Wall clock time and date at job start Tue Mar 31 2020 23:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47037 * 2 1 4 4 N 1.46494 * 109.46708 * 120.00277 * 2 1 3 5 5 C 1.36947 * 119.99801 * 274.99757 * 4 2 1 6 6 H 1.07999 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99632 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00105 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47167 * 90.00768 * 9 7 5 11 11 H 1.48509 * 109.47036 * 209.99921 * 9 7 5 12 12 H 1.48498 * 109.47504 * 330.00264 * 9 7 5 13 13 C 1.53002 * 109.47065 * 239.99903 * 2 1 3 14 14 H 1.08998 * 110.88382 * 299.81914 * 13 2 1 15 15 C 1.55150 * 111.00215 * 175.89530 * 13 2 1 16 16 C 1.54327 * 102.94117 * 206.42472 * 15 13 2 17 17 N 1.47020 * 107.27032 * 22.19573 * 16 15 13 18 18 C 1.34783 * 125.64799 * 181.02991 * 17 16 15 19 19 O 1.21598 * 119.99822 * 184.88779 * 18 17 16 20 20 C 1.47429 * 119.99574 * 4.88122 * 18 17 16 21 21 C 1.38748 * 120.33760 * 312.91040 * 20 18 17 22 22 C 1.38859 * 120.72487 * 180.02562 * 21 20 18 23 23 C 1.36349 * 121.06377 * 359.97438 * 22 21 20 24 24 C 1.40444 * 120.08397 * 0.02562 * 23 22 21 25 25 C 1.40802 * 121.26923 * 179.97438 * 24 23 22 26 26 C 1.36634 * 118.15258 * 179.97438 * 25 24 23 27 27 C 1.39229 * 119.91118 * 359.97438 * 26 25 24 28 28 N 1.31233 * 121.69639 * 359.97438 * 27 26 25 29 29 C 1.33358 * 121.34695 * 359.74549 * 28 27 26 30 30 C 1.47419 * 108.70548 * 1.05763 * 17 16 15 31 31 H 1.08998 * 109.47268 * 294.87968 * 1 2 3 32 32 H 1.09000 * 109.47511 * 174.87756 * 1 2 3 33 33 H 1.09008 * 109.47067 * 54.88085 * 1 2 3 34 34 H 0.97003 * 120.00707 * 95.00188 * 4 2 1 35 35 H 0.97001 * 119.99630 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72523 * 324.78833 * 15 13 2 37 37 H 1.08997 * 110.72120 * 88.06587 * 15 13 2 38 38 H 1.08998 * 109.88317 * 262.77448 * 16 15 13 39 39 H 1.08995 * 110.00905 * 141.68579 * 16 15 13 40 40 H 1.08001 * 119.63667 * 359.97438 * 21 20 18 41 41 H 1.08006 * 119.46992 * 180.02562 * 22 21 20 42 42 H 1.08006 * 119.96459 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.92685 * 0.02562 * 25 24 23 44 44 H 1.07999 * 120.04563 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.15272 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.37257 * 217.04022 * 30 17 16 47 47 H 1.09000 * 110.46248 * 94.75836 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6121 -0.6618 3.5090 8 7 2.7383 -0.0051 4.6427 9 14 3.0563 -2.4743 3.4251 10 1 4.4889 -2.6165 3.0609 11 1 2.8172 -3.1043 4.7485 12 1 2.2160 -3.1430 2.3995 13 6 2.0400 -0.7213 -1.2492 14 1 1.6921 -1.7540 -1.2709 15 6 3.5875 -0.6528 -1.3381 16 6 3.8522 -0.7704 -2.8539 17 7 2.6221 -0.3574 -3.5451 18 6 2.4400 -0.3383 -4.8805 19 8 1.4091 0.1068 -5.3472 20 6 3.4907 -0.8571 -5.7751 21 6 4.8145 -0.4845 -5.5912 22 6 5.8105 -0.9678 -6.4294 23 6 5.5168 -1.8195 -7.4528 24 6 4.1898 -2.2224 -7.6747 25 6 3.8584 -3.1005 -8.7243 26 6 2.5472 -3.4510 -8.8818 27 6 1.5835 -2.9416 -8.0156 28 7 1.8978 -2.1242 -7.0382 29 6 3.1597 -1.7478 -6.8274 30 6 1.6210 0.0330 -2.5358 31 1 -0.3634 0.4323 0.9323 32 1 -0.3634 -1.0235 -0.0918 33 1 -0.3633 0.5912 -0.8406 34 1 2.2490 -1.6318 1.1526 35 1 3.0616 -0.4624 5.4347 36 1 3.9541 0.2996 -0.9553 37 1 4.0418 -1.4858 -0.8016 38 1 4.0924 -1.8024 -3.1094 39 1 4.6758 -0.1165 -3.1405 40 1 5.0730 0.1895 -4.7879 41 1 6.8345 -0.6648 -6.2676 42 1 6.3055 -2.1843 -8.0943 43 1 4.6194 -3.4869 -9.3860 44 1 2.2588 -4.1229 -9.6766 45 1 0.5507 -3.2271 -8.1511 46 1 0.6244 -0.2775 -2.8499 47 1 1.6472 1.1099 -2.3698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699941713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:17 Heat of formation + Delta-G solvation = 43.191234 kcal Electronic energy + Delta-G solvation = -28781.598186 eV Core-core repulsion = 24929.703327 eV Total energy + Delta-G solvation = -3851.894859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.32578 -39.86578 -37.82897 -37.22226 -35.32922 -33.82654 -32.44183 -31.10416 -30.89620 -30.19353 -29.61583 -27.60043 -25.33260 -24.47893 -23.89439 -23.44566 -22.25741 -21.35485 -19.84250 -19.59997 -18.77416 -17.72978 -17.42073 -17.25017 -16.50786 -16.05567 -15.51553 -15.08265 -14.83769 -14.62921 -14.46657 -14.02206 -13.84788 -13.65748 -13.59817 -13.36305 -13.05742 -12.96665 -12.65046 -12.46719 -12.28297 -12.20565 -12.08887 -11.86421 -11.69502 -11.50271 -10.99011 -10.90859 -10.80400 -10.57215 -10.44619 -10.24540 -10.09702 -9.92755 -9.59313 -9.56851 -9.18703 -8.94011 -8.69078 -8.53617 -7.27649 -5.77160 -3.12457 -0.15261 0.43674 1.44754 2.43517 2.75572 3.02802 3.35986 3.39050 3.44597 3.77127 3.91133 4.11968 4.34123 4.35217 4.50190 4.52740 4.58381 4.68477 4.72307 4.76715 4.88957 5.01907 5.04403 5.25839 5.27615 5.40515 5.47277 5.48338 5.56504 5.59885 5.66207 5.66788 5.81661 5.84951 5.89748 5.92982 5.99444 6.07245 6.13746 6.20139 6.26953 6.38212 6.39840 6.45470 6.53433 6.80737 7.03712 7.49722 7.65198 7.99429 8.17818 8.41957 9.20515 9.93029 10.13030 11.41293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.002500 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.415976 B =11198.140804 C =11595.582812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.747 5.747 5 C -0.239 4.239 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.119 4.119 16 C 0.095 3.905 17 N -0.614 5.614 18 C 0.579 3.421 19 O -0.515 6.515 20 C -0.096 4.096 21 C -0.069 4.069 22 C -0.120 4.120 23 C -0.078 4.078 24 C -0.108 4.108 25 C -0.057 4.057 26 C -0.176 4.176 27 C 0.135 3.865 28 N -0.456 5.456 29 C 0.160 3.840 30 C 0.118 3.882 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.161 0.839 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -6.383 -29.190 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.369 4.369 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.098 0.902 15 C -0.157 4.157 16 C -0.028 4.028 17 N -0.349 5.349 18 C 0.367 3.633 19 O -0.390 6.390 20 C -0.099 4.099 21 C -0.089 4.089 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.111 4.111 25 C -0.083 4.083 26 C -0.195 4.195 27 C -0.038 4.038 28 N -0.163 5.163 29 C 0.037 3.963 30 C -0.004 4.004 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.178 0.822 46 H 0.096 0.904 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.480 -5.556 -28.701 29.743 hybrid contribution 1.037 -1.791 -0.463 2.121 sum 6.517 -7.347 -29.164 30.773 Atomic orbital electron populations 1.22465 0.98726 1.00674 1.01013 1.20099 0.91991 0.95433 0.84368 0.92322 1.42747 1.79859 1.09307 1.07015 1.19055 1.36666 0.95501 0.85671 0.89196 1.24658 1.01585 0.97357 0.95574 1.69701 1.52758 1.35531 1.00273 0.86577 0.78362 0.86934 0.76808 1.21136 1.21870 1.20354 1.22722 0.95199 1.00298 0.94453 0.90200 1.22617 0.96392 1.04166 0.92483 1.22298 0.86944 0.99759 0.93752 1.48443 1.15978 1.65854 1.04588 1.17484 0.86425 0.78936 0.80464 1.90807 1.27872 1.45407 1.74905 1.19781 0.93916 0.99472 0.96772 1.21579 0.90941 0.97832 0.98575 1.20861 0.99834 0.97843 0.95282 1.21144 0.94725 0.96408 0.97437 1.18797 0.94737 1.00071 0.97450 1.21479 0.97086 0.94328 0.95396 1.21945 0.93983 1.02138 1.01473 1.23113 1.00359 0.90899 0.89391 1.68125 1.18455 1.10787 1.18886 1.18537 0.88817 0.95263 0.93663 1.22272 0.92294 0.99429 0.86432 0.92087 0.93696 0.93974 0.80736 0.93108 0.89691 0.89886 0.91699 0.91405 0.84198 0.84641 0.84816 0.84165 0.84314 0.82204 0.90370 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.23 37.16 0.34 -2.58 16 2 C 0.19 3.46 2.40 -67.93 -0.16 3.29 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 N -0.75 -16.72 4.69 -53.43 -0.25 -16.97 16 5 C -0.24 -6.49 10.41 -15.05 -0.16 -6.65 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 9 Si 0.88 21.64 27.73 -169.99 -4.71 16.93 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 13 C -0.11 -1.60 2.64 -88.47 -0.23 -1.83 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.60 6.19 -24.90 -0.15 -1.75 16 16 C 0.10 1.10 5.63 -3.06 -0.02 1.08 16 17 N -0.61 -8.61 3.33 -171.78 -0.57 -9.18 16 18 C 0.58 9.06 7.14 -12.51 -0.09 8.97 16 19 O -0.51 -9.87 16.77 5.28 0.09 -9.78 16 20 C -0.10 -1.25 5.45 -104.61 -0.57 -1.82 16 21 C -0.07 -0.66 8.49 -39.16 -0.33 -0.99 16 22 C -0.12 -0.87 9.93 -40.03 -0.40 -1.27 16 23 C -0.08 -0.56 9.75 -39.43 -0.38 -0.95 16 24 C -0.11 -1.04 5.74 -106.82 -0.61 -1.66 16 25 C -0.06 -0.41 9.90 -39.19 -0.39 -0.79 16 26 C -0.18 -1.23 10.03 -39.79 -0.40 -1.63 16 27 C 0.13 1.31 11.15 -17.44 -0.19 1.12 16 28 N -0.46 -6.34 9.34 -10.76 -0.10 -6.44 16 29 C 0.16 2.08 6.59 -84.58 -0.56 1.52 16 30 C 0.12 1.70 5.49 -2.53 -0.01 1.69 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.63 7.59 -51.92 -0.39 0.23 16 34 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.64 5.97 -51.93 -0.31 0.33 16 40 H 0.14 1.12 5.87 -52.49 -0.31 0.81 16 41 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 42 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 45 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 47 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -35.81 382.92 -10.16 -45.97 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.74 Total: 6.07 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -4.42 Total: -4.22 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.15 Total: -60.73 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.81 -10.16 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699941713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.159 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds