Wall clock time and date at job start Tue Mar 31 2020 22:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.52997 * 109.47027 * 239.99588 * 2 1 3 5 5 C 1.53000 * 109.46909 * 175.00027 * 4 2 1 6 6 N 1.46497 * 109.47222 * 179.97438 * 5 4 2 7 7 C 1.36936 * 120.00079 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00104 * 0.02562 * 7 6 5 9 9 C 1.38821 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99604 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46847 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46917 * 119.99976 * 11 9 7 14 14 H 1.48497 * 109.47163 * 240.00255 * 11 9 7 15 15 N 1.46505 * 109.46806 * 119.99811 * 2 1 3 16 16 C 1.34776 * 119.99667 * 275.00139 * 15 2 1 17 17 O 1.21571 * 120.00330 * 359.97438 * 16 15 2 18 18 C 1.47715 * 119.99688 * 180.02562 * 16 15 2 19 19 C 1.40190 * 120.45780 * 179.97438 * 18 16 15 20 20 C 1.38040 * 118.38211 * 179.74883 * 19 18 16 21 21 C 1.39508 * 119.21525 * 0.51591 * 20 19 18 22 22 C 1.48226 * 119.57366 * 179.75049 * 21 20 19 23 23 C 1.39424 * 120.13053 * 179.72672 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 359.97438 * 24 23 22 26 26 C 1.38332 * 120.26307 * 0.02562 * 25 24 23 27 27 C 1.37988 * 120.13062 * 359.97438 * 26 25 24 28 28 N 1.32776 * 120.85711 * 359.47023 * 21 20 19 29 29 C 1.31518 * 121.76752 * 0.28239 * 28 21 20 30 30 H 1.09001 * 109.47236 * 300.00465 * 1 2 3 31 31 H 1.09004 * 109.46758 * 60.00255 * 1 2 3 32 32 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47449 * 294.99884 * 4 2 1 34 34 H 1.08997 * 109.47024 * 55.00546 * 4 2 1 35 35 H 1.09002 * 109.47620 * 300.00499 * 5 4 2 36 36 H 1.09007 * 109.46813 * 60.00451 * 5 4 2 37 37 H 0.97001 * 120.00447 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99273 * 180.02562 * 10 9 7 39 39 H 0.97001 * 119.99792 * 94.99676 * 15 2 1 40 40 H 1.08003 * 120.80974 * 0.02880 * 19 18 16 41 41 H 1.08004 * 120.39723 * 180.28517 * 20 19 18 42 42 H 1.07996 * 120.06778 * 0.02562 * 23 22 21 43 43 H 1.08008 * 119.93430 * 179.72131 * 24 23 22 44 44 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 45 45 H 1.08000 * 119.93248 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.65039 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3045 -2.5093 7 6 5.3954 -1.3414 -2.7787 8 1 6.0938 -0.8614 -2.1093 9 6 5.8582 -1.9960 -3.9120 10 7 5.0068 -2.5806 -4.7280 11 14 7.6891 -2.0469 -4.2790 12 1 8.4275 -1.3197 -3.2155 13 1 8.1460 -3.4592 -4.3226 14 1 7.9490 -1.4018 -5.5911 15 7 2.0183 -0.6906 1.1963 16 6 2.1469 -0.0182 2.3572 17 8 1.8582 1.1615 2.4116 18 6 2.6398 -0.7143 3.5632 19 6 2.7778 -0.0242 4.7756 20 6 3.2372 -0.7180 5.8770 21 6 3.5567 -2.0696 5.7457 22 6 4.0559 -2.8209 6.9218 23 6 4.3734 -4.1735 6.8051 24 6 4.8382 -4.8676 7.9035 25 6 4.9899 -4.2238 9.1185 26 6 4.6766 -2.8820 9.2404 27 6 4.2109 -2.1775 8.1491 28 7 3.4143 -2.6931 4.5821 29 6 2.9751 -2.0687 3.5112 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1369 35 1 3.8533 0.4369 -1.3572 36 1 3.9994 -1.0729 -0.4258 37 1 3.4260 -1.7361 -3.1104 38 1 5.3303 -3.0383 -5.5198 39 1 2.2489 -1.6318 1.1527 40 1 2.5265 1.0238 4.8473 41 1 3.3514 -0.2195 6.8283 42 1 4.2565 -4.6768 5.8568 43 1 5.0802 -5.9165 7.8154 44 1 5.3545 -4.7711 9.9753 45 1 4.7975 -2.3846 10.1914 46 1 3.9670 -1.1298 8.2453 47 1 2.8727 -2.6093 2.5819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699153273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:37 Heat of formation + Delta-G solvation = 8.303364 kcal Electronic energy + Delta-G solvation = -27368.350739 eV Core-core repulsion = 23514.943028 eV Total energy + Delta-G solvation = -3853.407711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.84027 -40.62182 -39.46429 -37.88574 -36.14989 -34.30706 -33.72833 -33.44497 -32.20753 -31.79183 -30.25840 -29.39947 -26.16806 -25.74032 -25.04551 -23.50269 -23.03701 -22.72893 -21.99675 -21.54506 -19.45479 -18.99090 -18.32675 -17.84210 -17.05730 -16.93691 -16.70034 -16.20595 -15.90549 -15.55430 -15.49439 -15.34730 -15.24412 -15.10090 -15.01488 -14.62963 -14.33214 -14.29492 -14.07163 -13.69297 -13.50319 -13.38796 -13.11535 -12.92383 -12.89831 -12.40665 -12.24781 -12.20464 -12.00884 -12.00172 -11.94123 -11.65697 -11.29416 -11.11840 -10.97211 -10.81079 -10.55817 -10.17338 -9.86962 -9.29140 -9.02194 -7.97945 -5.26634 -0.82849 0.13324 0.49149 0.54618 1.45923 1.46325 1.56533 1.78803 2.05588 2.53642 2.64030 2.93663 3.06195 3.35755 3.47643 3.57372 3.66844 3.74186 3.88493 4.01426 4.04906 4.13116 4.15294 4.17559 4.31091 4.38080 4.50010 4.55820 4.58778 4.63668 4.64503 4.76430 4.82074 4.84940 4.94212 5.00975 5.03315 5.16562 5.19229 5.26616 5.32843 5.37205 5.47000 5.50472 5.55681 5.57734 5.61761 6.04139 6.25068 6.42578 6.72861 7.08684 7.31625 8.06746 8.30858 9.25452 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.002318 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.013933 B =12075.804908 C =14263.944695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.073 0.927 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.745 5.745 7 C -0.246 4.246 8 H 0.070 0.930 9 C -0.074 4.074 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.292 1.292 15 N -0.707 5.707 16 C 0.566 3.434 17 O -0.572 6.572 18 C -0.203 4.203 19 C -0.017 4.017 20 C -0.165 4.165 21 C 0.180 3.820 22 C -0.080 4.080 23 C -0.095 4.095 24 C -0.135 4.135 25 C -0.106 4.106 26 C -0.127 4.127 27 C -0.099 4.099 28 N -0.501 5.501 29 C 0.143 3.857 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.008 0.992 36 H 0.022 0.978 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.409 0.591 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.123 0.877 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.149 0.851 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -0.475 30.489 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.091 0.909 4 C -0.158 4.158 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.378 4.378 8 H 0.088 0.912 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.219 1.219 15 N -0.358 5.358 16 C 0.353 3.647 17 O -0.453 6.453 18 C -0.208 4.208 19 C -0.043 4.043 20 C -0.184 4.184 21 C 0.045 3.955 22 C -0.081 4.081 23 C -0.114 4.114 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.145 4.145 27 C -0.118 4.118 28 N -0.210 5.210 29 C -0.017 4.017 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.247 0.753 40 H 0.175 0.825 41 H 0.193 0.807 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.167 0.833 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.779 -0.473 30.461 31.210 hybrid contribution 0.677 0.162 -1.137 1.333 sum -6.103 -0.312 29.324 29.954 Atomic orbital electron populations 1.22089 0.93318 1.03080 1.02641 1.20898 0.95037 0.96525 0.82809 0.90855 1.21915 0.94509 1.01886 0.97445 1.20776 0.93570 0.94240 0.88801 1.42553 1.04459 1.65245 1.26519 1.19613 0.85299 1.27615 1.05309 0.91204 1.25552 1.01976 1.01259 0.97838 1.69809 1.34448 1.41876 1.15550 0.85103 0.80201 0.77093 0.77547 1.19416 1.21713 1.21864 1.46019 1.66113 1.14588 1.09115 1.18180 0.77056 0.86039 0.83403 1.90746 1.52280 1.16698 1.85555 1.21010 1.07853 0.96354 0.95571 1.21849 0.90922 1.01184 0.90310 1.22329 1.00941 0.94089 1.01077 1.20363 0.92426 0.91341 0.91346 1.18684 1.03314 0.94155 0.91972 1.21462 0.96697 0.93611 0.99642 1.21438 0.99872 1.01161 0.92852 1.21705 0.97504 0.95244 0.97993 1.21462 0.98929 0.94694 0.99404 1.21559 0.97898 1.01132 0.91196 1.67655 1.14477 1.39540 0.99321 1.23164 0.90812 0.90526 0.97177 0.92995 0.90276 0.91097 0.90147 0.89778 0.97429 0.96049 0.79160 0.93887 0.75328 0.82546 0.80664 0.85851 0.84151 0.83307 0.82817 0.83305 0.80756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.48 71.98 0.68 -2.58 16 2 C 0.15 3.90 2.57 44.99 0.12 4.02 16 3 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 4 C -0.12 -3.49 4.87 30.59 0.15 -3.34 16 5 C 0.15 6.03 6.15 86.38 0.53 6.56 16 6 N -0.74 -37.77 5.60 -343.44 -1.92 -39.70 16 7 C -0.25 -13.97 9.99 84.04 0.84 -13.13 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -58.98 13.06 21.66 0.28 -58.70 16 11 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 15 N -0.71 -17.18 4.48 -445.52 -2.00 -19.18 16 16 C 0.57 15.30 7.74 86.75 0.67 15.97 16 17 O -0.57 -18.91 16.07 -3.94 -0.06 -18.98 16 18 C -0.20 -4.74 5.89 -19.96 -0.12 -4.85 16 19 C -0.02 -0.34 9.70 22.70 0.22 -0.12 16 20 C -0.17 -2.80 9.44 22.53 0.21 -2.59 16 21 C 0.18 3.77 6.73 41.96 0.28 4.05 16 22 C -0.08 -1.48 5.88 -20.05 -0.12 -1.60 16 23 C -0.10 -1.78 9.57 22.50 0.22 -1.57 16 24 C -0.14 -1.90 10.03 22.24 0.22 -1.67 16 25 C -0.11 -1.14 10.04 22.32 0.22 -0.92 16 26 C -0.13 -1.29 10.03 22.23 0.22 -1.06 16 27 C -0.10 -1.27 9.42 22.50 0.21 -1.06 16 28 N -0.50 -11.97 9.40 -183.83 -1.73 -13.70 16 29 C 0.14 3.19 10.70 85.08 0.91 4.10 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.02 0.84 7.75 -2.38 -0.02 0.82 16 37 H 0.38 19.94 7.67 -92.71 -0.71 19.23 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.41 8.49 6.65 -92.71 -0.62 7.87 16 40 H 0.16 2.89 7.73 -2.91 -0.02 2.86 16 41 H 0.18 1.68 6.17 -2.91 -0.02 1.66 16 42 H 0.12 2.53 7.53 -2.91 -0.02 2.50 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.15 1.13 6.17 -2.91 -0.02 1.11 16 47 H 0.18 3.20 6.41 -2.91 -0.02 3.18 16 Total: -1.00 -74.24 396.05 2.22 -72.02 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.32 Total: 33.21 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.94 Total: -3.58 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.37 Total: -131.27 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.24 2.22 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699153273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.323 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds