Wall clock time and date at job start Tue Mar 31 2020 22:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63965 * 2 1 4 4 C 1.54320 * 110.72243 * 123.14655 * 2 1 3 5 5 N 1.47019 * 107.27273 * 96.16890 * 4 2 1 6 6 C 1.34780 * 125.64676 * 178.97761 * 5 4 2 7 7 O 1.21560 * 119.99870 * 174.61756 * 6 5 4 8 8 C 1.47769 * 119.99973 * 354.62207 * 6 5 4 9 9 C 1.40629 * 119.80261 * 187.79573 * 8 6 5 10 10 C 1.35703 * 120.91834 * 179.77198 * 9 8 6 11 11 C 1.40754 * 120.11563 * 0.47616 * 10 9 8 12 12 N 1.33647 * 120.83375 * 179.78538 * 11 10 9 13 13 C 1.31113 * 121.39487 * 180.02562 * 12 11 10 14 14 C 1.39320 * 121.77022 * 0.02562 * 13 12 11 15 15 C 1.36577 * 119.90201 * 359.97438 * 14 13 12 16 16 C 1.40892 * 118.16150 * 0.02562 * 15 14 13 17 17 C 1.38544 * 119.80458 * 8.07067 * 8 6 5 18 18 C 1.47422 * 108.70216 * 358.93891 * 5 4 2 19 19 C 1.54900 * 104.83385 * 24.13299 * 18 5 4 20 20 H 1.08998 * 111.01143 * 81.06317 * 19 18 5 21 21 C 1.53001 * 111.00797 * 204.91674 * 19 18 5 22 22 N 1.46498 * 109.46785 * 287.19553 * 21 19 18 23 23 C 1.36940 * 119.99867 * 179.97438 * 22 21 19 24 24 H 1.07996 * 120.00454 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99808 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00000 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99893 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47027 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47145 * 119.99689 * 27 25 23 30 30 H 1.48494 * 109.46877 * 239.99989 * 27 25 23 31 31 H 1.09005 * 109.46529 * 298.30996 * 1 2 3 32 32 H 1.09001 * 109.47015 * 58.30856 * 1 2 3 33 33 H 1.08997 * 109.47284 * 178.31246 * 1 2 3 34 34 H 1.09001 * 109.88261 * 215.59106 * 4 2 1 35 35 H 1.09008 * 109.87846 * 336.74479 * 4 2 1 36 36 H 1.07998 * 119.53710 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.93886 * 180.26556 * 10 9 8 38 38 H 1.08001 * 119.11390 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.04682 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.91748 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.30154 * 359.95687 * 17 8 6 42 42 H 1.08997 * 110.36341 * 142.97116 * 18 5 4 43 43 H 1.09000 * 110.37007 * 265.28951 * 18 5 4 44 44 H 1.09010 * 109.46919 * 47.19035 * 21 19 18 45 45 H 1.08992 * 109.47793 * 167.19031 * 21 19 18 46 46 H 0.96996 * 120.00464 * 0.02562 * 22 21 19 47 47 H 0.97000 * 120.00018 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 2.3716 -2.1519 0.7425 6 6 2.8850 -3.1453 1.4949 7 8 2.9983 -4.2630 1.0306 8 6 3.3102 -2.8757 2.8842 9 6 3.9942 -3.8668 3.6106 10 6 4.3991 -3.6418 4.8861 11 6 4.1283 -2.4073 5.5057 12 7 4.5166 -2.1720 6.7627 13 6 4.2697 -1.0264 7.3507 14 6 3.5919 0.0016 6.6990 15 6 3.1665 -0.1716 5.4127 16 6 3.4336 -1.4040 4.7843 17 6 3.0276 -1.6502 3.4653 18 6 2.0125 -2.2520 -0.6838 19 6 2.0789 -0.7975 -1.2125 20 1 3.1060 -0.5097 -1.4368 21 6 1.1814 -0.6180 -2.4386 22 7 1.7912 -1.2846 -3.5918 23 6 1.1635 -1.2583 -4.8086 24 1 0.2193 -0.7458 -4.9182 25 6 1.7411 -1.8904 -5.9013 26 7 2.8922 -2.5146 -5.7679 27 14 0.8852 -1.8539 -7.5614 28 1 -0.3847 -1.0929 -7.4469 29 1 1.7680 -1.1976 -8.5590 30 1 0.5919 -3.2427 -7.9976 31 1 -0.3632 0.4874 0.9048 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.9869 -0.3180 1.5780 35 1 1.3263 -0.8221 1.9991 36 1 4.2030 -4.8189 3.1457 37 1 4.9270 -4.4126 5.4279 38 1 4.6008 -0.8756 8.3676 39 1 3.4031 0.9340 7.2101 40 1 2.6399 0.6144 4.8918 41 1 2.4989 -0.8915 2.9073 42 1 2.7292 -2.8808 -1.2121 43 1 1.0039 -2.6501 -0.7941 44 1 0.2035 -1.0570 -2.2403 45 1 1.0661 0.4445 -2.6521 46 1 2.6391 -1.7453 -3.4934 47 1 3.2959 -2.9560 -6.5315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699966188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:59 Heat of formation + Delta-G solvation = 57.268617 kcal Electronic energy + Delta-G solvation = -28596.102724 eV Core-core repulsion = 24744.818307 eV Total energy + Delta-G solvation = -3851.284418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.36458 -40.26830 -38.26040 -36.88097 -34.87986 -33.93157 -32.95043 -31.30706 -31.02549 -30.64069 -28.84788 -27.06664 -25.81389 -24.90163 -24.03568 -23.17547 -22.64291 -21.67305 -20.26962 -19.32771 -18.67301 -17.64884 -17.19341 -16.87644 -16.48357 -16.04887 -15.50622 -15.04275 -14.95885 -14.63556 -14.50715 -14.33685 -14.00437 -13.73073 -13.58207 -13.41224 -13.32209 -13.01203 -12.77805 -12.65544 -12.47646 -12.08094 -11.89857 -11.85769 -11.74467 -11.49436 -11.01649 -10.97488 -10.86898 -10.54541 -10.47681 -10.38016 -10.05366 -9.96067 -9.77526 -9.69367 -9.16875 -8.89138 -8.67673 -8.63102 -6.93915 -5.76948 -3.06421 -0.13278 0.34535 1.54525 2.17896 2.86369 3.12743 3.43248 3.48421 3.51085 3.77724 3.87813 4.11748 4.21837 4.31746 4.34383 4.46929 4.55680 4.65134 4.70684 4.75350 4.81144 4.93792 5.06937 5.11921 5.23407 5.34359 5.37207 5.44396 5.48050 5.55287 5.58394 5.67617 5.71503 5.76312 5.87958 5.88954 5.98008 5.98975 6.10445 6.11135 6.14372 6.26212 6.33041 6.39640 6.44955 6.65156 6.78513 7.44484 7.50630 7.69301 8.08790 8.41207 9.52553 10.09392 10.43301 11.45741 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.002259 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.899927 B =12390.693006 C =13261.621396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.091 3.909 5 N -0.609 5.609 6 C 0.567 3.433 7 O -0.529 6.529 8 C -0.118 4.118 9 C -0.051 4.051 10 C -0.102 4.102 11 C 0.141 3.859 12 N -0.478 5.478 13 C 0.137 3.863 14 C -0.182 4.182 15 C -0.048 4.048 16 C -0.112 4.112 17 C -0.095 4.095 18 C 0.117 3.883 19 C -0.102 4.102 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.171 0.829 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 7.842 27.808 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.031 4.031 5 N -0.342 5.342 6 C 0.356 3.644 7 O -0.407 6.407 8 C -0.121 4.121 9 C -0.072 4.072 10 C -0.121 4.121 11 C 0.019 3.981 12 N -0.186 5.186 13 C -0.035 4.035 14 C -0.201 4.201 15 C -0.074 4.074 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.004 4.004 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.187 0.813 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.455 6.452 27.820 28.562 hybrid contribution -0.511 0.570 -1.254 1.470 sum -0.056 7.022 26.565 27.478 Atomic orbital electron populations 1.21861 0.93871 1.02569 1.02007 1.22277 0.96812 0.99241 0.93544 0.89009 1.22665 0.99730 0.83133 0.97599 1.48416 1.62444 1.11041 1.12330 1.17860 0.77769 0.83842 0.84895 1.90818 1.55344 1.21423 1.73103 1.19988 1.02273 0.95262 0.94556 1.20950 0.93933 0.99058 0.93220 1.20713 1.00961 0.95748 0.94633 1.19060 0.94779 0.94110 0.90108 1.68073 1.19128 1.22095 1.09326 1.23042 0.92611 0.88102 0.99792 1.21903 1.01027 1.01217 0.95998 1.21556 0.95606 0.95508 0.94726 1.18824 1.01545 0.95553 0.95510 1.23047 0.96989 0.97523 0.93799 1.22390 1.01629 0.97984 0.78412 1.22635 1.01306 0.93331 0.94844 0.89512 1.20631 0.94127 0.96000 0.85445 1.42392 1.25661 1.64435 1.05304 1.19237 1.03036 1.28346 0.86570 0.91115 1.24761 0.97310 1.00715 0.98176 1.69669 1.18101 1.39971 1.30202 0.86125 0.78519 0.77219 0.84360 1.20564 1.21884 1.21852 0.92850 0.91223 0.92215 0.90498 0.90473 0.83829 0.84095 0.82287 0.84284 0.84056 0.81256 0.89655 0.90807 0.95660 0.95819 0.78257 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.91 37.16 0.29 -1.15 16 2 C -0.10 -1.03 3.47 -88.78 -0.31 -1.34 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.09 0.87 4.45 -3.07 -0.01 0.86 16 5 N -0.61 -8.31 3.33 -177.20 -0.59 -8.90 16 6 C 0.57 8.61 7.80 -12.36 -0.10 8.51 16 7 O -0.53 -10.08 16.64 5.31 0.09 -9.99 16 8 C -0.12 -1.45 5.87 -104.99 -0.62 -2.06 16 9 C -0.05 -0.59 9.49 -39.59 -0.38 -0.97 16 10 C -0.10 -1.09 9.95 -39.54 -0.39 -1.48 16 11 C 0.14 1.55 6.61 -84.78 -0.56 0.99 16 12 N -0.48 -4.99 10.33 -10.92 -0.11 -5.10 16 13 C 0.14 0.99 11.15 -17.46 -0.19 0.80 16 14 C -0.18 -1.06 10.03 -39.78 -0.40 -1.46 16 15 C -0.05 -0.33 9.89 -39.18 -0.39 -0.71 16 16 C -0.11 -1.08 5.74 -106.82 -0.61 -1.69 16 17 C -0.10 -0.93 8.35 -38.74 -0.32 -1.25 16 18 C 0.12 1.87 5.98 -2.54 -0.02 1.86 16 19 C -0.10 -1.50 2.91 -88.47 -0.26 -1.75 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.17 3.07 4.54 -4.04 -0.02 3.05 16 22 N -0.73 -18.05 5.55 -59.91 -0.33 -18.38 16 23 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 27 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.74 7.12 -51.93 -0.37 0.37 16 33 H 0.06 0.67 7.34 -51.93 -0.38 0.28 16 34 H 0.08 0.62 6.66 -51.93 -0.35 0.27 16 35 H 0.08 0.59 6.51 -51.92 -0.34 0.25 16 36 H 0.14 1.64 7.63 -52.49 -0.40 1.24 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 41 H 0.17 1.28 2.72 -59.63 -0.16 1.12 16 42 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 43 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 44 H 0.03 0.47 6.94 -51.92 -0.36 0.11 16 45 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 46 H 0.38 10.07 7.67 -40.82 -0.31 9.75 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.89 378.40 -10.47 -45.36 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.40 Total: 6.56 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -4.52 Total: -5.07 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.31 Total: -59.92 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.89 -10.47 -45.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.627 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds