Wall clock time and date at job start Tue Mar 31 2020 22:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63965 * 2 1 4 4 C 1.54320 * 110.72243 * 123.14655 * 2 1 3 5 5 N 1.47019 * 107.27273 * 96.16890 * 4 2 1 6 6 C 1.34780 * 125.64676 * 178.97761 * 5 4 2 7 7 O 1.21560 * 119.99870 * 174.61756 * 6 5 4 8 8 C 1.47769 * 119.99973 * 354.62207 * 6 5 4 9 9 C 1.40629 * 119.80261 * 187.79573 * 8 6 5 10 10 C 1.35703 * 120.91834 * 179.77198 * 9 8 6 11 11 C 1.40754 * 120.11563 * 0.47616 * 10 9 8 12 12 N 1.33647 * 120.83375 * 179.78538 * 11 10 9 13 13 C 1.31113 * 121.39487 * 180.02562 * 12 11 10 14 14 C 1.39320 * 121.77022 * 0.02562 * 13 12 11 15 15 C 1.36577 * 119.90201 * 359.97438 * 14 13 12 16 16 C 1.40892 * 118.16150 * 0.02562 * 15 14 13 17 17 C 1.38544 * 119.80458 * 8.07067 * 8 6 5 18 18 C 1.47422 * 108.70216 * 358.93891 * 5 4 2 19 19 C 1.54900 * 104.83385 * 24.13299 * 18 5 4 20 20 H 1.08998 * 111.01143 * 81.06317 * 19 18 5 21 21 C 1.53001 * 111.00797 * 204.91674 * 19 18 5 22 22 N 1.46498 * 109.46785 * 287.19553 * 21 19 18 23 23 C 1.36940 * 119.99867 * 179.97438 * 22 21 19 24 24 H 1.07996 * 120.00454 * 0.02562 * 23 22 21 25 25 C 1.38817 * 119.99808 * 180.02562 * 23 22 21 26 26 N 1.31619 * 120.00000 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99893 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47027 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47145 * 119.99689 * 27 25 23 30 30 H 1.48494 * 109.46877 * 239.99989 * 27 25 23 31 31 H 1.09005 * 109.46529 * 298.30996 * 1 2 3 32 32 H 1.09001 * 109.47015 * 58.30856 * 1 2 3 33 33 H 1.08997 * 109.47284 * 178.31246 * 1 2 3 34 34 H 1.09001 * 109.88261 * 215.59106 * 4 2 1 35 35 H 1.09008 * 109.87846 * 336.74479 * 4 2 1 36 36 H 1.07998 * 119.53710 * 359.97438 * 9 8 6 37 37 H 1.08001 * 119.93886 * 180.26556 * 10 9 8 38 38 H 1.08001 * 119.11390 * 180.02562 * 13 12 11 39 39 H 1.07998 * 120.04682 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.91748 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.30154 * 359.95687 * 17 8 6 42 42 H 1.08997 * 110.36341 * 142.97116 * 18 5 4 43 43 H 1.09000 * 110.37007 * 265.28951 * 18 5 4 44 44 H 1.09010 * 109.46919 * 47.19035 * 21 19 18 45 45 H 1.08992 * 109.47793 * 167.19031 * 21 19 18 46 46 H 0.96996 * 120.00464 * 0.02562 * 22 21 19 47 47 H 0.97000 * 120.00018 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 1.2085 5 7 2.3716 -2.1519 0.7425 6 6 2.8850 -3.1453 1.4949 7 8 2.9983 -4.2630 1.0306 8 6 3.3102 -2.8757 2.8842 9 6 3.9942 -3.8668 3.6106 10 6 4.3991 -3.6418 4.8861 11 6 4.1283 -2.4073 5.5057 12 7 4.5166 -2.1720 6.7627 13 6 4.2697 -1.0264 7.3507 14 6 3.5919 0.0016 6.6990 15 6 3.1665 -0.1716 5.4127 16 6 3.4336 -1.4040 4.7843 17 6 3.0276 -1.6502 3.4653 18 6 2.0125 -2.2520 -0.6838 19 6 2.0789 -0.7975 -1.2125 20 1 3.1060 -0.5097 -1.4368 21 6 1.1814 -0.6180 -2.4386 22 7 1.7912 -1.2846 -3.5918 23 6 1.1635 -1.2583 -4.8086 24 1 0.2193 -0.7458 -4.9182 25 6 1.7411 -1.8904 -5.9013 26 7 2.8922 -2.5146 -5.7679 27 14 0.8852 -1.8539 -7.5614 28 1 -0.3847 -1.0929 -7.4469 29 1 1.7680 -1.1976 -8.5590 30 1 0.5919 -3.2427 -7.9976 31 1 -0.3632 0.4874 0.9048 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.9869 -0.3180 1.5780 35 1 1.3263 -0.8221 1.9991 36 1 4.2030 -4.8189 3.1457 37 1 4.9270 -4.4126 5.4279 38 1 4.6008 -0.8756 8.3676 39 1 3.4031 0.9340 7.2101 40 1 2.6399 0.6144 4.8918 41 1 2.4989 -0.8915 2.9073 42 1 2.7292 -2.8808 -1.2121 43 1 1.0039 -2.6501 -0.7941 44 1 0.2035 -1.0570 -2.2403 45 1 1.0661 0.4445 -2.6521 46 1 2.6391 -1.7453 -3.4934 47 1 3.2959 -2.9560 -6.5315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699966188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:58 Heat of formation + Delta-G solvation = 34.183680 kcal Electronic energy + Delta-G solvation = -28597.103762 eV Core-core repulsion = 24744.818307 eV Total energy + Delta-G solvation = -3852.285456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.16680 -41.19851 -39.37199 -37.72795 -36.54007 -34.78374 -34.17822 -32.85729 -31.88513 -31.47464 -30.16385 -27.95754 -27.22871 -25.87220 -25.02658 -24.40533 -23.63616 -22.77099 -21.23185 -20.53906 -19.53166 -19.03220 -18.34855 -17.82264 -17.42115 -17.09389 -16.65642 -16.40459 -15.95765 -15.70083 -15.39562 -15.31511 -15.15774 -14.94333 -14.82945 -14.46563 -14.12531 -14.09596 -14.03276 -13.72684 -13.54167 -13.15908 -13.00075 -12.81811 -12.75196 -12.71476 -12.67046 -12.41637 -12.08035 -11.88383 -11.61241 -11.60169 -11.51714 -11.35252 -11.13692 -10.92468 -10.42453 -9.96254 -9.71393 -9.36732 -8.99109 -7.94945 -5.23845 -0.81875 -0.34264 0.87958 1.34722 1.46572 1.47937 1.57775 1.77699 2.21354 2.55773 3.07576 3.17364 3.32965 3.38853 3.40026 3.48965 3.69011 3.75926 3.83139 3.98727 4.01759 4.05635 4.12080 4.20033 4.30667 4.32790 4.41871 4.51288 4.55882 4.62778 4.71807 4.77916 4.81684 4.84027 4.88817 4.93176 5.01898 5.04571 5.09937 5.19605 5.25120 5.26171 5.28532 5.34876 5.47881 5.51007 5.54140 5.77532 6.27167 6.37041 6.91055 6.95129 7.32980 8.10196 8.30762 9.29012 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.002259 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.899927 B =12390.693006 C =13261.621396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.125 0.875 4 C 0.084 3.916 5 N -0.607 5.607 6 C 0.561 3.439 7 O -0.588 6.588 8 C -0.145 4.145 9 C -0.066 4.066 10 C -0.108 4.108 11 C 0.123 3.877 12 N -0.516 5.516 13 C 0.138 3.862 14 C -0.173 4.173 15 C -0.044 4.044 16 C -0.128 4.128 17 C -0.069 4.069 18 C 0.122 3.878 19 C -0.095 4.095 20 H 0.078 0.922 21 C 0.166 3.834 22 N -0.750 5.750 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.973 3.027 28 H -0.262 1.262 29 H -0.293 1.293 30 H -0.298 1.298 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.190 0.810 39 H 0.180 0.820 40 H 0.181 0.819 41 H 0.197 0.803 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.037 0.963 46 H 0.370 0.630 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 12.339 30.786 33.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.143 0.857 4 C -0.037 4.037 5 N -0.338 5.338 6 C 0.353 3.647 7 O -0.469 6.469 8 C -0.148 4.148 9 C -0.086 4.086 10 C -0.127 4.127 11 C 0.002 3.998 12 N -0.225 5.225 13 C -0.033 4.033 14 C -0.192 4.192 15 C -0.070 4.070 16 C -0.130 4.130 17 C -0.087 4.087 18 C -0.001 4.001 19 C -0.114 4.114 20 H 0.096 0.904 21 C 0.040 3.960 22 N -0.392 5.392 23 C -0.371 4.371 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.803 3.197 28 H -0.186 1.186 29 H -0.221 1.221 30 H -0.225 1.225 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.206 0.794 39 H 0.197 0.803 40 H 0.198 0.802 41 H 0.213 0.787 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.054 0.946 46 H 0.202 0.798 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.164 11.024 30.844 32.775 hybrid contribution -0.039 -0.706 -1.945 2.069 sum -1.203 10.318 28.899 30.709 Atomic orbital electron populations 1.21888 0.93253 1.01707 1.03529 1.22312 0.97193 1.00083 0.90730 0.85734 1.23068 1.01982 0.80517 0.98108 1.48437 1.61711 1.12648 1.11052 1.18420 0.77013 0.83263 0.86017 1.90772 1.57834 1.23824 1.74503 1.19748 1.04937 0.97095 0.93050 1.20859 0.95102 0.98827 0.93843 1.20772 1.01122 0.96573 0.94216 1.19246 0.95301 0.94414 0.90845 1.68092 1.20887 1.24143 1.09353 1.23754 0.91200 0.87405 1.00970 1.22364 0.99120 1.02044 0.95678 1.22032 0.94977 0.94827 0.95150 1.19058 1.01813 0.96739 0.95401 1.23261 0.95202 0.96395 0.93829 1.22111 0.99552 0.98343 0.80104 1.22470 1.00384 0.93283 0.95297 0.90391 1.20803 0.94546 0.95696 0.84960 1.42679 1.25314 1.64800 1.06396 1.19692 1.02982 1.26793 0.87630 0.90161 1.25619 0.98301 1.01414 1.01992 1.69841 1.19961 1.41735 1.30829 0.85066 0.78049 0.76802 0.79818 1.18572 1.22069 1.22510 0.89225 0.92005 0.94148 0.87721 0.87192 0.85337 0.83637 0.79366 0.80280 0.80174 0.78653 0.94009 0.92085 0.95398 0.94560 0.79823 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.91 71.98 0.57 -1.80 16 2 C -0.08 -1.44 3.47 -9.60 -0.03 -1.47 16 3 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.08 1.30 4.45 86.73 0.39 1.69 16 5 N -0.61 -16.64 3.33 -832.82 -2.77 -19.41 16 6 C 0.56 18.01 7.80 86.76 0.68 18.69 16 7 O -0.59 -24.69 16.64 -3.90 -0.06 -24.76 16 8 C -0.15 -3.64 5.87 -20.10 -0.12 -3.75 16 9 C -0.07 -1.66 9.49 22.27 0.21 -1.45 16 10 C -0.11 -2.42 9.95 22.30 0.22 -2.20 16 11 C 0.12 2.57 6.61 40.35 0.27 2.84 16 12 N -0.52 -9.89 10.33 -188.45 -1.95 -11.84 16 13 C 0.14 1.50 11.15 85.06 0.95 2.44 16 14 C -0.17 -1.07 10.03 22.14 0.22 -0.85 16 15 C -0.04 -0.36 9.89 22.53 0.22 -0.14 16 16 C -0.13 -2.08 5.74 -21.29 -0.12 -2.20 16 17 C -0.07 -1.16 8.35 22.82 0.19 -0.97 16 18 C 0.12 4.10 5.98 86.85 0.52 4.62 16 19 C -0.09 -2.75 2.91 -9.40 -0.03 -2.78 16 20 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 21 C 0.17 6.11 4.54 86.38 0.39 6.50 16 22 N -0.75 -37.82 5.55 -343.45 -1.91 -39.72 16 23 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 24 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 26 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 27 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 28 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 31 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.12 7.12 -2.39 -0.02 1.10 16 33 H 0.04 0.82 7.34 -2.39 -0.02 0.80 16 34 H 0.11 1.15 6.66 -2.39 -0.02 1.13 16 35 H 0.11 1.09 6.51 -2.38 -0.02 1.08 16 36 H 0.13 3.46 7.63 -2.91 -0.02 3.44 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 40 H 0.18 0.04 8.06 -2.91 -0.02 0.02 16 41 H 0.20 2.01 2.72 -9.62 -0.03 1.99 16 42 H 0.04 1.75 8.09 -2.39 -0.02 1.73 16 43 H 0.06 2.17 7.48 -2.39 -0.02 2.16 16 44 H 0.03 1.03 6.94 -2.38 -0.02 1.02 16 45 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 46 H 0.37 20.43 7.67 -92.71 -0.71 19.72 16 47 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -83.19 378.40 1.73 -81.46 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.28 Total: 24.05 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.83 Total: 2.41 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -6.34 Total: -131.92 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.76 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -83.19 1.73 -81.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.646 kcal (2) G-P(sol) polarization free energy of solvation -83.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds