Wall clock time and date at job start Tue Mar 31 2020 22:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47013 * 119.99808 * 2 1 3 5 5 C 1.52999 * 109.47211 * 185.00044 * 4 2 1 6 6 N 1.46501 * 109.47178 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99659 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.47256 * 119.99745 * 179.97438 * 7 6 5 10 10 C 1.36240 * 126.16581 * 179.97438 * 9 7 6 11 11 N 1.36343 * 106.89089 * 179.97438 * 10 9 7 12 12 C 1.46499 * 126.20201 * 180.02562 * 11 10 9 13 13 C 1.36173 * 107.59940 * 0.26055 * 11 10 9 14 14 O 1.35453 * 125.55100 * 179.73549 * 13 11 10 15 15 N 1.30710 * 108.89298 * 359.56450 * 13 11 10 16 16 N 1.46898 * 109.47492 * 239.99825 * 2 1 3 17 17 C 1.46900 * 111.00283 * 84.99827 * 16 2 1 18 18 C 1.50698 * 109.47366 * 180.02562 * 17 16 2 19 19 O 1.21289 * 119.99859 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99700 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99636 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00209 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99832 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99740 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47221 * 89.99807 * 25 23 21 27 27 H 1.48500 * 109.47183 * 209.99802 * 25 23 21 28 28 H 1.48495 * 109.47364 * 329.99980 * 25 23 21 29 29 H 1.09001 * 109.47514 * 300.00161 * 1 2 3 30 30 H 1.09006 * 109.47462 * 60.00426 * 1 2 3 31 31 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47272 * 65.00469 * 4 2 1 33 33 H 1.09000 * 109.47393 * 304.99919 * 4 2 1 34 34 H 1.09006 * 109.47082 * 59.99798 * 5 4 2 35 35 H 1.09006 * 109.47221 * 300.00379 * 5 4 2 36 36 H 0.96998 * 119.99579 * 0.02562 * 6 5 4 37 37 H 1.08003 * 126.55682 * 0.02562 * 10 9 7 38 38 H 1.09002 * 109.47391 * 89.99678 * 12 11 10 39 39 H 1.09001 * 109.46813 * 329.99735 * 12 11 10 40 40 H 1.09004 * 109.47041 * 209.99862 * 12 11 10 41 41 H 0.96699 * 113.99663 * 90.00700 * 14 13 11 42 42 H 1.00907 * 111.00139 * 321.04631 * 16 2 1 43 43 H 1.09006 * 109.47070 * 300.00460 * 17 16 2 44 44 H 1.09001 * 109.46898 * 59.99873 * 17 16 2 45 45 H 0.97001 * 120.00490 * 0.02562 * 20 18 17 46 46 H 0.97004 * 119.99695 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3407 2.7747 8 8 6.1607 -0.7992 2.0214 9 6 5.8649 -2.0348 3.9771 10 6 7.1660 -2.1491 4.3646 11 7 7.1722 -2.8636 5.5258 12 6 8.3543 -3.2322 6.3087 13 6 5.8808 -3.1772 5.8232 14 8 5.4712 -3.8883 6.9008 15 7 5.1008 -2.6771 4.9013 16 7 2.0197 -0.6925 -1.1994 17 6 2.0825 0.2225 -2.3469 18 6 2.5874 -0.5219 -3.5560 19 8 2.8670 -1.6991 -3.4703 20 7 2.7274 0.1201 -4.7327 21 6 3.1872 -0.5570 -5.8325 22 1 3.4370 -1.6050 -5.7560 23 6 3.3320 0.1050 -7.0456 24 7 3.7723 -0.5442 -8.0998 25 14 2.9008 1.9177 -7.1776 26 1 4.1016 2.7358 -6.8713 27 1 2.4364 2.2169 -8.5561 28 1 1.8214 2.2415 -6.2105 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 3.8531 0.4370 1.3574 35 1 3.9994 -1.0728 0.4260 36 1 3.4258 -1.7364 3.1102 37 1 8.0277 -1.7494 3.8508 38 1 8.5637 -2.4514 7.0400 39 1 9.2100 -3.3455 5.6431 40 1 8.1688 -4.1738 6.8255 41 1 5.2777 -3.3472 7.6786 42 1 1.4496 -1.4980 -1.4100 43 1 1.0870 0.6162 -2.5526 44 1 2.7588 1.0461 -2.1182 45 1 2.5034 1.0614 -4.8013 46 1 3.8731 -0.0821 -8.9468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700326591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:15 Heat of formation + Delta-G solvation = -80.021884 kcal Electronic energy + Delta-G solvation = -28168.273283 eV Core-core repulsion = 23900.186239 eV Total energy + Delta-G solvation = -4268.087044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.22708 -40.48244 -40.26561 -38.37978 -38.18285 -36.08581 -35.74045 -35.14740 -33.75347 -32.60868 -30.47996 -29.70671 -28.05979 -28.01882 -25.65310 -24.88907 -23.26206 -22.40303 -21.87895 -21.31113 -21.02094 -20.24984 -19.55123 -18.58956 -17.71121 -17.38679 -17.00704 -16.87314 -16.72476 -16.50552 -16.39295 -15.88921 -15.53934 -15.41128 -15.29889 -14.99483 -14.79277 -14.52490 -14.40296 -14.25544 -13.87561 -13.57654 -13.55527 -13.48542 -13.12524 -12.94059 -12.84725 -12.64095 -12.40542 -12.22198 -12.14577 -11.96007 -11.70989 -11.51973 -11.50604 -11.09793 -10.84861 -10.41990 -10.23770 -10.09997 -9.57490 -9.21250 -8.40567 -6.01337 0.45185 1.05453 1.30292 1.36744 1.38604 1.44995 1.97715 2.18830 2.23878 2.42468 2.76827 2.81048 3.15820 3.47286 3.60823 3.79916 3.90211 4.06945 4.15383 4.17947 4.31946 4.37427 4.40813 4.45491 4.51080 4.59917 4.62421 4.70059 4.77541 4.85381 4.93716 5.06046 5.19798 5.22604 5.28878 5.35652 5.50910 5.54351 5.62724 5.93224 6.14184 6.40386 6.47515 6.61222 6.61514 6.73207 6.89278 7.24439 7.41066 7.98497 8.77303 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.001843 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.353491 B =15187.888512 C =16222.797882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.091 0.909 4 C -0.105 4.105 5 C 0.128 3.872 6 N -0.706 5.706 7 C 0.595 3.405 8 O -0.582 6.582 9 C -0.080 4.080 10 C 0.056 3.944 11 N -0.455 5.455 12 C 0.059 3.941 13 C 0.380 3.620 14 O -0.441 6.441 15 N -0.485 5.485 16 N -0.683 5.683 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.230 1.230 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.414 0.586 37 H 0.213 0.787 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.426 0.574 42 H 0.344 0.656 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.390 0.610 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 3.911 36.721 36.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.109 0.891 4 C -0.143 4.143 5 C 0.004 3.996 6 N -0.357 5.357 7 C 0.381 3.619 8 O -0.462 6.462 9 C -0.208 4.208 10 C -0.084 4.084 11 N -0.149 5.149 12 C -0.081 4.081 13 C 0.078 3.922 14 O -0.244 6.244 15 N -0.216 5.216 16 N -0.316 5.316 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.183 1.183 27 H -0.199 1.199 28 H -0.153 1.153 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.251 0.749 37 H 0.229 0.771 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.286 0.714 42 H 0.163 0.837 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.225 0.775 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.688 2.927 36.012 36.171 hybrid contribution -0.325 0.623 -0.495 0.860 sum 1.363 3.550 35.517 35.720 Atomic orbital electron populations 1.22436 0.95332 1.02563 1.03167 1.21615 0.93781 0.98218 0.88707 0.89058 1.21706 0.92452 1.02026 0.98137 1.21294 0.95561 0.96471 0.86249 1.45788 1.06938 1.55903 1.27026 1.17183 0.82715 0.78708 0.83248 1.90807 1.56642 1.48525 1.50272 1.20269 0.91905 1.09501 0.99089 1.22970 0.99633 0.97138 0.88666 1.46037 1.09145 1.39651 1.20038 1.22544 0.84723 1.03914 0.96881 1.20340 0.80195 0.98661 0.93007 1.84878 1.85561 1.32978 1.21025 1.70720 1.32443 1.14127 1.04338 1.60192 1.58898 1.09258 1.03211 1.21643 1.01667 0.95415 0.88164 1.21090 0.82384 0.87979 0.85008 1.90545 1.55286 1.18826 1.85282 1.42036 1.60684 1.11854 1.08811 1.19009 1.42324 0.96061 0.88424 0.92876 1.26149 0.96440 1.05142 0.93829 1.69812 1.46403 1.39596 1.01792 0.85337 0.80203 0.76342 0.79452 1.18295 1.19897 1.15312 0.89897 0.92598 0.92512 0.91325 0.88328 0.92055 0.93222 0.74948 0.77052 0.87746 0.87481 0.87788 0.71366 0.83681 0.90393 0.87137 0.77469 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.16 71.98 0.66 -2.15 16 2 C 0.09 1.74 2.59 44.91 0.12 1.86 16 3 H 0.09 1.66 7.80 -2.38 -0.02 1.65 16 4 C -0.10 -1.98 5.00 30.60 0.15 -1.83 16 5 C 0.13 3.30 5.56 86.38 0.48 3.78 16 6 N -0.71 -17.84 5.55 -466.51 -2.59 -20.43 16 7 C 0.59 17.54 7.81 86.61 0.68 18.22 16 8 O -0.58 -21.27 16.88 -4.15 -0.07 -21.34 16 9 C -0.08 -1.93 6.97 40.40 0.28 -1.65 16 10 C 0.06 0.98 11.29 83.53 0.94 1.92 16 11 N -0.46 -5.59 3.16 -662.74 -2.09 -7.68 16 12 C 0.06 0.13 11.11 127.77 1.42 1.54 16 13 C 0.38 6.18 9.03 179.84 1.62 7.80 16 14 O -0.44 -4.48 13.54 -87.50 -1.19 -5.67 16 15 N -0.49 -10.88 11.03 -303.16 -3.34 -14.22 16 16 N -0.68 -20.33 5.33 -495.58 -2.64 -22.97 16 17 C 0.06 2.00 5.97 85.56 0.51 2.51 16 18 C 0.45 21.03 7.82 87.66 0.69 21.72 16 19 O -0.62 -35.59 15.78 -3.06 -0.05 -35.64 16 20 N -0.59 -28.97 5.09 -306.99 -1.56 -30.53 16 21 C -0.33 -19.94 10.16 84.04 0.85 -19.08 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -57.85 13.96 21.66 0.30 -57.55 16 25 Si 0.97 39.92 27.74 68.60 1.90 41.82 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.93 7.45 -2.38 -0.02 0.91 16 31 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.70 7.75 -2.38 -0.02 1.69 16 36 H 0.41 8.81 8.18 -92.71 -0.76 8.05 16 37 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.10 0.05 8.13 -2.38 -0.02 0.03 16 41 H 0.43 -0.36 9.06 -74.06 -0.67 -1.03 16 42 H 0.34 11.03 8.17 -89.69 -0.73 10.30 16 43 H 0.08 1.98 7.44 -2.38 -0.02 1.96 16 44 H 0.11 3.03 8.06 -2.39 -0.02 3.01 16 45 H 0.39 15.76 5.76 -92.71 -0.53 15.22 16 46 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -93.94 395.29 -4.16 -98.09 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -1.70 Total: 42.02 kcal Atomic # 6 Polarization: 25.25 SS G_CDS: 8.87 Total: 34.12 kcal Atomic # 7 Polarization: -141.47 SS G_CDS: -11.93 Total: -153.39 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.30 Total: -62.65 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.90 Total: 41.82 kcal Total: -93.94 -4.16 -98.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700326591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.069 kcal (2) G-P(sol) polarization free energy of solvation -93.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds