Wall clock time and date at job start Tue Mar 31 2020 23:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35770 * 116.99581 * 2 1 4 4 C 1.35591 * 126.08437 * 179.59954 * 3 2 1 5 5 C 1.41054 * 107.80060 * 180.15110 * 4 3 2 6 6 C 1.47721 * 125.98416 * 179.86525 * 5 4 3 7 7 O 1.21572 * 119.99870 * 359.71418 * 6 5 4 8 8 N 1.34776 * 120.00103 * 179.71038 * 6 5 4 9 9 C 1.46495 * 119.99750 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47645 * 35.00257 * 9 8 6 11 11 C 1.53000 * 109.47263 * 274.99902 * 9 8 6 12 12 C 1.52997 * 109.47129 * 155.00353 * 9 8 6 13 13 N 1.46904 * 109.47075 * 304.99950 * 12 9 8 14 14 C 1.46904 * 111.00243 * 180.02562 * 13 12 9 15 15 C 1.50696 * 109.47131 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00067 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00164 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00362 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00242 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00180 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99925 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47134 * 89.99492 * 22 20 18 24 24 H 1.48502 * 109.46835 * 209.99843 * 22 20 18 25 25 H 1.48498 * 109.46942 * 329.99555 * 22 20 18 26 26 N 1.31869 * 108.03587 * 359.59910 * 5 4 3 27 27 N 1.35843 * 126.08509 * 359.31097 * 3 2 1 28 28 C 1.46498 * 125.94950 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.47240 * 291.94324 * 1 2 3 30 30 H 1.08997 * 109.47379 * 51.94611 * 1 2 3 31 31 H 1.09002 * 109.46958 * 171.94110 * 1 2 3 32 32 H 1.07999 * 126.09942 * 0.02597 * 4 3 2 33 33 H 0.96996 * 119.99826 * 0.02562 * 8 6 5 34 34 H 1.09010 * 109.46909 * 60.00346 * 11 9 8 35 35 H 1.09000 * 109.47084 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47596 * 300.00685 * 11 9 8 37 37 H 1.08997 * 109.47609 * 64.99548 * 12 9 8 38 38 H 1.08998 * 109.47670 * 185.00217 * 12 9 8 39 39 H 1.00896 * 111.00165 * 56.04377 * 13 12 9 40 40 H 1.09000 * 109.46577 * 299.99966 * 14 13 12 41 41 H 1.09004 * 109.47015 * 59.99718 * 14 13 12 42 42 H 0.97007 * 119.99525 * 0.02562 * 17 15 14 43 43 H 0.97004 * 120.00242 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.46755 * 277.05051 * 28 27 3 45 45 H 1.08997 * 109.47401 * 37.05258 * 28 27 3 46 46 H 1.09002 * 109.47516 * 157.05413 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3842 1.4240 0.0077 5 6 3.5978 2.8182 0.0081 6 6 4.9108 3.4951 0.0182 7 8 5.9334 2.8379 0.0323 8 7 4.9750 4.8413 0.0115 9 6 6.2771 5.5125 0.0209 10 1 6.9916 4.9277 -0.5582 11 6 6.7737 5.6422 1.4623 12 6 6.1376 6.9050 -0.5975 13 7 5.5483 6.7885 -1.9382 14 6 5.3995 8.1090 -2.5644 15 6 4.7940 7.9495 -3.9351 16 8 4.5143 6.8445 -4.3498 17 7 4.5632 9.0347 -4.7003 18 6 4.0118 8.8897 -5.9471 19 1 3.7620 7.9059 -6.3160 20 6 3.7733 10.0086 -6.7358 21 7 3.2453 9.8695 -7.9310 22 14 4.2047 11.7104 -6.0975 23 1 5.5998 12.0442 -6.4816 24 1 3.2767 12.7095 -6.6855 25 1 4.0804 11.7302 -4.6178 26 7 2.4203 3.4117 -0.0078 27 7 1.4304 2.4210 -0.0132 28 6 -0.0163 2.6509 -0.0305 29 1 -0.3634 0.3840 0.9532 30 1 -0.3634 0.6334 -0.8092 31 1 -0.3633 -1.0175 -0.1441 32 1 4.1503 0.6628 0.0144 33 1 4.1591 5.3657 0.0005 34 1 6.8731 4.6502 1.9030 35 1 7.7423 6.1421 1.4693 36 1 6.0592 6.2271 2.0416 37 1 5.4922 7.5187 0.0308 38 1 7.1207 7.3697 -0.6720 39 1 4.6647 6.3026 -1.9038 40 1 4.7493 8.7314 -1.9497 41 1 6.3778 8.5816 -2.6525 42 1 4.7872 9.9184 -4.3688 43 1 3.0792 10.6506 -8.4818 44 1 -0.3835 2.5779 -1.0542 45 1 -0.5108 1.9012 0.5872 46 1 -0.2311 3.6446 0.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699370166.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:42 Heat of formation + Delta-G solvation = -34.474335 kcal Electronic energy + Delta-G solvation = -28943.594017 eV Core-core repulsion = 24677.482063 eV Total energy + Delta-G solvation = -4266.111954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.74441 -40.85444 -40.26101 -39.25289 -37.86762 -36.07522 -35.15208 -34.53881 -33.74283 -32.35884 -30.92432 -29.11060 -28.96725 -27.28045 -26.62508 -24.92623 -24.30948 -22.58618 -21.88929 -21.31863 -21.21700 -20.27303 -19.36013 -17.93433 -17.77502 -17.68363 -17.19047 -16.97393 -16.60519 -16.41113 -16.23719 -16.16325 -15.72200 -15.49242 -15.30862 -15.15961 -14.94159 -14.66984 -14.46353 -14.19689 -14.11180 -14.02348 -13.91290 -13.36833 -13.13950 -13.02646 -12.79937 -12.68065 -12.45491 -12.40996 -12.30359 -11.98644 -11.92813 -11.84113 -11.51416 -11.32065 -10.46782 -10.34154 -10.25030 -10.09268 -9.56850 -9.31753 -8.41304 -6.02525 0.17830 1.01135 1.07190 1.30482 1.36903 1.45472 1.75729 1.96245 2.21554 2.23714 2.28672 2.71585 3.06952 3.15076 3.38628 3.75930 3.87776 3.98548 4.11318 4.14367 4.23492 4.23801 4.27741 4.34874 4.37251 4.45735 4.49875 4.58245 4.64187 4.69972 4.71733 4.76801 4.81544 4.95778 5.08179 5.20695 5.31380 5.45903 5.52708 5.89516 6.03533 6.07242 6.24199 6.32742 6.46886 6.59961 6.88296 7.05135 7.39824 7.97489 8.76597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.002473 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.643623 B =11318.903312 C =13253.589633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.299 6.299 3 C 0.279 3.721 4 C -0.265 4.265 5 C 0.039 3.961 6 C 0.603 3.397 7 O -0.558 6.558 8 N -0.698 5.698 9 C 0.142 3.858 10 H 0.074 0.926 11 C -0.152 4.152 12 C 0.057 3.943 13 N -0.694 5.694 14 C 0.062 3.938 15 C 0.445 3.555 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.228 1.228 26 N -0.260 5.260 27 N -0.384 5.384 28 C 0.061 3.939 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.410 0.590 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.340 0.660 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -8.887 26.202 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.205 6.205 3 C 0.111 3.889 4 C -0.295 4.295 5 C -0.127 4.127 6 C 0.386 3.614 7 O -0.434 6.434 8 N -0.349 5.349 9 C 0.038 3.962 10 H 0.092 0.908 11 C -0.211 4.211 12 C -0.072 4.072 13 N -0.327 5.327 14 C -0.070 4.070 15 C 0.233 3.767 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.459 4.459 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.151 1.151 26 N -0.092 5.092 27 N -0.183 5.183 28 C -0.077 4.077 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.178 0.822 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.159 0.841 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.227 0.773 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.846 -9.324 25.427 27.513 hybrid contribution -1.040 0.433 -0.262 1.156 sum -5.886 -8.891 25.165 27.331 Atomic orbital electron populations 1.24099 0.75271 1.07465 1.03108 1.86329 1.24432 1.20257 1.89490 1.19490 0.90780 0.79887 0.98740 1.20439 0.93206 0.95479 1.20368 1.21776 0.92841 0.93552 1.04521 1.16985 0.85880 0.82565 0.75928 1.90769 1.35313 1.65920 1.51420 1.45855 1.10724 1.05261 1.73086 1.21194 0.84122 0.93055 0.97861 0.90821 1.22076 1.02866 1.02269 0.93845 1.22397 1.02375 0.95041 0.87341 1.59991 1.32834 1.18197 1.21655 1.21666 1.02675 0.92009 0.90610 1.21099 0.82641 0.84029 0.88882 1.90562 1.56895 1.27237 1.75487 1.42012 1.57748 1.08300 1.15114 1.18994 1.39315 0.95358 0.92221 0.93025 1.26165 0.96225 1.03845 0.95290 1.69812 1.43993 1.32845 1.11009 0.85329 0.79289 0.76126 0.80530 1.18190 1.20031 1.15123 1.77606 0.95205 1.12146 1.24234 1.49385 1.08144 1.02222 1.58505 1.23041 0.71896 1.07283 1.05464 0.89767 0.90591 0.84995 0.82193 0.75404 0.93441 0.89162 0.90809 0.91962 0.87233 0.84067 0.89920 0.86231 0.77340 0.91136 0.88927 0.85364 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 9.42 113.37 1.07 1.03 16 2 O -0.30 -5.29 10.57 -90.97 -0.96 -6.25 16 3 C 0.28 6.33 7.78 83.46 0.65 6.98 16 4 C -0.26 -7.35 10.59 22.35 0.24 -7.11 16 5 C 0.04 1.15 7.09 42.34 0.30 1.45 16 6 C 0.60 18.43 7.79 86.75 0.68 19.11 16 7 O -0.56 -20.20 16.56 -3.94 -0.07 -20.27 16 8 N -0.70 -17.26 4.35 -445.54 -1.94 -19.20 16 9 C 0.14 3.10 2.88 44.99 0.13 3.23 16 10 H 0.07 2.05 7.58 -2.39 -0.02 2.04 16 11 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 12 C 0.06 1.10 5.30 86.30 0.46 1.56 16 13 N -0.69 -20.52 6.12 -517.92 -3.17 -23.69 16 14 C 0.06 1.85 6.17 85.55 0.53 2.38 16 15 C 0.45 20.34 7.82 87.66 0.69 21.03 16 16 O -0.62 -35.35 15.78 -3.07 -0.05 -35.40 16 17 N -0.59 -27.90 5.09 -306.99 -1.56 -29.46 16 18 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 19 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 20 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 21 N -0.94 -56.89 13.96 21.66 0.30 -56.58 16 22 Si 0.97 38.56 27.74 68.60 1.90 40.47 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 26 N -0.26 -6.84 12.26 -48.43 -0.59 -7.43 16 27 N -0.38 -7.93 4.03 -480.57 -1.94 -9.87 16 28 C 0.06 0.59 9.59 127.77 1.23 1.81 16 29 H 0.08 0.20 6.45 -2.39 -0.02 0.19 16 30 H 0.08 0.37 5.91 -2.39 -0.01 0.36 16 31 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.41 9.09 7.85 -92.71 -0.73 8.36 16 34 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.34 11.19 7.28 -89.70 -0.65 10.54 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 42 H 0.39 15.04 5.76 -92.70 -0.53 14.51 16 43 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.09 0.73 7.58 -2.39 -0.02 0.71 16 45 H 0.13 0.36 4.68 -2.39 -0.01 0.34 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -91.03 386.89 -1.03 -92.07 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.92 Total: 45.13 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 7.96 Total: 30.49 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -8.90 Total: -146.24 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -1.08 Total: -61.92 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.47 kcal Total: -91.03 -1.03 -92.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699370166.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.591 kcal (2) G-P(sol) polarization free energy of solvation -91.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds