Wall clock time and date at job start Tue Mar 31 2020 23:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35770 * 116.99581 * 2 1 4 4 C 1.35591 * 126.08437 * 179.59954 * 3 2 1 5 5 C 1.41054 * 107.80060 * 180.15110 * 4 3 2 6 6 C 1.47721 * 125.98416 * 179.86525 * 5 4 3 7 7 O 1.21572 * 119.99870 * 359.71418 * 6 5 4 8 8 N 1.34776 * 120.00103 * 179.71038 * 6 5 4 9 9 C 1.46495 * 119.99750 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47645 * 35.00257 * 9 8 6 11 11 C 1.53000 * 109.47263 * 274.99902 * 9 8 6 12 12 C 1.52997 * 109.47129 * 155.00353 * 9 8 6 13 13 N 1.46904 * 109.47075 * 304.99950 * 12 9 8 14 14 C 1.46904 * 111.00243 * 180.02562 * 13 12 9 15 15 C 1.50696 * 109.47131 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00067 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00164 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00362 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00180 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99925 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47134 * 89.99492 * 22 20 18 24 24 H 1.48502 * 109.46835 * 209.99843 * 22 20 18 25 25 H 1.48498 * 109.46942 * 329.99555 * 22 20 18 26 26 N 1.31869 * 108.03587 * 359.59910 * 5 4 3 27 27 N 1.35843 * 126.08509 * 359.31097 * 3 2 1 28 28 C 1.46498 * 125.94950 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.47240 * 291.94324 * 1 2 3 30 30 H 1.08997 * 109.47379 * 51.94611 * 1 2 3 31 31 H 1.09002 * 109.46958 * 171.94110 * 1 2 3 32 32 H 1.07999 * 126.09942 * 0.02597 * 4 3 2 33 33 H 0.96996 * 119.99826 * 0.02562 * 8 6 5 34 34 H 1.09010 * 109.46909 * 60.00346 * 11 9 8 35 35 H 1.09000 * 109.47084 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47596 * 300.00685 * 11 9 8 37 37 H 1.08997 * 109.47609 * 64.99548 * 12 9 8 38 38 H 1.08998 * 109.47670 * 185.00217 * 12 9 8 39 39 H 1.00896 * 111.00165 * 56.04377 * 13 12 9 40 40 H 1.09000 * 109.46577 * 299.99966 * 14 13 12 41 41 H 1.09004 * 109.47015 * 59.99718 * 14 13 12 42 42 H 0.97007 * 119.99525 * 0.02562 * 17 15 14 43 43 H 0.97004 * 120.00242 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.46755 * 277.05051 * 28 27 3 45 45 H 1.08997 * 109.47401 * 37.05258 * 28 27 3 46 46 H 1.09002 * 109.47516 * 157.05413 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3842 1.4240 0.0077 5 6 3.5978 2.8182 0.0081 6 6 4.9108 3.4951 0.0182 7 8 5.9334 2.8379 0.0323 8 7 4.9750 4.8413 0.0115 9 6 6.2771 5.5125 0.0209 10 1 6.9916 4.9277 -0.5582 11 6 6.7737 5.6422 1.4623 12 6 6.1376 6.9050 -0.5975 13 7 5.5483 6.7885 -1.9382 14 6 5.3995 8.1090 -2.5644 15 6 4.7940 7.9495 -3.9351 16 8 4.5143 6.8445 -4.3498 17 7 4.5632 9.0347 -4.7003 18 6 4.0118 8.8897 -5.9471 19 1 3.7620 7.9059 -6.3160 20 6 3.7733 10.0086 -6.7358 21 7 3.2453 9.8695 -7.9310 22 14 4.2047 11.7104 -6.0975 23 1 5.5998 12.0442 -6.4816 24 1 3.2767 12.7095 -6.6855 25 1 4.0804 11.7302 -4.6178 26 7 2.4203 3.4117 -0.0078 27 7 1.4304 2.4210 -0.0132 28 6 -0.0163 2.6509 -0.0305 29 1 -0.3634 0.3840 0.9532 30 1 -0.3634 0.6334 -0.8092 31 1 -0.3633 -1.0175 -0.1441 32 1 4.1503 0.6628 0.0144 33 1 4.1591 5.3657 0.0005 34 1 6.8731 4.6502 1.9030 35 1 7.7423 6.1421 1.4693 36 1 6.0592 6.2271 2.0416 37 1 5.4922 7.5187 0.0308 38 1 7.1207 7.3697 -0.6720 39 1 4.6647 6.3026 -1.9038 40 1 4.7493 8.7314 -1.9497 41 1 6.3778 8.5816 -2.6525 42 1 4.7872 9.9184 -4.3688 43 1 3.0792 10.6506 -8.4818 44 1 -0.3835 2.5779 -1.0542 45 1 -0.5108 1.9012 0.5872 46 1 -0.2311 3.6446 0.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699370166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:43 Heat of formation + Delta-G solvation = -0.285290 kcal Electronic energy + Delta-G solvation = -28942.111468 eV Core-core repulsion = 24677.482063 eV Total energy + Delta-G solvation = -4264.629406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88699 -39.81944 -38.59650 -38.36987 -36.72061 -34.30745 -33.82036 -33.65858 -31.66722 -31.41083 -30.09464 -28.27842 -27.74103 -26.71611 -25.05474 -23.85190 -23.04358 -21.78408 -20.95849 -20.25471 -19.36931 -18.61315 -18.26109 -17.09322 -16.78896 -16.49774 -15.97613 -15.80307 -15.53302 -15.32593 -15.15411 -14.87023 -14.71557 -14.29283 -14.22793 -14.02310 -13.95657 -13.47330 -13.28680 -13.18600 -13.11211 -12.70678 -12.52600 -12.24218 -11.92131 -11.85829 -11.81688 -11.70346 -11.60803 -11.17080 -11.09775 -10.98097 -10.59168 -10.20815 -9.96690 -9.56189 -9.47450 -9.16152 -8.67798 -8.57339 -8.18617 -8.13475 -6.30068 -3.81360 1.15233 1.82159 1.96538 2.48508 3.02484 3.07408 3.08716 3.15182 3.32983 3.75615 3.86057 4.05044 4.11289 4.32301 4.34021 4.60100 4.63870 4.76242 4.78503 4.84510 5.01234 5.04629 5.10877 5.16049 5.21078 5.25056 5.41739 5.55053 5.57743 5.60280 5.65264 5.67300 5.80426 5.93202 5.94913 6.08202 6.14208 6.39910 6.94062 7.03298 7.06605 7.45140 7.54942 7.59517 8.10202 8.15879 8.61172 8.96386 9.43644 9.84510 10.83170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.002473 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.643623 B =11318.903312 C =13253.589633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.269 3.731 4 C -0.233 4.233 5 C 0.058 3.942 6 C 0.607 3.393 7 O -0.522 6.522 8 N -0.708 5.708 9 C 0.144 3.856 10 H 0.102 0.898 11 C -0.162 4.162 12 C 0.051 3.949 13 N -0.668 5.668 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.562 6.562 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.246 5.246 27 N -0.391 5.391 28 C 0.076 3.924 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.404 0.596 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.089 0.911 39 H 0.351 0.649 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -11.605 23.253 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.102 3.898 4 C -0.263 4.263 5 C -0.109 4.109 6 C 0.390 3.610 7 O -0.395 6.395 8 N -0.360 5.360 9 C 0.039 3.961 10 H 0.120 0.880 11 C -0.221 4.221 12 C -0.079 4.079 13 N -0.301 5.301 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.444 6.444 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 N -0.078 5.078 27 N -0.188 5.188 28 C -0.065 4.065 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.184 0.816 33 H 0.239 0.761 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.171 0.829 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.435 -12.065 22.439 25.860 hybrid contribution -1.010 1.474 0.710 1.923 sum -5.445 -10.591 23.149 26.033 Atomic orbital electron populations 1.23670 0.77922 1.05449 1.01523 1.86310 1.21664 1.21524 1.89876 1.19561 0.91047 0.78928 1.00255 1.20330 0.91968 0.95581 1.18458 1.21826 0.92760 0.93120 1.03207 1.16781 0.85913 0.81959 0.76301 1.90806 1.34161 1.65109 1.49454 1.45857 1.09958 1.05905 1.74266 1.21112 0.85169 0.93233 0.96556 0.87999 1.22160 1.01423 1.02709 0.95773 1.22312 1.01153 0.95109 0.89361 1.60005 1.33061 1.18345 1.18716 1.21723 1.01090 0.90817 0.94883 1.19720 0.84617 0.85309 0.86854 1.90582 1.55136 1.24945 1.73702 1.42202 1.57571 1.06824 1.16513 1.19433 1.36942 0.97436 0.89472 0.86322 1.25041 0.97386 0.98215 0.95581 1.69622 1.42845 1.30715 1.09054 0.86661 0.79303 0.84507 0.78841 1.19578 1.20232 1.19546 1.77709 0.95054 1.11180 1.23823 1.49043 1.06928 1.02902 1.59922 1.22556 0.74461 1.05567 1.03881 0.91881 0.91565 0.87240 0.81642 0.76090 0.91692 0.91217 0.92494 0.94869 0.89249 0.82915 0.93737 0.89284 0.79706 0.91641 0.90013 0.88647 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.42 101.05 0.95 0.99 16 2 O -0.29 -2.66 10.57 -19.02 -0.20 -2.86 16 3 C 0.27 3.04 7.78 -16.72 -0.13 2.91 16 4 C -0.23 -3.05 10.59 -39.46 -0.42 -3.47 16 5 C 0.06 0.81 7.09 -82.91 -0.59 0.22 16 6 C 0.61 8.80 7.79 -12.39 -0.10 8.70 16 7 O -0.52 -8.83 16.56 5.30 0.09 -8.75 16 8 N -0.71 -8.69 4.35 -54.79 -0.24 -8.93 16 9 C 0.14 1.64 2.88 -67.93 -0.20 1.45 16 10 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 11 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 12 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 13 N -0.67 -10.48 6.12 -115.06 -0.70 -11.18 16 14 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 15 C 0.45 10.35 7.82 -10.99 -0.09 10.26 16 16 O -0.56 -15.47 15.78 5.55 0.09 -15.39 16 17 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 18 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 22 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 26 N -0.25 -3.20 12.26 33.34 0.41 -2.79 16 27 N -0.39 -4.14 4.03 -68.19 -0.28 -4.42 16 28 C 0.08 0.44 9.59 59.85 0.57 1.01 16 29 H 0.06 0.18 6.45 -51.93 -0.34 -0.16 16 30 H 0.07 0.24 5.91 -51.93 -0.31 -0.06 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.40 4.56 7.85 -40.82 -0.32 4.24 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.35 5.85 7.28 -39.29 -0.29 5.56 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 0.40 7.58 -51.93 -0.39 0.01 16 45 H 0.10 0.28 4.68 -51.93 -0.24 0.03 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -37.67 386.89 -5.23 -42.90 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -6.30 Total: 15.91 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 0.06 Total: 14.42 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.09 Total: -66.77 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.03 Total: -27.00 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.67 -5.23 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699370166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.613 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds