Wall clock time and date at job start Tue Mar 31 2020 22:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.79926 * 2 1 4 4 C 1.54944 * 110.73466 * 123.28802 * 2 1 3 5 5 N 1.48124 * 103.25326 * 155.71627 * 4 2 1 6 6 C 1.34774 * 127.03737 * 140.67180 * 5 4 2 7 7 O 1.21561 * 120.00318 * 176.25485 * 6 5 4 8 8 C 1.47769 * 119.99652 * 356.25860 * 6 5 4 9 9 C 1.40629 * 119.79982 * 214.38675 * 8 6 5 10 10 C 1.35701 * 120.91841 * 179.72896 * 9 8 6 11 11 C 1.40766 * 120.11261 * 0.56743 * 10 9 8 12 12 N 1.33640 * 120.83032 * 179.67366 * 11 10 9 13 13 C 1.31121 * 121.39242 * 180.02562 * 12 11 10 14 14 C 1.39309 * 121.77176 * 0.02562 * 13 12 11 15 15 C 1.36580 * 119.90157 * 359.97438 * 14 13 12 16 16 C 1.40891 * 118.16297 * 0.03954 * 15 14 13 17 17 C 1.38549 * 119.80513 * 34.65896 * 8 6 5 18 18 C 1.47490 * 105.92915 * 320.70983 * 5 4 2 19 19 C 1.54005 * 107.08586 * 25.44565 * 18 5 4 20 20 H 1.08997 * 110.32338 * 239.80005 * 19 18 5 21 21 C 1.52998 * 110.32453 * 117.69145 * 19 18 5 22 22 N 1.46499 * 109.47278 * 67.83449 * 21 19 18 23 23 C 1.36939 * 119.99710 * 179.97438 * 22 21 19 24 24 H 1.08000 * 120.00053 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99797 * 180.02562 * 23 22 21 26 26 N 1.31624 * 119.99926 * 359.97438 * 25 23 22 27 27 Si 1.86794 * 120.00006 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47036 * 59.99810 * 27 25 23 29 29 H 1.48504 * 109.46937 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47160 * 299.99828 * 27 25 23 31 31 H 1.09002 * 109.47476 * 183.28977 * 1 2 3 32 32 H 1.09005 * 109.47458 * 303.29448 * 1 2 3 33 33 H 1.09002 * 109.47178 * 63.29261 * 1 2 3 34 34 H 1.08994 * 110.66299 * 37.27543 * 4 2 1 35 35 H 1.08993 * 110.80624 * 274.22214 * 4 2 1 36 36 H 1.07999 * 119.53961 * 359.97438 * 9 8 6 37 37 H 1.08004 * 119.94880 * 180.25961 * 10 9 8 38 38 H 1.08010 * 119.11386 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.04703 * 180.02562 * 14 13 12 40 40 H 1.08007 * 120.91789 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.30017 * 359.97438 * 17 8 6 42 42 H 1.09006 * 109.91075 * 266.08401 * 18 5 4 43 43 H 1.08999 * 110.07407 * 144.89649 * 18 5 4 44 44 H 1.09007 * 109.47017 * 187.83427 * 21 19 18 45 45 H 1.09003 * 109.47057 * 307.83532 * 21 19 18 46 46 H 0.96998 * 120.00330 * 0.02562 * 22 21 19 47 47 H 0.96998 * 119.99616 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7953 1.2113 5 7 3.4279 -1.2099 0.7624 6 6 4.5538 -1.2471 1.5023 7 8 5.5842 -1.6752 1.0200 8 6 4.5355 -0.7675 2.8999 9 6 5.6681 -0.1273 3.4339 10 6 5.6741 0.3269 4.7127 11 6 4.5418 0.1505 5.5301 12 7 4.5345 0.5863 6.7934 13 6 3.4861 0.4275 7.5647 14 6 2.3295 -0.2018 7.1099 15 6 2.2687 -0.6715 5.8288 16 6 3.3973 -0.4993 5.0032 17 6 3.4049 -0.9563 3.6780 18 6 3.2875 -1.5728 -0.6602 19 6 2.0775 -0.7937 -1.2086 20 1 1.3211 -1.4835 -1.5828 21 6 2.5196 0.1620 -2.3186 22 7 2.9558 -0.6114 -3.4839 23 6 3.3978 0.0342 -4.6077 24 1 3.4244 1.1136 -4.6352 25 6 3.8106 -0.6985 -5.7120 26 7 3.7777 -2.0140 -5.6787 27 14 4.4129 0.1821 -7.2453 28 1 5.5942 1.0155 -6.9057 29 1 4.7932 -0.8191 -8.2740 30 1 3.3306 1.0501 -7.7749 31 1 -0.3634 -1.0260 0.0590 32 1 -0.3634 0.5641 0.8590 33 1 -0.3634 0.4619 -0.9180 34 1 1.4558 -1.6667 1.4132 35 1 2.1455 -0.1593 2.0939 36 1 6.5437 0.0083 2.8165 37 1 6.5510 0.8201 5.1055 38 1 3.5202 0.7945 8.5800 39 1 1.4818 -0.3174 7.7691 40 1 1.3805 -1.1623 5.4593 41 1 2.5374 -1.4517 3.2676 42 1 3.1125 -2.6446 -0.7544 43 1 4.1877 -1.2942 -1.2080 44 1 1.6842 0.8032 -2.6001 45 1 3.3454 0.7771 -1.9610 46 1 2.9309 -1.5808 -3.4597 47 1 4.0665 -2.5260 -6.4503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699966186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:51 Heat of formation + Delta-G solvation = 16.368098 kcal Electronic energy + Delta-G solvation = -28580.669103 eV Core-core repulsion = 24727.611105 eV Total energy + Delta-G solvation = -3853.057997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06614 -41.11890 -39.29426 -37.72572 -36.50183 -34.68522 -34.15220 -33.09538 -31.89853 -31.41314 -30.30420 -27.61640 -27.19282 -25.78627 -25.07511 -24.53403 -23.32002 -22.54580 -21.36474 -20.82665 -19.40786 -19.11269 -18.43208 -17.93039 -17.47394 -16.96500 -16.69918 -16.33814 -15.84461 -15.58082 -15.48419 -15.29116 -15.19554 -15.17913 -14.85913 -14.38626 -14.13688 -14.08690 -13.88411 -13.70048 -13.39057 -13.23261 -13.02919 -12.91877 -12.76699 -12.71360 -12.53573 -12.48104 -12.20896 -11.95997 -11.86236 -11.60189 -11.50497 -11.36136 -11.16085 -10.96014 -10.47488 -9.96252 -9.75067 -9.35139 -9.02971 -7.97504 -5.26522 -0.79881 -0.33865 0.88096 1.34913 1.44175 1.47948 1.53859 1.73233 2.11911 2.53640 3.05322 3.18915 3.33924 3.36441 3.45916 3.51228 3.68498 3.73068 3.75471 3.96720 4.00648 4.06667 4.17032 4.20982 4.31083 4.41168 4.47668 4.51351 4.54813 4.63051 4.70908 4.75794 4.81274 4.85145 4.88912 4.92574 4.98085 5.03579 5.08602 5.19537 5.23418 5.24925 5.26673 5.38271 5.45654 5.46385 5.56292 5.76415 6.24626 6.40219 6.91122 6.94314 7.30953 8.06261 8.29477 9.25693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002357 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.311039 B =11877.593125 C =12652.365746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 H 0.078 0.922 4 C 0.093 3.907 5 N -0.610 5.610 6 C 0.566 3.434 7 O -0.587 6.587 8 C -0.137 4.137 9 C -0.069 4.069 10 C -0.103 4.103 11 C 0.123 3.877 12 N -0.514 5.514 13 C 0.138 3.862 14 C -0.171 4.171 15 C -0.046 4.046 16 C -0.124 4.124 17 C -0.042 4.042 18 C 0.116 3.884 19 C -0.091 4.091 20 H 0.095 0.905 21 C 0.163 3.837 22 N -0.744 5.744 23 C -0.248 4.248 24 H 0.073 0.927 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.974 3.026 28 H -0.282 1.282 29 H -0.294 1.294 30 H -0.273 1.273 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.190 0.810 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.170 0.830 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.004 0.996 46 H 0.375 0.625 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 4.077 31.524 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.028 4.028 5 N -0.342 5.342 6 C 0.357 3.643 7 O -0.469 6.469 8 C -0.140 4.140 9 C -0.089 4.089 10 C -0.121 4.121 11 C 0.002 3.998 12 N -0.223 5.223 13 C -0.033 4.033 14 C -0.190 4.190 15 C -0.071 4.071 16 C -0.126 4.126 17 C -0.061 4.061 18 C -0.007 4.007 19 C -0.111 4.111 20 H 0.113 0.887 21 C 0.037 3.963 22 N -0.387 5.387 23 C -0.380 4.380 24 H 0.091 0.909 25 C -0.268 4.268 26 N -0.618 5.618 27 Si 0.802 3.198 28 H -0.208 1.208 29 H -0.220 1.220 30 H -0.199 1.199 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.207 0.793 39 H 0.197 0.803 40 H 0.195 0.805 41 H 0.187 0.813 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.022 0.978 46 H 0.207 0.793 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.859 4.409 31.434 33.238 hybrid contribution 0.559 -0.502 -1.948 2.088 sum -9.300 3.906 29.486 31.164 Atomic orbital electron populations 1.21716 0.91181 1.03320 1.02938 1.22291 0.98016 0.98819 0.91965 0.90366 1.23333 0.80844 1.00319 0.98317 1.48788 1.09406 1.64679 1.11279 1.18420 0.81778 0.77921 0.86211 1.90796 1.32991 1.49062 1.74003 1.19703 0.96962 1.04598 0.92752 1.20806 0.97094 0.95494 0.95541 1.20775 0.98293 1.00657 0.92382 1.19183 0.93733 0.95478 0.91397 1.68095 1.30208 1.19740 1.04219 1.23748 0.87824 0.91578 1.00188 1.22356 1.00583 0.98940 0.97119 1.21997 0.96969 0.94850 0.93303 1.18965 0.96393 1.01939 0.95318 1.21936 0.96800 0.95384 0.91993 1.21985 0.98858 0.99155 0.80726 1.22276 0.95976 0.97504 0.95306 0.88658 1.20826 0.95698 0.93383 0.86428 1.42563 1.78083 1.05588 1.12481 1.19572 1.34388 0.91621 0.92443 0.90907 1.25587 1.03266 0.96266 1.01664 1.69807 1.55285 1.05502 1.31244 0.85211 0.78323 0.77138 0.79088 1.20849 1.21987 1.19911 0.91055 0.89859 0.92838 0.87183 0.87337 0.85506 0.83494 0.79332 0.80319 0.80452 0.81298 0.91479 0.94025 0.95095 0.97823 0.79342 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.16 71.98 0.66 -1.24 16 2 C -0.09 -1.84 3.21 -9.58 -0.03 -1.87 16 3 H 0.08 1.73 7.87 -2.39 -0.02 1.71 16 4 C 0.09 1.58 4.74 86.73 0.41 1.99 16 5 N -0.61 -17.30 3.29 -812.86 -2.67 -19.97 16 6 C 0.57 18.50 7.57 86.76 0.66 19.16 16 7 O -0.59 -25.34 17.15 -3.91 -0.07 -25.41 16 8 C -0.14 -3.43 5.60 -20.10 -0.11 -3.54 16 9 C -0.07 -1.72 9.49 22.27 0.21 -1.51 16 10 C -0.10 -2.25 9.95 22.30 0.22 -2.03 16 11 C 0.12 2.52 6.61 40.36 0.27 2.79 16 12 N -0.51 -9.65 10.33 -188.45 -1.95 -11.59 16 13 C 0.14 1.45 11.14 85.06 0.95 2.40 16 14 C -0.17 -1.03 10.03 22.14 0.22 -0.81 16 15 C -0.05 -0.37 9.89 22.53 0.22 -0.15 16 16 C -0.12 -1.98 5.74 -21.29 -0.12 -2.11 16 17 C -0.04 -0.72 7.50 22.82 0.17 -0.55 16 18 C 0.12 3.97 6.35 86.53 0.55 4.52 16 19 C -0.09 -2.74 2.62 -9.91 -0.03 -2.77 16 20 H 0.10 2.77 7.85 -2.39 -0.02 2.75 16 21 C 0.16 6.57 5.33 86.38 0.46 7.03 16 22 N -0.74 -38.81 5.38 -343.44 -1.85 -40.65 16 23 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 24 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 26 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 27 Si 0.97 47.54 29.55 68.60 2.03 49.57 16 28 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 29 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 30 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 31 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.24 7.92 -2.39 -0.02 1.22 16 35 H 0.11 1.39 5.58 -2.39 -0.01 1.37 16 36 H 0.13 3.37 7.97 -2.91 -0.02 3.34 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.18 -0.30 8.06 -2.91 -0.02 -0.33 16 40 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 41 H 0.17 1.83 5.68 -2.91 -0.02 1.81 16 42 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.04 1.85 7.56 -2.39 -0.02 1.83 16 44 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.37 20.63 7.56 -92.71 -0.70 19.93 16 47 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -83.35 385.68 2.08 -81.27 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.29 Total: 23.50 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.02 Total: 3.81 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -6.19 Total: -132.73 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.07 Total: -25.41 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -83.35 2.08 -81.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.641 kcal (2) G-P(sol) polarization free energy of solvation -83.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds