Wall clock time and date at job start Tue Mar 31 2020 23:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46788 * 2 1 4 4 N 1.46500 * 109.46868 * 119.99630 * 2 1 3 5 5 C 1.36933 * 120.00099 * 275.00301 * 4 2 1 6 6 H 1.08004 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00279 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99607 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46957 * 90.00808 * 9 7 5 11 11 H 1.48506 * 109.46966 * 210.00454 * 9 7 5 12 12 H 1.48493 * 109.47403 * 330.00601 * 9 7 5 13 13 C 1.52994 * 109.47260 * 240.00244 * 2 1 3 14 14 H 1.09005 * 110.91118 * 302.44429 * 13 2 1 15 15 C 1.55276 * 111.10511 * 66.35601 * 13 2 1 16 16 C 1.54327 * 103.00835 * 153.44804 * 15 13 2 17 17 N 1.47031 * 107.27035 * 337.88798 * 16 15 13 18 18 C 1.34772 * 125.64660 * 178.91571 * 17 16 15 19 19 O 1.21604 * 119.99896 * 175.18946 * 18 17 16 20 20 C 1.47430 * 120.00021 * 355.19079 * 18 17 16 21 21 C 1.38745 * 120.33475 * 46.95027 * 20 18 17 22 22 C 1.38864 * 120.73329 * 179.78345 * 21 20 18 23 23 C 1.36352 * 121.05253 * 0.49750 * 22 21 20 24 24 C 1.40445 * 120.08348 * 359.74254 * 23 22 21 25 25 C 1.40798 * 121.25389 * 179.97438 * 24 23 22 26 26 C 1.36637 * 118.15347 * 180.02562 * 25 24 23 27 27 C 1.39238 * 119.90297 * 0.02562 * 26 25 24 28 28 N 1.31222 * 121.69864 * 0.02562 * 27 26 25 29 29 C 1.33354 * 121.35388 * 359.95580 * 28 27 26 30 30 C 1.47420 * 108.70278 * 358.94142 * 17 16 15 31 31 H 1.09000 * 109.47320 * 299.99913 * 1 2 3 32 32 H 1.08997 * 109.46791 * 60.00077 * 1 2 3 33 33 H 1.08996 * 109.47170 * 180.02562 * 1 2 3 34 34 H 0.96997 * 119.99864 * 95.00367 * 4 2 1 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.61853 * 35.09865 * 15 13 2 37 37 H 1.08988 * 110.90952 * 271.93696 * 15 13 2 38 38 H 1.08994 * 109.88302 * 218.47493 * 16 15 13 39 39 H 1.08994 * 109.88240 * 97.30157 * 16 15 13 40 40 H 1.08008 * 119.63304 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.47779 * 180.28123 * 22 21 20 42 42 H 1.07999 * 119.95740 * 179.76704 * 23 22 21 43 43 H 1.08002 * 120.92613 * 0.04565 * 25 24 23 44 44 H 1.08000 * 120.04606 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.14639 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.36716 * 142.96478 * 30 17 16 47 47 H 1.09002 * 110.36756 * 265.17877 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6122 -0.6616 3.5091 8 7 2.7373 -0.0051 4.6430 9 14 3.0565 -2.4741 3.4252 10 1 4.4891 -2.6162 3.0610 11 1 2.8173 -3.1041 4.7485 12 1 2.2163 -3.1427 2.3995 13 6 2.0401 -0.7212 -1.2492 14 1 1.6547 -1.7398 -1.2950 15 6 1.6787 0.0677 -2.5369 16 6 2.7798 -0.3631 -3.5287 17 7 3.9190 -0.8450 -2.7338 18 6 5.0741 -1.3301 -3.2306 19 8 5.9850 -1.6199 -2.4789 20 6 5.2333 -1.5094 -4.6853 21 6 4.8646 -0.4980 -5.5605 22 6 5.0151 -0.6562 -6.9318 23 6 5.5185 -1.8101 -7.4556 24 6 5.8998 -2.8614 -6.6059 25 6 6.4218 -4.0636 -7.1201 26 6 6.7719 -5.0448 -6.2360 27 6 6.6071 -4.8384 -4.8689 28 7 6.1191 -3.7163 -4.3949 29 6 5.7587 -2.7197 -5.2043 30 6 3.5882 -0.7102 -1.3036 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.0606 -0.4623 5.4350 36 1 1.7228 1.1414 -2.3544 37 1 0.6940 -0.2193 -2.9055 38 1 3.0856 0.4887 -4.1360 39 1 2.4095 -1.1637 -4.1689 40 1 4.4588 0.4240 -5.1706 41 1 4.7256 0.1461 -7.5944 42 1 5.6245 -1.9157 -8.5252 43 1 6.5426 -4.2063 -8.1839 44 1 7.1757 -5.9791 -6.5971 45 1 6.8882 -5.6221 -4.1809 46 1 3.9935 -1.5503 -0.7396 47 1 3.9748 0.2306 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699941712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:12 Heat of formation + Delta-G solvation = 17.897815 kcal Electronic energy + Delta-G solvation = -28952.975681 eV Core-core repulsion = 25099.984017 eV Total energy + Delta-G solvation = -3852.991664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.06752 -40.90176 -39.06472 -37.94182 -36.91287 -34.59031 -34.25141 -32.50437 -31.59317 -31.27200 -30.35680 -29.50723 -26.04053 -25.65889 -24.92416 -24.52260 -23.23169 -22.76499 -21.33072 -20.54825 -19.65130 -19.32613 -18.45776 -17.95283 -17.41082 -17.18025 -16.61805 -16.42196 -15.89935 -15.63822 -15.51623 -15.26092 -15.13848 -14.78769 -14.57344 -14.40739 -14.19439 -14.01117 -13.96498 -13.83020 -13.60870 -13.23888 -13.05152 -12.97878 -12.79767 -12.67875 -12.43001 -12.29876 -12.14422 -11.93587 -11.72321 -11.70484 -11.57627 -11.40750 -11.14687 -11.01417 -10.34363 -9.82616 -9.74322 -9.32032 -9.28258 -8.04162 -5.34817 -0.78854 -0.19560 0.77115 1.31168 1.36604 1.40024 1.61679 1.85792 2.06951 2.44660 3.07738 3.22861 3.28332 3.30744 3.50481 3.63599 3.72075 3.77465 3.83502 3.91880 4.00360 4.02097 4.12221 4.29252 4.37263 4.41321 4.47122 4.51197 4.58758 4.65137 4.67311 4.81361 4.83071 4.89257 4.94749 4.99916 5.06285 5.06808 5.10377 5.20565 5.22509 5.30885 5.36163 5.38342 5.55727 5.61653 5.78094 5.82677 6.21271 6.44569 6.98570 7.07351 7.07687 7.85516 8.01383 9.17762 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002922 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.467183 B = 9579.070082 C =10829.277334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.755 5.755 5 C -0.216 4.216 6 H 0.064 0.936 7 C -0.062 4.062 8 N -0.983 5.983 9 Si 0.941 3.059 10 H -0.293 1.293 11 H -0.292 1.292 12 H -0.254 1.254 13 C -0.096 4.096 14 H 0.081 0.919 15 C -0.110 4.110 16 C 0.095 3.905 17 N -0.616 5.616 18 C 0.569 3.431 19 O -0.577 6.577 20 C -0.140 4.140 21 C -0.052 4.052 22 C -0.122 4.122 23 C -0.059 4.059 24 C -0.126 4.126 25 C -0.045 4.045 26 C -0.177 4.177 27 C 0.120 3.880 28 N -0.524 5.524 29 C 0.128 3.872 30 C 0.120 3.880 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.360 0.640 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.175 0.825 45 H 0.167 0.833 46 H 0.036 0.964 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -5.188 -38.026 38.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.398 5.398 5 C -0.347 4.347 6 H 0.082 0.918 7 C -0.253 4.253 8 N -0.635 5.635 9 Si 0.770 3.230 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.179 1.179 13 C -0.116 4.116 14 H 0.099 0.901 15 C -0.148 4.148 16 C -0.026 4.026 17 N -0.349 5.349 18 C 0.359 3.641 19 O -0.457 6.457 20 C -0.144 4.144 21 C -0.072 4.072 22 C -0.140 4.140 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.071 4.071 26 C -0.196 4.196 27 C -0.051 4.051 28 N -0.233 5.233 29 C 0.006 3.994 30 C -0.003 4.003 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.172 0.828 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.204 0.796 44 H 0.193 0.807 45 H 0.185 0.815 46 H 0.055 0.945 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.506 -4.965 -36.613 36.979 hybrid contribution 0.899 -1.365 0.949 1.890 sum 2.405 -6.330 -35.664 36.302 Atomic orbital electron populations 1.22248 0.96252 1.01373 1.01408 1.20413 0.93531 0.94909 0.83617 0.93150 1.42908 1.80103 1.09407 1.07411 1.19034 1.34045 0.94477 0.87122 0.91806 1.25336 1.02901 1.01541 0.95542 1.69846 1.55226 1.37322 1.01084 0.85608 0.78028 0.82329 0.77014 1.21975 1.21903 1.17920 1.22565 0.92005 1.00848 0.96136 0.90100 1.22750 0.99285 1.01166 0.91617 1.22519 0.85231 1.00221 0.94632 1.48572 1.15843 1.62452 1.08038 1.18267 0.81038 0.76130 0.88657 1.90776 1.41547 1.52004 1.61335 1.19684 1.06686 0.96298 0.91750 1.21840 0.94032 0.97338 0.93989 1.21294 0.99375 0.99410 0.93874 1.21689 0.93707 0.91038 1.01286 1.19159 1.02915 0.98265 0.92478 1.22032 0.92324 0.90233 1.02519 1.22272 1.01748 1.02431 0.93150 1.23521 0.92050 0.93566 0.96001 1.68046 1.12452 1.02045 1.40714 1.18890 0.97141 0.92664 0.90708 1.22046 0.96637 1.00274 0.81294 0.94913 0.89592 0.93356 0.80788 0.93511 0.88871 0.86575 0.88258 0.90152 0.82757 0.80494 0.80409 0.79623 0.80715 0.81541 0.94520 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.34 71.98 0.67 -4.06 16 2 C 0.18 6.57 2.41 44.99 0.11 6.68 16 3 H 0.05 1.90 8.05 -2.38 -0.02 1.88 16 4 N -0.76 -36.00 4.62 -322.93 -1.49 -37.50 16 5 C -0.22 -12.53 10.41 84.03 0.87 -11.65 16 6 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 7 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 8 N -0.98 -65.30 13.97 21.65 0.30 -65.00 16 9 Si 0.94 49.20 27.74 68.60 1.90 51.10 16 10 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 11 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.25 -12.14 6.52 99.48 0.65 -11.50 16 13 C -0.10 -2.79 2.63 -9.36 -0.02 -2.81 16 14 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 15 C -0.11 -2.00 5.60 31.83 0.18 -1.82 16 16 C 0.10 1.78 5.63 86.73 0.49 2.27 16 17 N -0.62 -19.03 3.33 -815.64 -2.71 -21.74 16 18 C 0.57 20.69 7.15 86.67 0.62 21.31 16 19 O -0.58 -27.48 16.77 -4.04 -0.07 -27.55 16 20 C -0.14 -3.88 5.45 -19.86 -0.11 -3.99 16 21 C -0.05 -0.86 8.50 22.54 0.19 -0.67 16 22 C -0.12 -1.13 9.93 21.98 0.22 -0.91 16 23 C -0.06 -0.55 9.75 22.37 0.22 -0.34 16 24 C -0.13 -2.18 5.74 -21.29 -0.12 -2.30 16 25 C -0.05 -0.52 9.89 22.52 0.22 -0.29 16 26 C -0.18 -2.34 10.03 22.14 0.22 -2.12 16 27 C 0.12 2.68 11.15 85.02 0.95 3.63 16 28 N -0.52 -16.89 9.35 -187.96 -1.76 -18.64 16 29 C 0.13 3.57 6.59 40.61 0.27 3.83 16 30 C 0.12 4.36 6.06 86.86 0.53 4.89 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.90 7.51 -2.39 -0.02 1.88 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.36 17.24 5.66 -92.71 -0.52 16.71 16 35 H 0.26 16.31 8.31 -92.71 -0.77 15.53 16 36 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 37 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.25 5.97 -2.39 -0.01 1.24 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.15 1.89 5.86 -2.91 -0.02 1.87 16 41 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 43 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 44 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 47 H 0.06 2.21 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -94.07 382.81 2.55 -91.53 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.40 Total: 19.50 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.97 Total: 8.30 kcal Atomic # 7 Polarization: -137.22 SS G_CDS: -5.66 Total: -142.88 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.07 Total: -27.55 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.90 Total: 51.10 kcal Total: -94.07 2.55 -91.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699941712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.427 kcal (2) G-P(sol) polarization free energy of solvation -94.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds