Wall clock time and date at job start Tue Mar 31 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47106 * 2 1 4 4 C 1.53000 * 109.47045 * 119.99650 * 2 1 3 5 5 C 1.52995 * 109.47084 * 184.99675 * 4 2 1 6 6 N 1.46510 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.36935 * 119.99898 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00277 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99636 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00418 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00013 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47349 * 89.99880 * 11 9 7 13 13 H 1.48506 * 109.47405 * 210.00424 * 11 9 7 14 14 H 1.48502 * 109.47091 * 329.99631 * 11 9 7 15 15 N 1.46505 * 109.47420 * 239.99867 * 2 1 3 16 16 C 1.34776 * 119.99691 * 85.00064 * 15 2 1 17 17 O 1.21571 * 120.00323 * 359.97438 * 16 15 2 18 18 C 1.47705 * 119.99721 * 180.02562 * 16 15 2 19 19 C 1.40195 * 120.46169 * 179.97438 * 18 16 15 20 20 C 1.38040 * 118.38586 * 179.74791 * 19 18 16 21 21 C 1.39508 * 119.21493 * 0.53866 * 20 19 18 22 22 C 1.48226 * 119.57372 * 179.72224 * 21 20 19 23 23 C 1.39424 * 120.13057 * 179.72664 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32776 * 120.85712 * 359.45121 * 21 20 19 29 29 C 1.31518 * 121.76752 * 0.27760 * 28 21 20 30 30 H 1.08993 * 109.47127 * 300.00639 * 1 2 3 31 31 H 1.08998 * 109.46607 * 60.00030 * 1 2 3 32 32 H 1.08994 * 109.46873 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47063 * 305.00368 * 4 2 1 34 34 H 1.09007 * 109.46986 * 65.00388 * 4 2 1 35 35 H 1.08999 * 109.47736 * 300.00281 * 5 4 2 36 36 H 1.09004 * 109.47237 * 60.00919 * 5 4 2 37 37 H 0.96998 * 119.99311 * 0.02562 * 6 5 4 38 38 H 0.96996 * 120.00247 * 179.97438 * 10 9 7 39 39 H 0.96993 * 120.00081 * 265.00310 * 15 2 1 40 40 H 1.08003 * 120.80613 * 0.04992 * 19 18 16 41 41 H 1.07998 * 120.39299 * 180.28269 * 20 19 18 42 42 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 43 43 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 44 44 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.65025 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3044 2.5097 7 6 5.3952 -1.3404 2.7795 8 1 6.0936 -0.8590 2.1110 9 6 5.8579 -1.9957 3.9123 10 7 5.0069 -2.5828 4.7269 11 14 7.6885 -2.0443 4.2809 12 1 8.0574 -0.8705 5.1124 13 1 8.0126 -3.2932 5.0161 14 1 8.4511 -2.0079 3.0072 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3571 17 8 1.8576 1.1612 -2.4119 18 6 2.6391 -0.7147 -3.5632 19 6 2.7762 -0.0249 -4.7760 20 6 3.2447 -0.7164 -5.8750 21 6 3.5531 -2.0709 -5.7465 22 6 4.0509 -2.8227 -6.9230 23 6 4.3679 -4.1754 -6.8062 24 6 4.8304 -4.8701 -7.9052 25 6 4.9802 -4.2269 -9.1207 26 6 4.6673 -2.8850 -9.2426 27 6 4.2039 -2.1799 -8.1508 28 7 3.4114 -2.6942 -4.5827 29 6 2.9734 -2.0694 -3.5115 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -0.2616 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4260 36 1 3.8532 0.4370 1.3574 37 1 3.4258 -1.7364 3.1102 38 1 5.3303 -3.0410 5.5183 39 1 2.2491 -1.6317 -1.1526 40 1 2.5261 1.0233 -4.8475 41 1 3.3672 -0.2158 -6.8241 42 1 4.2510 -4.6787 -5.8579 43 1 5.0806 -5.9170 -7.8149 44 1 5.3422 -4.7749 -9.9782 45 1 4.7858 -2.3883 -10.1942 46 1 3.9595 -1.1323 -8.2472 47 1 2.8708 -2.6100 -2.5822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699153271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:35 Heat of formation + Delta-G solvation = 29.138535 kcal Electronic energy + Delta-G solvation = -27367.156621 eV Core-core repulsion = 23514.652391 eV Total energy + Delta-G solvation = -3852.504230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98919 -39.72939 -38.76063 -36.57522 -34.41313 -33.44876 -32.89171 -31.95299 -31.23098 -30.83221 -29.43554 -27.89057 -25.25879 -24.33034 -23.96761 -22.49578 -22.20845 -21.57511 -20.91847 -20.51379 -18.40513 -17.62365 -17.13506 -16.84091 -16.45605 -15.91231 -15.25997 -15.02033 -14.89704 -14.71079 -14.67583 -14.25944 -14.00664 -13.82413 -13.72397 -13.49322 -13.39979 -13.26039 -12.96454 -12.88244 -12.64018 -12.41189 -11.89252 -11.66338 -11.45346 -11.23222 -11.04506 -10.80974 -10.66639 -10.59032 -10.29720 -10.28173 -10.08142 -10.05115 -9.71183 -9.67389 -9.31564 -9.11011 -8.87293 -8.60606 -6.93422 -5.77412 -3.06242 -0.05602 0.91822 1.04561 1.22059 2.72850 3.05670 3.37580 3.43662 3.48866 3.50428 3.66570 3.77158 4.19028 4.47186 4.50717 4.56128 4.57218 4.64059 4.65308 4.77781 4.91448 4.96958 5.08517 5.19963 5.22143 5.23646 5.32704 5.47807 5.54310 5.61342 5.69235 5.72510 5.74507 5.75038 5.90729 5.99981 6.01685 6.12199 6.17370 6.21059 6.25437 6.26497 6.31511 6.46962 6.57577 6.79211 6.83909 7.43341 7.52850 7.69748 8.11519 8.41596 9.52771 10.10030 10.44773 11.45434 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.002317 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.771472 B =12082.146675 C =14266.612291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.712 5.712 16 C 0.564 3.436 17 O -0.538 6.538 18 C -0.187 4.187 19 C -0.013 4.013 20 C -0.172 4.172 21 C 0.188 3.812 22 C -0.056 4.056 23 C -0.075 4.075 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.098 4.098 28 N -0.479 5.479 29 C 0.146 3.854 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.401 0.599 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -0.500 -28.073 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.174 4.174 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.363 5.363 16 C 0.350 3.650 17 O -0.417 6.417 18 C -0.192 4.192 19 C -0.039 4.039 20 C -0.192 4.192 21 C 0.053 3.947 22 C -0.057 4.057 23 C -0.093 4.093 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.116 4.116 28 N -0.188 5.188 29 C -0.014 4.014 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.141 -0.510 -28.013 28.913 hybrid contribution 0.776 0.200 0.532 0.962 sum -6.365 -0.310 -27.481 28.210 Atomic orbital electron populations 1.22163 0.95244 1.02124 1.02411 1.21040 0.93679 0.97772 0.83427 0.89111 1.22080 0.98101 1.00860 0.96343 1.20641 0.90322 0.95681 0.90786 1.42360 1.05391 1.64909 1.25121 1.19223 0.83834 1.28427 1.05551 0.91264 1.24744 0.97737 1.00873 0.97685 1.69656 1.32795 1.40619 1.15184 0.86188 0.85075 0.77039 0.77894 1.21697 1.21731 1.20757 1.46056 1.66491 1.14212 1.09540 1.17939 0.77717 0.86439 0.82860 1.90771 1.50557 1.15334 1.84996 1.21097 1.06409 0.96019 0.95720 1.21661 0.91077 1.00794 0.90354 1.22050 1.02195 0.94722 1.00247 1.19969 0.92963 0.90500 0.91293 1.18530 1.01837 0.93906 0.91424 1.21419 0.95392 0.93146 0.99389 1.21209 1.00065 1.00360 0.92838 1.21329 0.98625 0.94852 0.97747 1.21067 1.00089 0.94630 0.98595 1.21264 0.98528 1.00013 0.91844 1.67629 1.13557 1.38945 0.98623 1.22989 0.91038 0.90611 0.96722 0.91355 0.92383 0.92430 0.90044 0.91258 0.96433 0.96384 0.78299 0.93513 0.76342 0.83217 0.83866 0.84446 0.85535 0.85836 0.85587 0.85437 0.81905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 2 C 0.15 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 C -0.14 -2.03 4.87 -26.73 -0.13 -2.16 16 5 C 0.15 3.03 6.15 -4.04 -0.02 3.01 16 6 N -0.73 -18.52 5.60 -59.90 -0.34 -18.85 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 11 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 N -0.71 -8.76 4.48 -54.79 -0.25 -9.01 16 16 C 0.56 7.60 7.74 -12.39 -0.10 7.51 16 17 O -0.54 -8.80 16.07 5.30 0.09 -8.72 16 18 C -0.19 -2.19 5.89 -104.78 -0.62 -2.81 16 19 C -0.01 -0.13 9.70 -38.92 -0.38 -0.51 16 20 C -0.17 -1.58 9.44 -39.18 -0.37 -1.95 16 21 C 0.19 2.01 6.73 -82.88 -0.56 1.45 16 22 C -0.06 -0.54 5.88 -104.91 -0.62 -1.15 16 23 C -0.07 -0.70 9.57 -39.23 -0.38 -1.07 16 24 C -0.13 -0.96 10.03 -39.63 -0.40 -1.36 16 25 C -0.11 -0.71 10.04 -39.51 -0.40 -1.10 16 26 C -0.13 -0.82 10.03 -39.64 -0.40 -1.22 16 27 C -0.10 -0.73 9.42 -39.23 -0.37 -1.10 16 28 N -0.48 -5.65 9.40 -9.45 -0.09 -5.74 16 29 C 0.15 1.62 10.70 -17.17 -0.18 1.44 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.40 4.26 6.65 -40.82 -0.27 3.99 16 40 H 0.15 1.42 7.73 -52.48 -0.41 1.02 16 41 H 0.14 0.88 6.17 -52.49 -0.32 0.55 16 42 H 0.14 1.32 7.53 -52.49 -0.40 0.92 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.68 6.17 -52.48 -0.32 0.36 16 47 H 0.16 1.48 6.41 -52.49 -0.34 1.15 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -34.36 396.05 -10.41 -44.77 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.52 Total: 9.74 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -4.98 Total: -8.20 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.05 Total: -61.14 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.36 -10.41 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699153271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.905 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds