 33.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.317 5.317 7 C -0.071 4.071 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.234 5.234 11 C -0.457 4.457 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.182 1.182 17 H -0.201 1.201 18 H -0.154 1.154 19 N -0.349 5.349 20 C 0.387 3.613 21 O -0.456 6.456 22 C -0.213 4.213 23 C -0.094 4.094 24 N -0.250 5.250 25 C 0.098 3.902 26 O -0.248 6.248 27 N -0.125 5.125 28 C -0.077 4.077 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.228 0.772 43 H 0.290 0.710 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.621 11.457 -28.323 33.452 hybrid contribution 1.383 1.472 0.557 2.095 sum -12.239 12.929 -27.766 32.983 Atomic orbital electron populations 1.22125 0.94261 1.02931 1.02420 1.20929 0.94549 0.96683 0.82712 0.90324 1.21803 0.94178 1.02526 0.96988 1.22054 0.95777 0.96143 0.92807 1.60081 1.03699 1.61341 1.06557 1.21622 0.90539 0.99406 0.95517 1.21013 0.81969 0.84335 0.89054 1.90542 1.54226 1.50991 1.53996 1.42052 1.07119 1.50873 1.23337 1.19010 0.93177 1.32154 1.01383 0.92596 1.26117 0.99133 0.97652 0.98554 1.69802 1.17277 1.43354 1.27080 0.85369 0.77693 0.78925 0.79563 1.18189 1.20094 1.15439 1.45696 1.66262 1.14704 1.08280 1.16649 0.77574 0.84973 0.82080 1.90793 1.51823 1.18703 1.84307 1.20635 1.16235 0.95751 0.88700 1.23057 0.97799 0.93866 0.94662 1.70342 1.24218 1.24146 1.06244 1.20379 1.00104 0.83862 0.85819 1.84765 1.35471 1.89660 1.14891 1.45816 1.44901 1.11537 1.10221 1.22416 1.04934 0.76768 1.03608 0.91342 0.90402 0.93526 0.89602 0.89403 0.94834 0.90138 0.83643 0.86938 0.90876 0.77511 0.91163 0.74704 0.77167 0.71021 0.88840 0.87355 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 71.98 0.68 -1.31 16 2 C 0.16 2.04 2.53 44.99 0.11 2.16 16 3 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 4 C -0.12 -1.56 5.01 30.59 0.15 -1.41 16 5 C 0.06 1.05 5.57 86.30 0.48 1.53 16 6 N -0.68 -17.99 6.13 -517.93 -3.17 -21.17 16 7 C 0.06 1.78 6.17 85.56 0.53 2.31 16 8 C 0.45 19.75 7.82 87.66 0.69 20.44 16 9 O -0.61 -33.32 15.78 -3.06 -0.05 -33.37 16 10 N -0.59 -27.52 5.09 -306.99 -1.56 -29.09 16 11 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 12 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 13 C -0.02 -0.88 5.50 84.92 0.47 -0.42 16 14 N -0.93 -56.15 13.96 21.66 0.30 -55.84 16 15 Si 0.96 38.43 27.74 68.60 1.90 40.33 16 16 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 17 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 18 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 19 N -0.70 -8.83 4.52 -446.76 -2.02 -10.85 16 20 C 0.60 10.58 7.73 86.36 0.67 11.25 16 21 O -0.58 -13.32 14.54 -4.46 -0.06 -13.39 16 22 C -0.10 -1.66 6.92 39.80 0.28 -1.38 16 23 C 0.06 0.97 11.36 84.13 0.96 1.93 16 24 N -0.52 -10.48 11.22 -313.65 -3.52 -14.00 16 25 C 0.40 6.76 9.01 179.99 1.62 8.38 16 26 O -0.44 -5.10 13.52 -84.84 -1.15 -6.24 16 27 N -0.43 -6.94 3.20 -652.00 -2.09 -9.03 16 28 C 0.06 0.70 10.69 127.77 1.37 2.07 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.75 8.07 -2.39 -0.02 0.73 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 1.26 7.75 -2.39 -0.02 1.25 16 36 H 0.34 9.76 8.43 -89.70 -0.76 9.01 16 37 H 0.11 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.39 14.93 5.76 -92.71 -0.53 14.40 16 40 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.42 3.55 7.53 -92.71 -0.70 2.85 16 42 H 0.21 1.91 7.45 -2.91 -0.02 1.89 16 43 H 0.43 0.38 9.06 -74.05 -0.67 -0.29 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.11 0.74 8.12 -2.39 -0.02 0.72 16 46 H 0.09 1.35 6.43 -2.39 -0.02 1.34 16 Total: -1.00 -86.35 391.47 -4.22 -90.57 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.66 Total: 34.77 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 8.85 Total: 27.30 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -12.06 Total: -139.98 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.26 Total: -53.00 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -86.35 -4.22 -90.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699124137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.065 kcal (2) G-P(sol) polarization free energy of solvation -86.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds