Wall clock time and date at job start Tue Mar 31 2020 23:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47224 * 2 1 4 4 N 1.46502 * 109.46856 * 239.99655 * 2 1 3 5 5 C 1.36943 * 119.99511 * 85.27470 * 4 2 1 6 6 H 1.07999 * 120.00127 * 359.72948 * 5 4 2 7 7 C 1.38811 * 119.99503 * 179.72265 * 5 4 2 8 8 N 1.31616 * 120.00562 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46949 * 60.00177 * 9 7 5 11 11 H 1.48497 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47388 * 300.00076 * 9 7 5 13 13 C 1.53000 * 109.47074 * 119.99984 * 2 1 3 14 14 H 1.09005 * 110.88613 * 60.70157 * 13 2 1 15 15 C 1.55156 * 111.00622 * 296.81817 * 13 2 1 16 16 C 1.54373 * 102.92187 * 206.45500 * 15 13 2 17 17 N 1.47030 * 107.28740 * 22.13875 * 16 15 13 18 18 C 1.34775 * 125.64445 * 181.05791 * 17 16 15 19 19 O 1.21602 * 119.99462 * 174.89128 * 18 17 16 20 20 C 1.47449 * 120.00099 * 354.88613 * 18 17 16 21 21 C 1.38862 * 120.46119 * 313.70113 * 20 18 17 22 22 C 1.38897 * 120.67265 * 179.76851 * 21 20 18 23 23 C 1.36381 * 121.27305 * 0.52226 * 22 21 20 24 24 C 1.40393 * 119.98525 * 359.74101 * 23 22 21 25 25 C 1.40462 * 121.95603 * 180.02562 * 24 23 22 26 26 N 1.31287 * 119.88500 * 179.97438 * 25 24 23 27 27 C 1.32550 * 122.73256 * 359.97438 * 26 25 24 28 28 C 1.36336 * 121.81885 * 0.02562 * 27 26 25 29 29 C 1.40292 * 118.70103 * 359.97438 * 28 27 26 30 30 C 1.47423 * 108.69939 * 1.09131 * 17 16 15 31 31 H 1.09003 * 109.46462 * 299.99752 * 1 2 3 32 32 H 1.08995 * 109.47344 * 59.99848 * 1 2 3 33 33 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00521 * 265.00237 * 4 2 1 35 35 H 0.96993 * 120.00659 * 179.97438 * 8 7 5 36 36 H 1.09005 * 110.71853 * 324.79116 * 15 13 2 37 37 H 1.08991 * 110.72175 * 88.05808 * 15 13 2 38 38 H 1.09000 * 109.84451 * 262.73298 * 16 15 13 39 39 H 1.09004 * 110.02781 * 141.64279 * 16 15 13 40 40 H 1.07997 * 119.66534 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.36390 * 180.24058 * 22 21 20 42 42 H 1.08000 * 120.00389 * 179.76591 * 23 22 21 43 43 H 1.08001 * 120.06217 * 359.94701 * 25 24 23 44 44 H 1.08001 * 119.09111 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.64942 * 179.97438 * 28 27 26 46 46 H 1.09003 * 110.36177 * 217.03012 * 30 17 16 47 47 H 1.08999 * 110.46036 * 94.76123 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1544 -0.0062 -2.3744 6 1 1.8976 1.0417 -2.4229 7 6 2.6225 -0.6592 -3.5063 8 7 2.9351 -1.9363 -3.4474 9 14 2.8088 0.2747 -5.1134 10 1 3.7633 1.3968 -4.9260 11 1 3.3221 -0.6426 -6.1623 12 1 1.4885 0.8122 -5.5295 13 6 2.0400 -0.7212 1.2492 14 1 1.6997 -1.7567 1.2663 15 6 1.6093 0.0271 2.5383 16 6 2.7021 -0.3745 3.5521 17 7 3.8821 -0.7911 2.7804 18 6 5.0440 -1.2345 3.3000 19 8 5.9231 -1.6407 2.5645 20 6 5.2491 -1.2269 4.7601 21 6 4.9178 -0.1072 5.5117 22 6 5.1047 -0.0970 6.8880 23 6 5.6262 -1.1756 7.5396 24 6 5.9804 -2.3271 6.8188 25 6 6.5201 -3.4612 7.4477 26 7 6.8366 -4.5166 6.7338 27 6 6.6692 -4.5698 5.4200 28 6 6.1530 -3.5211 4.7181 29 6 5.7910 -2.3578 5.4138 30 6 3.5842 -0.6427 1.3442 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1527 35 1 3.2618 -2.3928 -4.2384 36 1 1.6106 1.1052 2.3771 37 1 0.6290 -0.3126 2.8722 38 1 2.3499 -1.2027 4.1670 39 1 2.9546 0.4761 4.1853 40 1 4.5067 0.7630 5.0217 41 1 4.8361 0.7837 7.4524 42 1 5.7663 -1.1440 8.6101 43 1 6.6749 -3.4649 8.5165 44 1 6.9504 -5.4682 4.8907 45 1 6.0251 -3.5847 3.6477 46 1 4.0410 -1.4533 0.7764 47 1 3.9382 0.3214 0.9793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699958463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:39 Heat of formation + Delta-G solvation = 14.137171 kcal Electronic energy + Delta-G solvation = -28820.120248 eV Core-core repulsion = 24966.965510 eV Total energy + Delta-G solvation = -3853.154738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.16057 -40.93476 -39.13516 -38.15444 -36.82473 -34.39193 -33.97306 -32.50461 -31.93848 -30.89096 -30.05256 -29.45843 -26.09340 -25.82709 -24.99631 -24.54316 -23.33771 -22.90918 -21.10561 -20.59876 -19.33600 -19.05396 -18.52625 -17.82937 -17.53803 -17.18427 -16.70998 -16.48809 -15.75694 -15.72235 -15.44662 -15.30082 -15.09848 -15.04579 -14.72961 -14.49381 -14.22824 -13.99870 -13.66973 -13.62057 -13.45693 -13.14783 -13.09147 -12.90687 -12.80948 -12.67158 -12.51603 -12.38180 -12.26198 -12.03395 -11.71620 -11.54839 -11.41549 -11.28820 -11.06545 -10.93073 -10.55273 -10.16163 -9.77434 -9.13909 -8.99908 -7.93173 -5.20977 -0.85187 -0.17219 0.60388 1.44833 1.47920 1.52420 1.53668 1.81304 2.08282 2.55796 3.01182 3.23803 3.40640 3.43747 3.53772 3.62374 3.68095 3.74944 3.81735 3.86357 3.90878 4.13069 4.15081 4.27653 4.34122 4.40444 4.49755 4.55605 4.62958 4.64320 4.71888 4.73666 4.85038 4.85772 4.87648 4.94825 5.05571 5.09466 5.10665 5.19050 5.26354 5.30543 5.35648 5.40243 5.52794 5.58369 5.64860 5.76960 6.28716 6.38794 6.90556 6.93801 7.34338 8.12545 8.33127 9.30435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002571 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.454763 B =10890.177548 C =11836.594000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.050 0.950 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.275 1.275 13 C -0.093 4.093 14 H 0.070 0.930 15 C -0.110 4.110 16 C 0.094 3.906 17 N -0.610 5.610 18 C 0.564 3.436 19 O -0.586 6.586 20 C -0.151 4.151 21 C -0.043 4.043 22 C -0.123 4.123 23 C -0.043 4.043 24 C -0.131 4.131 25 C 0.158 3.842 26 N -0.513 5.513 27 C 0.077 3.923 28 C -0.180 4.180 29 C -0.009 4.009 30 C 0.124 3.876 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.368 0.632 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.153 0.847 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.211 0.789 44 H 0.162 0.838 45 H 0.115 0.885 46 H 0.035 0.965 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 5.987 31.485 32.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.379 5.379 5 C -0.363 4.363 6 H 0.096 0.904 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.798 3.202 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.201 1.201 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.148 4.148 16 C -0.027 4.027 17 N -0.341 5.341 18 C 0.355 3.645 19 O -0.467 6.467 20 C -0.154 4.154 21 C -0.062 4.062 22 C -0.141 4.141 23 C -0.063 4.063 24 C -0.133 4.133 25 C -0.014 4.014 26 N -0.221 5.221 27 C -0.065 4.065 28 C -0.200 4.200 29 C -0.014 4.014 30 C 0.001 3.999 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.170 0.830 41 H 0.196 0.804 42 H 0.203 0.797 43 H 0.227 0.773 44 H 0.179 0.821 45 H 0.133 0.867 46 H 0.053 0.947 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.261 5.091 31.264 31.677 hybrid contribution 0.275 0.064 -2.805 2.819 sum 0.536 5.155 28.459 28.927 Atomic orbital electron populations 1.22273 0.96840 1.00859 1.01253 1.20430 0.93268 0.94792 0.84398 0.93231 1.42677 1.78487 1.10141 1.06582 1.19575 1.34230 0.94151 0.88362 0.90390 1.25538 1.03338 0.96832 1.01542 1.69818 1.52849 1.10388 1.29370 0.85276 0.78011 0.77258 0.79648 1.20605 1.22714 1.20103 1.22490 0.92112 1.00464 0.96265 0.91152 1.22745 0.98948 1.01725 0.91411 1.22524 0.84041 1.01244 0.94877 1.48584 1.13727 1.63664 1.08168 1.18385 0.80938 0.76620 0.88593 1.90794 1.44225 1.48921 1.62794 1.19643 1.07192 0.97330 0.91232 1.21874 0.93232 0.95941 0.95181 1.21323 0.99269 1.00647 0.92825 1.21710 0.92574 0.89819 1.02164 1.19293 1.03405 0.98707 0.91926 1.24019 0.89708 0.86038 1.01610 1.67520 1.17780 1.29042 1.07785 1.22376 0.95568 0.98357 0.90190 1.22009 1.01957 0.94873 1.01148 1.18106 0.96027 0.93148 0.94141 1.22025 0.96909 1.00290 0.80672 0.89787 0.94711 0.94226 0.80041 0.94342 0.88493 0.87029 0.90351 0.87898 0.82961 0.80383 0.79737 0.77298 0.82053 0.86683 0.94654 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.31 71.98 0.67 -4.10 16 2 C 0.18 6.50 2.40 44.99 0.11 6.61 16 3 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 4 N -0.74 -36.86 4.90 -322.93 -1.58 -38.44 16 5 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 8 N -0.97 -61.70 13.06 21.65 0.28 -61.41 16 9 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 C -0.09 -2.80 2.64 -9.40 -0.02 -2.82 16 14 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 15 C -0.11 -1.99 5.44 31.80 0.17 -1.81 16 16 C 0.09 1.69 5.95 86.74 0.52 2.20 16 17 N -0.61 -17.80 3.33 -815.52 -2.71 -20.51 16 18 C 0.56 18.84 6.91 86.67 0.60 19.43 16 19 O -0.59 -25.72 15.47 -4.04 -0.06 -25.78 16 20 C -0.15 -3.75 5.37 -19.92 -0.11 -3.86 16 21 C -0.04 -0.63 8.42 22.58 0.19 -0.44 16 22 C -0.12 -0.95 9.92 21.99 0.22 -0.73 16 23 C -0.04 -0.35 9.79 22.36 0.22 -0.13 16 24 C -0.13 -2.23 5.74 -21.33 -0.12 -2.36 16 25 C 0.16 2.48 11.05 85.32 0.94 3.43 16 26 N -0.51 -11.63 10.30 -195.39 -2.01 -13.64 16 27 C 0.08 1.97 11.07 84.14 0.93 2.90 16 28 C -0.18 -5.31 9.23 22.33 0.21 -5.10 16 29 C -0.01 -0.22 5.76 -21.11 -0.12 -0.34 16 30 C 0.12 4.42 6.19 86.85 0.54 4.96 16 31 H 0.08 1.86 7.38 -2.39 -0.02 1.84 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.37 20.39 7.80 -92.71 -0.72 19.67 16 35 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.10 1.49 8.04 -2.38 -0.02 1.47 16 37 H 0.11 1.46 8.12 -2.39 -0.02 1.44 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.16 5.84 -2.39 -0.01 1.15 16 40 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 41 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 42 H 0.19 -0.20 8.06 -2.91 -0.02 -0.23 16 43 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 45 H 0.12 4.06 6.28 -2.91 -0.02 4.04 16 46 H 0.03 1.59 7.99 -2.39 -0.02 1.57 16 47 H 0.06 2.27 8.02 -2.39 -0.02 2.25 16 Total: -1.00 -84.25 383.33 2.45 -81.80 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.27 Total: 27.09 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 6.24 Total: 1.59 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -6.02 Total: -134.01 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -84.25 2.45 -81.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699958463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.939 kcal (2) G-P(sol) polarization free energy of solvation -84.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds