Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.79926 * 2 1 4 4 C 1.54944 * 110.73466 * 123.28802 * 2 1 3 5 5 N 1.48124 * 103.25326 * 155.71627 * 4 2 1 6 6 C 1.34774 * 127.03737 * 140.67180 * 5 4 2 7 7 O 1.21561 * 120.00318 * 176.25485 * 6 5 4 8 8 C 1.47769 * 119.99652 * 356.25860 * 6 5 4 9 9 C 1.40629 * 119.79982 * 214.38675 * 8 6 5 10 10 C 1.35701 * 120.91841 * 179.72896 * 9 8 6 11 11 C 1.40766 * 120.11261 * 0.56743 * 10 9 8 12 12 N 1.33640 * 120.83032 * 179.67366 * 11 10 9 13 13 C 1.31121 * 121.39242 * 180.02562 * 12 11 10 14 14 C 1.39309 * 121.77176 * 0.02562 * 13 12 11 15 15 C 1.36580 * 119.90157 * 359.97438 * 14 13 12 16 16 C 1.40891 * 118.16297 * 0.03954 * 15 14 13 17 17 C 1.38549 * 119.80513 * 34.65896 * 8 6 5 18 18 C 1.47490 * 105.92915 * 320.70983 * 5 4 2 19 19 C 1.54005 * 107.08586 * 25.44565 * 18 5 4 20 20 H 1.08997 * 110.32338 * 239.80005 * 19 18 5 21 21 C 1.52998 * 110.32453 * 117.69145 * 19 18 5 22 22 N 1.46499 * 109.47278 * 67.83449 * 21 19 18 23 23 C 1.36939 * 119.99710 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99797 * 180.02562 * 23 22 21 26 26 N 1.31624 * 119.99926 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00006 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47036 * 59.99810 * 27 25 23 29 29 H 1.48504 * 109.46937 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47160 * 299.99828 * 27 25 23 31 31 H 1.09002 * 109.47476 * 183.28977 * 1 2 3 32 32 H 1.09005 * 109.47458 * 303.29448 * 1 2 3 33 33 H 1.09002 * 109.47178 * 63.29261 * 1 2 3 34 34 H 1.08994 * 110.66299 * 37.27543 * 4 2 1 35 35 H 1.08993 * 110.80624 * 274.22214 * 4 2 1 36 36 H 1.07999 * 119.53961 * 359.97438 * 9 8 6 37 37 H 1.08004 * 119.94880 * 180.25961 * 10 9 8 38 38 H 1.08010 * 119.11386 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.04703 * 180.02562 * 14 13 12 40 40 H 1.08007 * 120.91789 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.30017 * 359.97438 * 17 8 6 42 42 H 1.09006 * 109.91075 * 266.08401 * 18 5 4 43 43 H 1.08999 * 110.07407 * 144.89649 * 18 5 4 44 44 H 1.09007 * 109.47017 * 187.83427 * 21 19 18 45 45 H 1.09003 * 109.47057 * 307.83532 * 21 19 18 46 46 H 0.96998 * 120.00330 * 0.02562 * 22 21 19 47 47 H 0.96998 * 119.99616 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7953 1.2113 5 7 3.4279 -1.2099 0.7624 6 6 4.5538 -1.2471 1.5023 7 8 5.5842 -1.6752 1.0200 8 6 4.5355 -0.7675 2.8999 9 6 5.6681 -0.1273 3.4339 10 6 5.6741 0.3269 4.7127 11 6 4.5418 0.1505 5.5301 12 7 4.5345 0.5863 6.7934 13 6 3.4861 0.4275 7.5647 14 6 2.3295 -0.2018 7.1099 15 6 2.2687 -0.6715 5.8288 16 6 3.3973 -0.4993 5.0032 17 6 3.4049 -0.9563 3.6780 18 6 3.2875 -1.5728 -0.6602 19 6 2.0775 -0.7937 -1.2086 20 1 1.3211 -1.4835 -1.5828 21 6 2.5196 0.1620 -2.3186 22 7 2.9558 -0.6114 -3.4839 23 6 3.3978 0.0342 -4.6077 24 1 3.4244 1.1136 -4.6352 25 6 3.8106 -0.6985 -5.7120 26 7 3.7777 -2.0140 -5.6787 27 14 4.4129 0.1821 -7.2453 28 1 5.5942 1.0155 -6.9057 29 1 4.7932 -0.8191 -8.2740 30 1 3.3306 1.0501 -7.7749 31 1 -0.3634 -1.0260 0.0590 32 1 -0.3634 0.5641 0.8590 33 1 -0.3634 0.4619 -0.9180 34 1 1.4558 -1.6667 1.4132 35 1 2.1455 -0.1593 2.0939 36 1 6.5437 0.0083 2.8165 37 1 6.5510 0.8201 5.1055 38 1 3.5202 0.7945 8.5800 39 1 1.4818 -0.3174 7.7691 40 1 1.3805 -1.1623 5.4593 41 1 2.5374 -1.4517 3.2676 42 1 3.1125 -2.6446 -0.7544 43 1 4.1877 -1.2942 -1.2080 44 1 1.6842 0.8032 -2.6001 45 1 3.3454 0.7771 -1.9610 46 1 2.9309 -1.5808 -3.4597 47 1 4.0665 -2.5260 -6.4503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699966186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = 39.380080 kcal Electronic energy + Delta-G solvation = -28579.671228 eV Core-core repulsion = 24727.611105 eV Total energy + Delta-G solvation = -3852.060123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.30019 -40.10784 -38.15032 -36.86474 -34.71919 -33.93992 -32.91438 -31.49831 -31.03787 -30.59690 -28.88867 -26.65876 -25.82417 -24.82175 -24.02444 -23.18754 -22.57030 -21.24557 -20.39982 -19.60578 -18.53667 -17.65965 -17.22934 -17.07620 -16.36649 -16.04800 -15.40122 -15.02594 -14.75648 -14.63933 -14.51699 -14.37162 -13.87905 -13.75009 -13.57568 -13.45239 -13.30947 -12.92198 -12.78619 -12.74458 -12.36834 -12.09299 -12.00647 -11.77008 -11.71974 -11.45107 -11.09566 -10.97996 -10.85284 -10.62112 -10.51821 -10.35312 -10.02589 -9.98902 -9.83971 -9.65295 -9.17170 -8.87011 -8.67710 -8.59845 -6.91997 -5.74961 -3.04040 -0.12550 0.34409 1.53713 2.21523 2.82044 3.06588 3.45846 3.50169 3.51207 3.73186 3.87779 4.12434 4.22375 4.31405 4.42462 4.48125 4.59283 4.64848 4.69674 4.79304 4.89242 4.93508 5.05589 5.25946 5.26819 5.35732 5.42497 5.46794 5.47784 5.54133 5.59453 5.64473 5.67056 5.73973 5.86558 5.91931 5.99746 6.04959 6.09460 6.12482 6.15557 6.24852 6.38345 6.42557 6.43128 6.70790 6.84834 7.49689 7.51608 7.70810 8.11293 8.43595 9.54797 10.11258 10.45842 11.47747 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002357 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.311039 B =11877.593125 C =12652.365746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.092 3.908 5 N -0.611 5.611 6 C 0.570 3.430 7 O -0.527 6.527 8 C -0.111 4.111 9 C -0.054 4.054 10 C -0.098 4.098 11 C 0.140 3.860 12 N -0.477 5.477 13 C 0.137 3.863 14 C -0.180 4.180 15 C -0.049 4.049 16 C -0.110 4.110 17 C -0.067 4.067 18 C 0.112 3.888 19 C -0.102 4.102 20 H 0.088 0.912 21 C 0.163 3.837 22 N -0.732 5.732 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.908 3.092 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.022 0.978 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 3.304 28.323 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.031 4.031 5 N -0.344 5.344 6 C 0.359 3.641 7 O -0.404 6.404 8 C -0.114 4.114 9 C -0.074 4.074 10 C -0.116 4.116 11 C 0.019 3.981 12 N -0.185 5.185 13 C -0.036 4.036 14 C -0.200 4.200 15 C -0.075 4.075 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.010 4.010 19 C -0.122 4.122 20 H 0.106 0.894 21 C 0.035 3.965 22 N -0.377 5.377 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.096 3.583 28.192 29.065 hybrid contribution -0.526 -0.327 -1.184 1.336 sum -6.622 3.256 27.008 27.998 Atomic orbital electron populations 1.21735 0.93764 1.02018 1.02228 1.22300 0.96089 0.99782 0.93800 0.89644 1.22995 0.83128 0.98747 0.98246 1.48717 1.07888 1.65378 1.12455 1.17821 0.82407 0.78921 0.84973 1.90844 1.30789 1.46304 1.72429 1.19977 0.95202 1.01873 0.94314 1.20901 0.97275 0.94213 0.95025 1.20721 0.97513 1.00598 0.92781 1.19010 0.93284 0.94993 0.90857 1.68075 1.28264 1.18030 1.04096 1.23040 0.88174 0.93039 0.99359 1.21901 1.00197 1.00937 0.96970 1.21547 0.97052 0.95493 0.93403 1.18757 0.95589 1.01746 0.95129 1.21731 0.97426 0.97196 0.92242 1.22225 1.00507 0.98942 0.79289 1.22398 0.96555 0.97983 0.95247 0.89390 1.20697 0.96310 0.92797 0.86697 1.42353 1.78049 1.05692 1.11564 1.19156 1.35357 0.91211 0.91476 0.91292 1.24742 1.02242 0.95479 0.98436 1.69646 1.53744 1.04092 1.30628 0.86263 0.78653 0.78280 0.82957 1.21256 1.21679 1.21295 0.92378 0.92693 0.91641 0.90539 0.89797 0.84025 0.83997 0.82270 0.84291 0.84086 0.83953 0.91502 0.88947 0.96013 0.96276 0.78245 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.16 37.16 0.34 -0.92 16 2 C -0.10 -1.12 3.21 -88.75 -0.28 -1.41 16 3 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 4 C 0.09 0.92 4.74 -2.12 -0.01 0.91 16 5 N -0.61 -8.60 3.29 -170.89 -0.56 -9.16 16 6 C 0.57 8.84 7.57 -12.36 -0.09 8.74 16 7 O -0.53 -10.37 17.15 5.31 0.09 -10.28 16 8 C -0.11 -1.36 5.60 -104.98 -0.59 -1.94 16 9 C -0.05 -0.62 9.49 -39.59 -0.38 -1.00 16 10 C -0.10 -1.02 9.95 -39.53 -0.39 -1.42 16 11 C 0.14 1.51 6.61 -84.78 -0.56 0.95 16 12 N -0.48 -4.89 10.33 -10.91 -0.11 -5.00 16 13 C 0.14 0.97 11.14 -17.46 -0.19 0.77 16 14 C -0.18 -1.02 10.03 -39.78 -0.40 -1.42 16 15 C -0.05 -0.33 9.89 -39.18 -0.39 -0.71 16 16 C -0.11 -1.04 5.74 -106.82 -0.61 -1.65 16 17 C -0.07 -0.64 7.50 -38.74 -0.29 -0.93 16 18 C 0.11 1.83 6.35 -2.98 -0.02 1.82 16 19 C -0.10 -1.54 2.62 -89.25 -0.23 -1.78 16 20 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 21 C 0.16 3.19 5.33 -4.04 -0.02 3.17 16 22 N -0.73 -18.41 5.38 -59.90 -0.32 -18.73 16 23 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 27 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 35 H 0.08 0.71 5.58 -51.93 -0.29 0.42 16 36 H 0.14 1.60 7.97 -52.49 -0.42 1.19 16 37 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.16 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.14 0.37 8.06 -52.48 -0.42 -0.06 16 40 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 41 H 0.14 1.08 5.68 -52.49 -0.30 0.79 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.87 7.56 -51.93 -0.39 1.48 16 44 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.38 10.10 7.56 -40.82 -0.31 9.79 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -35.24 385.68 -10.47 -45.71 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.71 Total: 5.91 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.37 Total: -4.24 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.27 Total: -60.60 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.24 -10.47 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.093 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds