Wall clock time and date at job start Tue Mar 31 2020 23:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47224 * 2 1 4 4 N 1.46502 * 109.46856 * 239.99655 * 2 1 3 5 5 C 1.36943 * 119.99511 * 85.27470 * 4 2 1 6 6 H 1.07999 * 120.00127 * 359.72948 * 5 4 2 7 7 C 1.38811 * 119.99503 * 179.72265 * 5 4 2 8 8 N 1.31616 * 120.00562 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46949 * 60.00177 * 9 7 5 11 11 H 1.48497 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47388 * 300.00076 * 9 7 5 13 13 C 1.53000 * 109.47074 * 119.99984 * 2 1 3 14 14 H 1.09005 * 110.88613 * 60.70157 * 13 2 1 15 15 C 1.55156 * 111.00622 * 296.81817 * 13 2 1 16 16 C 1.54373 * 102.92187 * 206.45500 * 15 13 2 17 17 N 1.47030 * 107.28740 * 22.13875 * 16 15 13 18 18 C 1.34775 * 125.64445 * 181.05791 * 17 16 15 19 19 O 1.21602 * 119.99462 * 174.89128 * 18 17 16 20 20 C 1.47449 * 120.00099 * 354.88613 * 18 17 16 21 21 C 1.38862 * 120.46119 * 313.70113 * 20 18 17 22 22 C 1.38897 * 120.67265 * 179.76851 * 21 20 18 23 23 C 1.36381 * 121.27305 * 0.52226 * 22 21 20 24 24 C 1.40393 * 119.98525 * 359.74101 * 23 22 21 25 25 C 1.40462 * 121.95603 * 180.02562 * 24 23 22 26 26 N 1.31287 * 119.88500 * 179.97438 * 25 24 23 27 27 C 1.32550 * 122.73256 * 359.97438 * 26 25 24 28 28 C 1.36336 * 121.81885 * 0.02562 * 27 26 25 29 29 C 1.40292 * 118.70103 * 359.97438 * 28 27 26 30 30 C 1.47423 * 108.69939 * 1.09131 * 17 16 15 31 31 H 1.09003 * 109.46462 * 299.99752 * 1 2 3 32 32 H 1.08995 * 109.47344 * 59.99848 * 1 2 3 33 33 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00521 * 265.00237 * 4 2 1 35 35 H 0.96993 * 120.00659 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.71853 * 324.79116 * 15 13 2 37 37 H 1.08991 * 110.72175 * 88.05808 * 15 13 2 38 38 H 1.09000 * 109.84451 * 262.73298 * 16 15 13 39 39 H 1.09004 * 110.02781 * 141.64279 * 16 15 13 40 40 H 1.07997 * 119.66534 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.36390 * 180.24058 * 22 21 20 42 42 H 1.08000 * 120.00389 * 179.76591 * 23 22 21 43 43 H 1.08001 * 120.06217 * 359.94701 * 25 24 23 44 44 H 1.08001 * 119.09111 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.64942 * 179.97438 * 28 27 26 46 46 H 1.09003 * 110.36177 * 217.03012 * 30 17 16 47 47 H 1.08999 * 110.46036 * 94.76123 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1544 -0.0062 -2.3744 6 1 1.8976 1.0417 -2.4229 7 6 2.6225 -0.6592 -3.5063 8 7 2.9351 -1.9363 -3.4474 9 14 2.8088 0.2747 -5.1134 10 1 3.7633 1.3968 -4.9260 11 1 3.3221 -0.6426 -6.1623 12 1 1.4885 0.8122 -5.5295 13 6 2.0400 -0.7212 1.2492 14 1 1.6997 -1.7567 1.2663 15 6 1.6093 0.0271 2.5383 16 6 2.7021 -0.3745 3.5521 17 7 3.8821 -0.7911 2.7804 18 6 5.0440 -1.2345 3.3000 19 8 5.9231 -1.6407 2.5645 20 6 5.2491 -1.2269 4.7601 21 6 4.9178 -0.1072 5.5117 22 6 5.1047 -0.0970 6.8880 23 6 5.6262 -1.1756 7.5396 24 6 5.9804 -2.3271 6.8188 25 6 6.5201 -3.4612 7.4477 26 7 6.8366 -4.5166 6.7338 27 6 6.6692 -4.5698 5.4200 28 6 6.1530 -3.5211 4.7181 29 6 5.7910 -2.3578 5.4138 30 6 3.5842 -0.6427 1.3442 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1527 35 1 3.2618 -2.3928 -4.2384 36 1 1.6106 1.1052 2.3771 37 1 0.6290 -0.3126 2.8722 38 1 2.3499 -1.2027 4.1670 39 1 2.9546 0.4761 4.1853 40 1 4.5067 0.7630 5.0217 41 1 4.8361 0.7837 7.4524 42 1 5.7663 -1.1440 8.6101 43 1 6.6749 -3.4649 8.5165 44 1 6.9504 -5.4682 4.8907 45 1 6.0251 -3.5847 3.6477 46 1 4.0410 -1.4533 0.7764 47 1 3.9382 0.3214 0.9793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699958463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:40 Heat of formation + Delta-G solvation = 36.205872 kcal Electronic energy + Delta-G solvation = -28819.163277 eV Core-core repulsion = 24966.965510 eV Total energy + Delta-G solvation = -3852.197767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31714 -39.86713 -37.93003 -37.33430 -35.24401 -33.25201 -32.55733 -31.56384 -30.68851 -29.98992 -28.62759 -28.11048 -25.10869 -24.23136 -23.84526 -23.77072 -22.41988 -21.55967 -19.70547 -19.58556 -18.45936 -17.73128 -17.07378 -16.98237 -16.54114 -15.97584 -15.69573 -15.02066 -14.77269 -14.53603 -14.35777 -14.21453 -13.97664 -13.72617 -13.68455 -13.24597 -13.02946 -12.78716 -12.70862 -12.39049 -12.35150 -12.14397 -11.98497 -11.71985 -11.62929 -11.37447 -10.88788 -10.78940 -10.62798 -10.58584 -10.48350 -10.25007 -10.01055 -9.90003 -9.68190 -9.62934 -9.43452 -8.91517 -8.61292 -8.35652 -6.97248 -5.75869 -3.05287 -0.11550 0.56723 1.43719 2.46594 2.79506 3.01896 3.44238 3.48773 3.50005 3.78937 4.10088 4.18372 4.32596 4.38454 4.51984 4.55814 4.62058 4.62912 4.74865 4.85291 4.93781 5.05962 5.24287 5.29289 5.35102 5.45194 5.52563 5.54324 5.60692 5.62632 5.67299 5.84946 5.85265 5.88904 5.90368 6.00553 6.04192 6.12819 6.25449 6.26736 6.35840 6.36782 6.43863 6.52094 6.60186 6.82383 7.04555 7.49185 7.69303 7.70398 8.08243 8.42013 9.53345 10.09792 10.44116 11.46514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002571 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.454763 B =10890.177548 C =11836.594000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.570 3.430 19 O -0.526 6.526 20 C -0.111 4.111 21 C -0.064 4.064 22 C -0.125 4.125 23 C -0.068 4.068 24 C -0.117 4.117 25 C 0.142 3.858 26 N -0.486 5.486 27 C 0.078 3.922 28 C -0.143 4.143 29 C 0.009 3.991 30 C 0.119 3.881 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.086 0.914 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 2.773 26.373 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.162 4.162 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.359 3.641 19 O -0.403 6.403 20 C -0.114 4.114 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.088 4.088 24 C -0.119 4.119 25 C -0.030 4.030 26 N -0.194 5.194 27 C -0.065 4.065 28 C -0.163 4.163 29 C 0.003 3.997 30 C -0.002 4.002 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.104 0.896 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.036 1.819 26.099 26.241 hybrid contribution -0.253 0.980 -1.412 1.737 sum 1.784 2.799 24.687 24.909 Atomic orbital electron populations 1.22442 0.99067 1.00904 0.99988 1.20148 0.91938 0.95117 0.85321 0.93312 1.42411 1.78174 1.10643 1.05330 1.19145 1.36737 0.93790 0.87440 0.91292 1.24729 1.02042 0.95945 0.98048 1.69638 1.50532 1.08666 1.29083 0.86303 0.77722 0.78660 0.83693 1.21287 1.21731 1.21340 1.22678 0.93754 1.00613 0.95124 0.90039 1.22698 0.97578 1.01349 0.94623 1.22224 0.85914 0.99477 0.94995 1.48519 1.12755 1.64049 1.09072 1.17686 0.81532 0.77892 0.87038 1.90843 1.42133 1.46327 1.60969 1.19896 1.02952 0.95245 0.93353 1.21537 0.95613 0.97262 0.93969 1.20843 1.00279 0.99160 0.94046 1.21136 0.95774 0.91782 1.00091 1.18983 1.02740 0.96961 0.93201 1.23209 0.92606 0.87273 0.99911 1.67433 1.16019 1.27586 1.08341 1.22284 0.96153 0.98536 0.89536 1.22199 0.98728 0.92896 1.02447 1.17879 0.95810 0.93570 0.92451 1.22323 0.95707 1.03127 0.79063 0.94396 0.92744 0.93511 0.78255 0.93434 0.90233 0.89942 0.91566 0.91436 0.84645 0.84805 0.84508 0.81821 0.82627 0.83307 0.89552 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.31 37.16 0.35 -2.36 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.20 16 3 H 0.05 0.90 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -17.33 4.90 -53.42 -0.26 -17.59 16 5 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 9 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.10 -1.52 2.64 -88.47 -0.23 -1.75 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.33 5.44 -24.87 -0.14 -1.46 16 16 C 0.10 1.00 5.95 -3.03 -0.02 0.98 16 17 N -0.61 -8.62 3.33 -171.74 -0.57 -9.19 16 18 C 0.57 8.83 6.91 -12.51 -0.09 8.75 16 19 O -0.53 -10.19 15.47 5.28 0.08 -10.11 16 20 C -0.11 -1.39 5.37 -104.70 -0.56 -1.95 16 21 C -0.06 -0.58 8.42 -39.11 -0.33 -0.91 16 22 C -0.13 -0.86 9.92 -40.01 -0.40 -1.26 16 23 C -0.07 -0.47 9.79 -39.44 -0.39 -0.86 16 24 C -0.12 -1.15 5.74 -106.89 -0.61 -1.77 16 25 C 0.14 1.32 11.05 -16.95 -0.19 1.13 16 26 N -0.49 -5.63 10.30 -13.11 -0.14 -5.76 16 27 C 0.08 0.91 11.07 -17.93 -0.20 0.71 16 28 C -0.14 -1.88 9.23 -39.49 -0.36 -2.25 16 29 C 0.01 0.11 5.76 -106.55 -0.61 -0.51 16 30 C 0.12 1.97 6.19 -2.53 -0.02 1.96 16 31 H 0.04 0.50 7.38 -51.93 -0.38 0.11 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.08 0.76 8.12 -51.93 -0.42 0.33 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.54 5.84 -51.93 -0.30 0.24 16 40 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.15 2.16 6.28 -52.49 -0.33 1.84 16 46 H 0.09 1.71 7.99 -51.93 -0.41 1.30 16 47 H 0.07 1.29 8.02 -51.93 -0.42 0.87 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -33.80 383.33 -10.30 -44.09 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.68 Total: 8.16 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.20 Total: -5.39 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.24 Total: -59.85 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.80 -10.30 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699958463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.300 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds