Wall clock time and date at job start Tue Mar 31 2020 23:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47365 * 2 1 4 4 N 1.46510 * 109.46619 * 240.00267 * 2 1 3 5 5 C 1.36935 * 119.99913 * 85.27597 * 4 2 1 6 6 H 1.07998 * 119.99903 * 359.72409 * 5 4 2 7 7 C 1.38805 * 119.99941 * 179.72376 * 5 4 2 8 8 N 1.31619 * 120.00354 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00318 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47024 * 89.99939 * 9 7 5 11 11 H 1.48498 * 109.47426 * 209.99884 * 9 7 5 12 12 H 1.48499 * 109.46925 * 330.00163 * 9 7 5 13 13 C 1.53000 * 109.47521 * 120.00452 * 2 1 3 14 14 H 1.08993 * 110.88620 * 179.29762 * 13 2 1 15 15 C 1.55160 * 111.00296 * 303.17641 * 13 2 1 16 16 C 1.54366 * 102.92218 * 153.54451 * 15 13 2 17 17 N 1.47028 * 107.28790 * 337.86272 * 16 15 13 18 18 C 1.34771 * 125.64581 * 178.94179 * 17 16 15 19 19 O 1.21606 * 119.99622 * 175.12338 * 18 17 16 20 20 C 1.47432 * 120.00401 * 355.12086 * 18 17 16 21 21 C 1.38745 * 120.33300 * 46.99083 * 20 18 17 22 22 C 1.38869 * 120.73006 * 179.78588 * 21 20 18 23 23 C 1.36348 * 121.05410 * 0.50055 * 22 21 20 24 24 C 1.40443 * 120.08508 * 359.74096 * 23 22 21 25 25 C 1.40806 * 121.25735 * 179.97438 * 24 23 22 26 26 C 1.36631 * 118.15498 * 180.02562 * 25 24 23 27 27 C 1.39243 * 119.90570 * 0.02562 * 26 25 24 28 28 N 1.31227 * 121.69776 * 0.02562 * 27 26 25 29 29 C 1.33352 * 121.35104 * 359.96477 * 28 27 26 30 30 C 1.47426 * 108.70124 * 358.90879 * 17 16 15 31 31 H 1.08996 * 109.46872 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46534 * 300.00033 * 1 2 3 33 33 H 1.08998 * 109.47099 * 59.99236 * 1 2 3 34 34 H 0.96996 * 119.99911 * 264.99967 * 4 2 1 35 35 H 0.96997 * 120.00395 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.72024 * 271.94261 * 15 13 2 37 37 H 1.09008 * 110.71659 * 35.20830 * 15 13 2 38 38 H 1.08997 * 109.90436 * 218.42012 * 16 15 13 39 39 H 1.09001 * 109.97210 * 97.34292 * 16 15 13 40 40 H 1.08000 * 119.63060 * 0.02562 * 21 20 18 41 41 H 1.07993 * 119.47077 * 180.28305 * 22 21 20 42 42 H 1.07994 * 119.96073 * 179.76382 * 23 22 21 43 43 H 1.07999 * 120.92139 * 0.05166 * 25 24 23 44 44 H 1.07994 * 120.04814 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.14791 * 180.02562 * 27 26 25 46 46 H 1.09008 * 110.36135 * 265.28834 * 30 17 16 47 47 H 1.08993 * 110.45969 * 143.01984 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1543 -0.0061 -2.3744 6 1 1.8975 1.0418 -2.4228 7 6 2.6224 -0.6590 -3.5064 8 7 2.9358 -1.9359 -3.4473 9 14 2.8073 0.2746 -5.1138 10 1 4.1697 0.8605 -5.1920 11 1 2.6025 -0.6557 -6.2530 12 1 1.7970 1.3612 -5.1742 13 6 2.0401 -0.7213 1.2491 14 1 3.1296 -0.7456 1.2662 15 6 1.4782 -0.0658 2.5383 16 6 1.4926 -1.2298 3.5520 17 7 1.4920 -2.4813 2.7803 18 6 1.5227 -3.7244 3.2999 19 8 1.4293 -4.6915 2.5685 20 6 1.6695 -3.9120 4.7548 21 6 0.8939 -3.1750 5.6381 22 6 1.0223 -3.3482 7.0100 23 6 1.9183 -4.2370 7.5259 24 6 2.7268 -5.0000 6.6677 25 6 3.6605 -5.9246 7.1737 26 6 4.4148 -6.6330 6.2815 27 6 4.2473 -6.4286 4.9144 28 7 3.3763 -5.5649 4.4480 29 6 2.6096 -4.8424 5.2656 30 6 1.4513 -2.1510 1.3441 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.2489 -1.6318 -1.1528 35 1 3.2632 -2.3921 -4.2383 36 1 2.1254 0.7452 2.8721 37 1 0.4614 0.2924 2.3771 38 1 0.6053 -1.1831 4.1833 39 1 2.3896 -1.1752 4.1690 40 1 0.1797 -2.4615 5.2544 41 1 0.4050 -2.7670 7.6789 42 1 2.0062 -4.3548 8.5958 43 1 3.7769 -6.0700 8.2375 44 1 5.1399 -7.3505 6.6361 45 1 4.8497 -6.9955 4.2201 46 1 0.4235 -2.1629 0.9811 47 1 2.0621 -2.8514 0.7746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699941714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:19 Heat of formation + Delta-G solvation = 20.584512 kcal Electronic energy + Delta-G solvation = -28908.033081 eV Core-core repulsion = 25055.157921 eV Total energy + Delta-G solvation = -3852.875160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06137 -40.94732 -39.11375 -37.92869 -36.72371 -34.59223 -34.21215 -32.20854 -31.57166 -31.14388 -30.21842 -29.00099 -26.39091 -25.83440 -25.06014 -24.51560 -23.57728 -22.97149 -20.65858 -20.26146 -19.44539 -19.14643 -18.38476 -17.95236 -17.40434 -17.28171 -16.63046 -16.36238 -15.81051 -15.62935 -15.42930 -15.32315 -15.07838 -14.96137 -14.75789 -14.42891 -14.17754 -13.96603 -13.84598 -13.57222 -13.48154 -13.19055 -12.96152 -12.80551 -12.76466 -12.62456 -12.28113 -12.23550 -12.16265 -12.12066 -11.64000 -11.57047 -11.42474 -11.39360 -11.12677 -10.91653 -10.32692 -9.81449 -9.69268 -9.27089 -9.01496 -7.92539 -5.21957 -0.77530 -0.18458 0.78519 1.45509 1.48096 1.56410 1.62543 1.87484 2.09380 2.56272 3.09066 3.25938 3.34683 3.40728 3.59239 3.64369 3.74237 3.82946 3.92598 3.97040 4.03062 4.11887 4.14447 4.27927 4.36926 4.41261 4.45441 4.52826 4.61165 4.63929 4.67914 4.77049 4.90294 4.90648 4.94994 5.00665 5.07572 5.09042 5.14434 5.22217 5.23554 5.32745 5.36744 5.40912 5.53803 5.57140 5.67684 5.84038 6.28737 6.46779 7.00287 7.09611 7.33638 8.11577 8.32953 9.31373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017718 B = 0.002570 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.958116 B =10893.168474 C =12033.087368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.742 5.742 5 C -0.233 4.233 6 H 0.082 0.918 7 C -0.084 4.084 8 N -0.976 5.976 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.265 1.265 13 C -0.095 4.095 14 H 0.064 0.936 15 C -0.115 4.115 16 C 0.096 3.904 17 N -0.614 5.614 18 C 0.569 3.431 19 O -0.577 6.577 20 C -0.141 4.141 21 C -0.052 4.052 22 C -0.122 4.122 23 C -0.059 4.059 24 C -0.126 4.126 25 C -0.045 4.045 26 C -0.176 4.176 27 C 0.119 3.881 28 N -0.525 5.525 29 C 0.127 3.873 30 C 0.117 3.883 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.176 0.824 45 H 0.166 0.834 46 H 0.071 0.929 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -0.635 34.068 34.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.382 5.382 5 C -0.365 4.365 6 H 0.100 0.900 7 C -0.276 4.276 8 N -0.627 5.627 9 Si 0.803 3.197 10 H -0.215 1.215 11 H -0.228 1.228 12 H -0.190 1.190 13 C -0.115 4.115 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.025 4.025 17 N -0.348 5.348 18 C 0.359 3.641 19 O -0.457 6.457 20 C -0.145 4.145 21 C -0.072 4.072 22 C -0.139 4.139 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.071 4.071 26 C -0.196 4.196 27 C -0.052 4.052 28 N -0.234 5.234 29 C 0.005 3.995 30 C -0.006 4.006 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.199 0.801 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.197 0.803 43 H 0.205 0.795 44 H 0.193 0.807 45 H 0.184 0.816 46 H 0.089 0.911 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.674 -0.846 32.683 32.803 hybrid contribution 0.669 -0.833 -1.427 1.782 sum -2.005 -1.679 31.256 31.365 Atomic orbital electron populations 1.22460 0.97462 1.00661 1.01401 1.20360 0.93063 0.95177 0.84334 0.92280 1.42760 1.78482 1.10205 1.06752 1.19680 1.34196 0.94286 0.88318 0.90013 1.25627 1.03318 0.96841 1.01795 1.69864 1.52864 1.10574 1.29407 0.85120 0.77949 0.77374 0.79222 1.21458 1.22765 1.18979 1.22493 0.99480 0.93047 0.96448 0.91792 1.22866 1.04075 0.96971 0.91369 1.22503 1.03418 0.81696 0.94895 1.48561 1.72367 1.05905 1.07919 1.18276 0.75848 0.81479 0.88541 1.90773 1.51306 1.40954 1.62621 1.19707 1.01753 1.01263 0.91787 1.21847 0.95906 0.95474 0.93939 1.21301 0.99404 0.99298 0.93909 1.21689 0.92290 0.92504 1.01245 1.19168 1.00577 1.00674 0.92410 1.22035 0.91216 0.91307 1.02531 1.22269 1.02116 1.02162 0.93024 1.23523 0.92802 0.92739 0.96168 1.68052 1.06763 1.07734 1.40816 1.18913 0.94996 0.94867 0.90716 1.22189 1.00682 0.96488 0.81214 0.94406 0.89496 0.94425 0.80083 0.94321 0.87263 0.87831 0.87846 0.90658 0.82619 0.80372 0.80347 0.79538 0.80677 0.81647 0.91050 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 8.85 71.98 0.64 -4.79 16 2 C 0.18 6.88 2.84 44.99 0.13 7.01 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 N -0.74 -38.79 5.07 -322.93 -1.64 -40.43 16 5 C -0.23 -13.22 9.93 84.03 0.83 -12.39 16 6 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 8 N -0.98 -63.55 13.06 21.65 0.28 -63.27 16 9 Si 0.97 47.86 29.55 68.60 2.03 49.89 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 C -0.09 -3.13 3.07 -9.40 -0.03 -3.16 16 14 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.12 -2.36 6.31 31.80 0.20 -2.16 16 16 C 0.10 1.98 5.63 86.74 0.49 2.47 16 17 N -0.61 -20.13 3.33 -815.57 -2.71 -22.85 16 18 C 0.57 21.59 7.14 86.67 0.62 22.21 16 19 O -0.58 -28.39 16.77 -4.05 -0.07 -28.46 16 20 C -0.14 -4.10 5.45 -19.86 -0.11 -4.21 16 21 C -0.05 -0.90 8.50 22.54 0.19 -0.71 16 22 C -0.12 -1.21 9.93 21.98 0.22 -0.99 16 23 C -0.06 -0.60 9.75 22.37 0.22 -0.38 16 24 C -0.13 -2.33 5.74 -21.29 -0.12 -2.45 16 25 C -0.05 -0.56 9.89 22.52 0.22 -0.34 16 26 C -0.18 -2.58 10.03 22.14 0.22 -2.35 16 27 C 0.12 2.87 11.15 85.02 0.95 3.82 16 28 N -0.53 -17.92 9.35 -187.95 -1.76 -19.68 16 29 C 0.13 3.74 6.59 40.61 0.27 4.00 16 30 C 0.12 4.48 5.67 86.85 0.49 4.98 16 31 H 0.04 1.37 6.04 -2.39 -0.01 1.36 16 32 H 0.09 2.12 6.07 -2.38 -0.01 2.10 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.37 21.48 7.06 -92.71 -0.65 20.83 16 35 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.78 5.75 -2.38 -0.01 1.77 16 38 H 0.10 1.39 5.97 -2.39 -0.01 1.38 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.16 1.98 5.86 -2.91 -0.02 1.96 16 41 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 42 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 43 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 46 H 0.07 2.78 5.66 -2.38 -0.01 2.77 16 47 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 Total: -1.00 -92.95 377.75 2.38 -90.57 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.35 Total: 28.24 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.90 Total: 5.98 kcal Atomic # 7 Polarization: -140.40 SS G_CDS: -5.82 Total: -146.22 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.07 Total: -28.46 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -92.95 2.38 -90.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699941714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -92.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds