Wall clock time and date at job start Tue Mar 31 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 N 1.46510 * 109.46619 * 240.00267 * 2 1 3 5 5 C 1.36935 * 119.99913 * 85.27597 * 4 2 1 6 6 H 1.07998 * 119.99903 * 359.72409 * 5 4 2 7 7 C 1.38805 * 119.99941 * 179.72376 * 5 4 2 8 8 N 1.31619 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00318 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 89.99939 * 9 7 5 11 11 H 1.48498 * 109.47426 * 209.99884 * 9 7 5 12 12 H 1.48499 * 109.46925 * 330.00163 * 9 7 5 13 13 C 1.53000 * 109.47521 * 120.00452 * 2 1 3 14 14 H 1.08993 * 110.88620 * 179.29762 * 13 2 1 15 15 C 1.55160 * 111.00296 * 303.17641 * 13 2 1 16 16 C 1.54366 * 102.92218 * 153.54451 * 15 13 2 17 17 N 1.47028 * 107.28790 * 337.86272 * 16 15 13 18 18 C 1.34771 * 125.64581 * 178.94179 * 17 16 15 19 19 O 1.21606 * 119.99622 * 175.12338 * 18 17 16 20 20 C 1.47432 * 120.00401 * 355.12086 * 18 17 16 21 21 C 1.38745 * 120.33300 * 46.99083 * 20 18 17 22 22 C 1.38869 * 120.73006 * 179.78588 * 21 20 18 23 23 C 1.36348 * 121.05410 * 0.50055 * 22 21 20 24 24 C 1.40443 * 120.08508 * 359.74096 * 23 22 21 25 25 C 1.40806 * 121.25735 * 179.97438 * 24 23 22 26 26 C 1.36631 * 118.15498 * 180.02562 * 25 24 23 27 27 C 1.39243 * 119.90570 * 0.02562 * 26 25 24 28 28 N 1.31227 * 121.69776 * 0.02562 * 27 26 25 29 29 C 1.33352 * 121.35104 * 359.96477 * 28 27 26 30 30 C 1.47426 * 108.70124 * 358.90879 * 17 16 15 31 31 H 1.08996 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46534 * 300.00033 * 1 2 3 33 33 H 1.08998 * 109.47099 * 59.99236 * 1 2 3 34 34 H 0.96996 * 119.99911 * 264.99967 * 4 2 1 35 35 H 0.96997 * 120.00395 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.72024 * 271.94261 * 15 13 2 37 37 H 1.09008 * 110.71659 * 35.20830 * 15 13 2 38 38 H 1.08997 * 109.90436 * 218.42012 * 16 15 13 39 39 H 1.09001 * 109.97210 * 97.34292 * 16 15 13 40 40 H 1.08000 * 119.63060 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.47077 * 180.28305 * 22 21 20 42 42 H 1.07994 * 119.96073 * 179.76382 * 23 22 21 43 43 H 1.07999 * 120.92139 * 0.05166 * 25 24 23 44 44 H 1.07994 * 120.04814 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.14791 * 180.02562 * 27 26 25 46 46 H 1.09008 * 110.36135 * 265.28834 * 30 17 16 47 47 H 1.08993 * 110.45969 * 143.01984 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1543 -0.0061 -2.3744 6 1 1.8975 1.0418 -2.4228 7 6 2.6224 -0.6590 -3.5064 8 7 2.9358 -1.9359 -3.4473 9 14 2.8073 0.2746 -5.1138 10 1 4.1697 0.8605 -5.1920 11 1 2.6025 -0.6557 -6.2530 12 1 1.7970 1.3612 -5.1742 13 6 2.0401 -0.7213 1.2491 14 1 3.1296 -0.7456 1.2662 15 6 1.4782 -0.0658 2.5383 16 6 1.4926 -1.2298 3.5520 17 7 1.4920 -2.4813 2.7803 18 6 1.5227 -3.7244 3.2999 19 8 1.4293 -4.6915 2.5685 20 6 1.6695 -3.9120 4.7548 21 6 0.8939 -3.1750 5.6381 22 6 1.0223 -3.3482 7.0100 23 6 1.9183 -4.2370 7.5259 24 6 2.7268 -5.0000 6.6677 25 6 3.6605 -5.9246 7.1737 26 6 4.4148 -6.6330 6.2815 27 6 4.2473 -6.4286 4.9144 28 7 3.3763 -5.5649 4.4480 29 6 2.6096 -4.8424 5.2656 30 6 1.4513 -2.1510 1.3441 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2489 -1.6318 -1.1528 35 1 3.2632 -2.3921 -4.2383 36 1 2.1254 0.7452 2.8721 37 1 0.4614 0.2924 2.3771 38 1 0.6053 -1.1831 4.1833 39 1 2.3896 -1.1752 4.1690 40 1 0.1797 -2.4615 5.2544 41 1 0.4050 -2.7670 7.6789 42 1 2.0062 -4.3548 8.5958 43 1 3.7769 -6.0700 8.2375 44 1 5.1399 -7.3505 6.6361 45 1 4.8497 -6.9955 4.2201 46 1 0.4235 -2.1629 0.9811 47 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699941714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:20 Heat of formation + Delta-G solvation = 46.109181 kcal Electronic energy + Delta-G solvation = -28906.926248 eV Core-core repulsion = 25055.157921 eV Total energy + Delta-G solvation = -3851.768327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23183 -39.78556 -37.79227 -37.12520 -35.07259 -33.72451 -32.48210 -30.92934 -30.76229 -30.15198 -28.66040 -27.60534 -25.19973 -24.40549 -23.85050 -23.71886 -22.50886 -21.68126 -19.58430 -18.81772 -18.63791 -17.55418 -17.15132 -17.06405 -16.37950 -16.02888 -15.34416 -15.00206 -14.76064 -14.58910 -14.37166 -14.00404 -13.84996 -13.64463 -13.51046 -13.31680 -13.22009 -12.82977 -12.70073 -12.27100 -12.13798 -12.04702 -12.00425 -11.68475 -11.43113 -11.06534 -10.87422 -10.81893 -10.79878 -10.52524 -10.24794 -10.19065 -9.95373 -9.81777 -9.57897 -9.43291 -9.10548 -8.87191 -8.57804 -8.35033 -6.91993 -5.70656 -3.00273 -0.06567 0.51829 1.54136 2.52254 2.90352 3.17802 3.46818 3.51519 3.53821 3.86613 4.00887 4.20862 4.41703 4.43311 4.57458 4.58606 4.65218 4.72850 4.76310 4.89496 4.97087 5.07382 5.15056 5.36195 5.40969 5.47262 5.55768 5.64058 5.65276 5.70525 5.71398 5.82281 5.85054 5.90027 5.98341 5.99165 6.12438 6.16289 6.21342 6.31496 6.40050 6.47308 6.54754 6.58325 6.75081 6.87368 7.15098 7.66249 7.74273 7.77368 8.35248 8.47145 9.58170 10.15830 10.50148 11.51693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017718 B = 0.002570 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.958116 B =10893.168474 C =12033.087368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.185 3.815 3 H 0.052 0.948 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.131 4.131 16 C 0.099 3.901 17 N -0.614 5.614 18 C 0.575 3.425 19 O -0.509 6.509 20 C -0.091 4.091 21 C -0.073 4.073 22 C -0.121 4.121 23 C -0.080 4.080 24 C -0.108 4.108 25 C -0.059 4.059 26 C -0.174 4.174 27 C 0.136 3.864 28 N -0.453 5.453 29 C 0.160 3.840 30 C 0.112 3.888 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.162 0.838 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -3.234 28.752 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.075 3.925 3 H 0.070 0.930 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.169 4.169 16 C -0.024 4.024 17 N -0.349 5.349 18 C 0.362 3.638 19 O -0.383 6.383 20 C -0.095 4.095 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.099 4.099 24 C -0.111 4.111 25 C -0.085 4.085 26 C -0.194 4.194 27 C -0.037 4.037 28 N -0.160 5.160 29 C 0.037 3.963 30 C -0.010 4.010 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.179 0.821 46 H 0.096 0.904 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.642 -3.536 27.299 27.576 hybrid contribution 0.351 -0.011 0.062 0.356 sum -1.291 -3.547 27.361 27.620 Atomic orbital electron populations 1.22620 0.99478 1.01065 0.99969 1.20073 0.91831 0.95262 0.85380 0.93048 1.42452 1.78131 1.10716 1.05341 1.19214 1.36535 0.93826 0.87475 0.91198 1.24749 1.02192 0.95951 0.98056 1.69666 1.50572 1.08646 1.28967 0.86218 0.77712 0.78577 0.83830 1.21805 1.21835 1.20830 1.22698 1.00662 0.93835 0.95020 0.89830 1.22837 1.02866 0.96530 0.94679 1.22185 1.01005 0.84210 0.94984 1.48462 1.73169 1.04629 1.08633 1.17491 0.77421 0.82022 0.86817 1.90841 1.48156 1.38812 1.60527 1.19847 0.98124 0.97635 0.93911 1.21542 0.97717 0.97018 0.93023 1.20830 0.99092 0.99066 0.94892 1.21116 0.94530 0.94761 0.99468 1.18798 0.99127 0.99313 0.93818 1.21462 0.93229 0.93363 1.00429 1.21959 1.01316 1.01454 0.94687 1.23148 0.93386 0.93296 0.93868 1.68149 1.04312 1.05203 1.38313 1.18564 0.94548 0.94469 0.88738 1.22458 1.02134 0.96579 0.79800 0.93056 0.94146 0.92745 0.78131 0.93488 0.90153 0.89668 0.91660 0.91773 0.84328 0.84786 0.84911 0.84223 0.84316 0.82116 0.90432 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 8.85 37.16 0.33 -2.65 16 2 C 0.18 3.54 2.84 -67.92 -0.19 3.35 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.72 -18.12 5.07 -53.42 -0.27 -18.39 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 9 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.10 -1.66 3.07 -88.47 -0.27 -1.93 16 14 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.13 -1.54 6.31 -24.87 -0.16 -1.70 16 16 C 0.10 1.13 5.63 -3.04 -0.02 1.12 16 17 N -0.61 -9.60 3.33 -171.76 -0.57 -10.17 16 18 C 0.58 10.05 7.14 -12.52 -0.09 9.96 16 19 O -0.51 -11.10 16.77 5.27 0.09 -11.01 16 20 C -0.09 -1.29 5.45 -104.61 -0.57 -1.86 16 21 C -0.07 -0.73 8.50 -39.16 -0.33 -1.06 16 22 C -0.12 -0.90 9.93 -40.03 -0.40 -1.30 16 23 C -0.08 -0.61 9.75 -39.43 -0.38 -0.99 16 24 C -0.11 -1.12 5.74 -106.82 -0.61 -1.74 16 25 C -0.06 -0.46 9.89 -39.19 -0.39 -0.85 16 26 C -0.17 -1.40 10.03 -39.79 -0.40 -1.80 16 27 C 0.14 1.51 11.15 -17.44 -0.19 1.32 16 28 N -0.45 -7.02 9.35 -10.76 -0.10 -7.12 16 29 C 0.16 2.26 6.59 -84.58 -0.56 1.70 16 30 C 0.11 1.97 5.67 -2.53 -0.01 1.96 16 31 H 0.05 0.92 6.04 -51.93 -0.31 0.61 16 32 H 0.04 0.56 6.07 -51.93 -0.32 0.25 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.38 10.39 7.06 -40.82 -0.29 10.10 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.94 5.75 -51.92 -0.30 0.64 16 38 H 0.07 0.58 5.97 -51.93 -0.31 0.27 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.14 1.13 5.86 -52.49 -0.31 0.83 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 46 H 0.08 1.40 5.66 -51.92 -0.29 1.10 16 47 H 0.08 1.70 7.84 -51.93 -0.41 1.29 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -36.69 377.75 -10.26 -46.95 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.30 Total: 8.15 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.50 Total: -3.75 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.22 Total: -63.67 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.69 -10.26 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699941714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.063 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds