Wall clock time and date at job start Tue Mar 31 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47013 * 119.99808 * 2 1 3 5 5 C 1.52999 * 109.47211 * 185.00044 * 4 2 1 6 6 N 1.46501 * 109.47178 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99659 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.47256 * 119.99745 * 179.97438 * 7 6 5 10 10 C 1.36240 * 126.16581 * 179.97438 * 9 7 6 11 11 N 1.36343 * 106.89089 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.20201 * 180.02562 * 11 10 9 13 13 C 1.36173 * 107.59940 * 0.26055 * 11 10 9 14 14 O 1.35453 * 125.55100 * 179.73549 * 13 11 10 15 15 N 1.30710 * 108.89298 * 359.56450 * 13 11 10 16 16 N 1.46898 * 109.47492 * 239.99825 * 2 1 3 17 17 C 1.46900 * 111.00283 * 84.99827 * 16 2 1 18 18 C 1.50698 * 109.47366 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99859 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99700 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99636 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00209 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99740 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47221 * 89.99807 * 25 23 21 27 27 H 1.48500 * 109.47183 * 209.99802 * 25 23 21 28 28 H 1.48495 * 109.47364 * 329.99980 * 25 23 21 29 29 H 1.09001 * 109.47514 * 300.00161 * 1 2 3 30 30 H 1.09006 * 109.47462 * 60.00426 * 1 2 3 31 31 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47272 * 65.00469 * 4 2 1 33 33 H 1.09000 * 109.47393 * 304.99919 * 4 2 1 34 34 H 1.09006 * 109.47082 * 59.99798 * 5 4 2 35 35 H 1.09006 * 109.47221 * 300.00379 * 5 4 2 36 36 H 0.96998 * 119.99579 * 0.02562 * 6 5 4 37 37 H 1.08003 * 126.55682 * 0.02562 * 10 9 7 38 38 H 1.09002 * 109.47391 * 89.99678 * 12 11 10 39 39 H 1.09001 * 109.46813 * 329.99735 * 12 11 10 40 40 H 1.09004 * 109.47041 * 209.99862 * 12 11 10 41 41 H 0.96699 * 113.99663 * 90.00700 * 14 13 11 42 42 H 1.00907 * 111.00139 * 321.04631 * 16 2 1 43 43 H 1.09006 * 109.47070 * 300.00460 * 17 16 2 44 44 H 1.09001 * 109.46898 * 59.99873 * 17 16 2 45 45 H 0.97001 * 120.00490 * 0.02562 * 20 18 17 46 46 H 0.97004 * 119.99695 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3407 2.7747 8 8 6.1607 -0.7992 2.0214 9 6 5.8649 -2.0348 3.9771 10 6 7.1660 -2.1491 4.3646 11 7 7.1722 -2.8636 5.5258 12 6 8.3543 -3.2322 6.3087 13 6 5.8808 -3.1772 5.8232 14 8 5.4712 -3.8883 6.9008 15 7 5.1008 -2.6771 4.9013 16 7 2.0197 -0.6925 -1.1994 17 6 2.0825 0.2225 -2.3469 18 6 2.5874 -0.5219 -3.5560 19 8 2.8670 -1.6991 -3.4703 20 7 2.7274 0.1201 -4.7327 21 6 3.1872 -0.5570 -5.8325 22 1 3.4370 -1.6050 -5.7560 23 6 3.3320 0.1050 -7.0456 24 7 3.7723 -0.5442 -8.0998 25 14 2.9008 1.9177 -7.1776 26 1 4.1016 2.7358 -6.8713 27 1 2.4364 2.2169 -8.5561 28 1 1.8214 2.2415 -6.2105 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 3.8531 0.4370 1.3574 35 1 3.9994 -1.0728 0.4260 36 1 3.4258 -1.7364 3.1102 37 1 8.0277 -1.7494 3.8508 38 1 8.5637 -2.4514 7.0400 39 1 9.2100 -3.3455 5.6431 40 1 8.1688 -4.1738 6.8255 41 1 5.2777 -3.3472 7.6786 42 1 1.4496 -1.4980 -1.4100 43 1 1.0870 0.6162 -2.5526 44 1 2.7588 1.0461 -2.1182 45 1 2.5034 1.0614 -4.8013 46 1 3.8731 -0.0821 -8.9468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700326591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:16 Heat of formation + Delta-G solvation = -42.765150 kcal Electronic energy + Delta-G solvation = -28166.657710 eV Core-core repulsion = 23900.186239 eV Total energy + Delta-G solvation = -4266.471471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56790 -39.39074 -38.55558 -37.75507 -37.08453 -34.80986 -34.54017 -33.86889 -31.70566 -31.35598 -29.66227 -28.92578 -27.55420 -26.42717 -24.35538 -23.58509 -22.37896 -21.79400 -20.91755 -20.14622 -19.31133 -18.97625 -18.28812 -17.80154 -16.72232 -16.14171 -16.02833 -15.80207 -15.58440 -15.24980 -14.94514 -14.77402 -14.72816 -14.65036 -14.01019 -13.85759 -13.48699 -13.37549 -13.25642 -13.08395 -12.89833 -12.72546 -12.41475 -12.30042 -12.12694 -11.83069 -11.59633 -11.31029 -11.18956 -11.08838 -10.84306 -10.73181 -10.54472 -10.25556 -10.07469 -9.91672 -9.50876 -9.06992 -8.80186 -8.51534 -8.12385 -8.03482 -6.25125 -3.76121 1.18115 1.73031 1.96603 3.03014 3.07021 3.11990 3.19397 3.36377 3.49448 3.81860 4.13982 4.14599 4.18289 4.22577 4.49112 4.74784 4.76670 4.80050 4.91292 5.00889 5.11026 5.20354 5.28818 5.35575 5.41988 5.45413 5.60260 5.66665 5.76927 5.79339 5.84498 5.95505 6.01647 6.05866 6.08845 6.18166 6.34176 6.51982 7.02720 7.18848 7.20259 7.62105 7.64528 7.67062 8.21379 8.26105 8.66462 9.01631 9.49129 9.90175 10.88167 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.001843 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.353491 B =15187.888512 C =16222.797882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.122 3.878 6 N -0.715 5.715 7 C 0.600 3.400 8 O -0.538 6.538 9 C -0.044 4.044 10 C 0.044 3.956 11 N -0.464 5.464 12 C 0.067 3.933 13 C 0.376 3.624 14 O -0.439 6.439 15 N -0.455 5.455 16 N -0.662 5.662 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.405 0.595 37 H 0.197 0.803 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.402 0.598 42 H 0.352 0.648 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 1.198 33.669 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.001 4.001 6 N -0.365 5.365 7 C 0.385 3.615 8 O -0.415 6.415 9 C -0.173 4.173 10 C -0.093 4.093 11 N -0.159 5.159 12 C -0.075 4.075 13 C 0.075 3.925 14 O -0.239 6.239 15 N -0.186 5.186 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.240 0.760 37 H 0.214 0.786 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.258 0.742 42 H 0.172 0.828 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.808 0.216 32.870 32.991 hybrid contribution -0.746 1.671 0.304 1.855 sum 2.062 1.887 33.175 33.292 Atomic orbital electron populations 1.22516 0.97174 1.02378 1.02127 1.21507 0.92404 0.98127 0.90528 0.90206 1.21747 0.94618 1.01859 0.97189 1.21421 0.93863 0.97133 0.87634 1.45829 1.07076 1.56361 1.27248 1.16773 0.82619 0.79189 0.82881 1.90851 1.55659 1.46396 1.48567 1.20499 0.90553 1.07385 0.98864 1.22710 1.00148 0.98018 0.88454 1.45832 1.08379 1.40975 1.20710 1.22166 0.86125 1.02629 0.96565 1.20264 0.79681 0.99659 0.92890 1.84912 1.85679 1.32576 1.20777 1.70846 1.31265 1.12892 1.03567 1.60195 1.57771 1.09057 1.02458 1.21735 0.99869 0.95902 0.90987 1.19744 0.84582 0.88264 0.83760 1.90569 1.53658 1.16021 1.84245 1.42208 1.60298 1.11112 1.09575 1.19436 1.39957 0.98011 0.85785 0.86306 1.25038 0.97580 0.98376 0.95267 1.69626 1.45375 1.36492 1.00808 0.86662 0.79002 0.85254 0.78400 1.19601 1.20277 1.19562 0.92178 0.92461 0.92206 0.90981 0.91423 0.91902 0.89136 0.76005 0.78609 0.90018 0.88832 0.88841 0.74169 0.82837 0.93803 0.89456 0.79731 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.16 37.15 0.34 -1.42 16 2 C 0.09 0.96 2.59 -67.72 -0.18 0.78 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 4 C -0.12 -1.18 5.00 -26.73 -0.13 -1.32 16 5 C 0.12 1.56 5.56 -4.04 -0.02 1.54 16 6 N -0.71 -8.82 5.55 -61.43 -0.34 -9.16 16 7 C 0.60 8.50 7.81 -12.60 -0.10 8.40 16 8 O -0.54 -9.35 16.88 5.25 0.09 -9.26 16 9 C -0.04 -0.53 6.97 -83.06 -0.58 -1.10 16 10 C 0.04 0.40 11.29 -16.27 -0.18 0.22 16 11 N -0.46 -3.25 3.16 -125.77 -0.40 -3.65 16 12 C 0.07 0.16 11.11 59.85 0.66 0.83 16 13 C 0.38 3.32 9.03 -89.16 -0.81 2.51 16 14 O -0.44 -2.69 13.54 -18.05 -0.24 -2.94 16 15 N -0.46 -5.18 11.03 -11.22 -0.12 -5.30 16 16 N -0.66 -10.11 5.33 -107.99 -0.58 -10.68 16 17 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 18 C 0.45 10.46 7.82 -10.99 -0.09 10.38 16 19 O -0.56 -15.49 15.78 5.55 0.09 -15.40 16 20 N -0.59 -14.46 5.09 -10.96 -0.06 -14.51 16 21 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 22 H 0.12 3.93 7.39 -52.48 -0.39 3.55 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.31 13.96 55.50 0.77 -25.53 16 25 Si 0.88 19.81 27.74 -169.99 -4.71 15.09 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.47 7.75 -51.93 -0.40 1.07 16 36 H 0.41 4.31 8.18 -40.82 -0.33 3.97 16 37 H 0.20 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.09 0.16 8.13 -51.93 -0.42 -0.26 16 41 H 0.40 0.33 9.06 45.56 0.41 0.74 16 42 H 0.35 5.62 8.17 -39.29 -0.32 5.30 16 43 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 44 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 45 H 0.37 7.93 5.76 -40.82 -0.24 7.70 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -39.15 395.29 -6.74 -45.88 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -5.84 Total: 15.82 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -1.36 Total: 13.69 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.72 Total: -68.85 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.07 Total: -27.59 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.15 -6.74 -45.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700326591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.119 kcal (2) G-P(sol) polarization free energy of solvation -39.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds