Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 5 5 C 1.46895 * 111.00561 * 275.00137 * 4 2 1 6 6 C 1.50699 * 109.47505 * 180.02562 * 5 4 2 7 7 O 1.21295 * 119.99607 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99820 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00168 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99647 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00321 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99765 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46915 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47110 * 119.99461 * 13 11 9 16 16 H 1.48498 * 109.46966 * 239.99913 * 13 11 9 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 H 1.09002 * 109.47103 * 300.00247 * 17 2 1 19 19 C 1.52997 * 109.47482 * 179.97438 * 17 2 1 20 20 N 1.46510 * 109.46966 * 59.99937 * 17 2 1 21 21 C 1.34774 * 119.99612 * 205.00152 * 20 17 2 22 22 O 1.21635 * 120.00810 * 0.02562 * 21 20 17 23 23 C 1.47256 * 119.99677 * 180.02562 * 21 20 17 24 24 C 1.36243 * 126.16965 * 179.71514 * 23 21 20 25 25 N 1.36330 * 106.89318 * 179.90248 * 24 23 21 26 26 C 1.46503 * 126.20065 * 180.13642 * 25 24 23 27 27 C 1.36174 * 107.60250 * 0.35587 * 25 24 23 28 28 O 1.35453 * 125.55562 * 179.79566 * 27 25 24 29 29 N 1.30709 * 108.89143 * 359.77843 * 27 25 24 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.00906 * 110.99706 * 38.96022 * 4 2 1 34 34 H 1.09004 * 109.46925 * 300.00216 * 5 4 2 35 35 H 1.09001 * 109.46797 * 59.99650 * 5 4 2 36 36 H 0.97001 * 120.00239 * 359.97438 * 8 6 5 37 37 H 0.96999 * 119.99987 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47261 * 180.02562 * 19 17 2 39 39 H 1.09002 * 109.47153 * 300.00216 * 19 17 2 40 40 H 1.09001 * 109.47289 * 60.00300 * 19 17 2 41 41 H 0.96995 * 119.99596 * 25.00171 * 20 17 2 42 42 H 1.08003 * 126.54913 * 0.03241 * 24 23 21 43 43 H 1.09000 * 109.47112 * 270.28660 * 26 25 24 44 44 H 1.08994 * 109.47222 * 30.29210 * 26 25 24 45 45 H 1.09007 * 109.47003 * 150.28847 * 26 25 24 46 46 H 0.96702 * 113.99640 * 270.00673 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5885 -0.5214 3.5558 7 8 2.8688 -1.6984 3.4700 8 7 2.7286 0.1207 4.7324 9 6 3.1885 -0.5564 5.8323 10 1 3.4381 -1.6043 5.7560 11 6 3.3335 0.1058 7.0453 12 7 3.0303 1.3811 7.1381 13 14 3.9594 -0.8168 8.5441 14 1 4.2268 -2.2311 8.1787 15 1 5.2132 -0.1843 9.0268 16 1 2.9352 -0.7688 9.6183 17 6 2.0400 -0.7212 -1.2491 18 1 1.6767 -1.7489 -1.2491 19 6 3.5700 -0.7207 -1.2494 20 7 1.5517 -0.0306 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7119 -1.8834 -3.6608 23 6 0.9327 -0.0088 -4.8088 24 6 0.7603 -0.5614 -6.0422 25 7 0.2908 0.4260 -6.8565 26 6 -0.0426 0.2909 -8.2767 27 6 0.1924 1.5619 -6.1119 28 8 -0.2338 2.7656 -6.5640 29 7 0.5758 1.3014 -4.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4979 1.4101 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5041 1.0619 4.8011 37 1 3.1318 1.8434 7.9847 38 1 3.9334 -1.2342 -2.1397 39 1 3.9330 0.3071 -1.2497 40 1 3.9338 -1.2343 -0.3595 41 1 1.3210 0.9105 -2.4018 42 1 0.9561 -1.5863 -6.3208 43 1 0.8403 0.5045 -8.8791 44 1 -0.3807 -0.7261 -8.4754 45 1 -0.8356 0.9938 -8.5322 46 1 0.4724 3.3280 -6.9106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700418867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = -44.831724 kcal Electronic energy + Delta-G solvation = -28578.070763 eV Core-core repulsion = 24311.509679 eV Total energy + Delta-G solvation = -4266.561084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62349 -39.72668 -38.37735 -37.80454 -37.03557 -34.74137 -34.35227 -33.72992 -31.24047 -30.74046 -29.62879 -29.34748 -27.70571 -26.24120 -24.31330 -24.01879 -22.65861 -21.89562 -20.62810 -20.34192 -19.24513 -18.97096 -17.93018 -17.82267 -16.81684 -16.32733 -16.10289 -15.81573 -15.17142 -15.00315 -14.87143 -14.82273 -14.50486 -14.35498 -13.84420 -13.74061 -13.71679 -13.44010 -13.38329 -13.12891 -12.91946 -12.44972 -12.26620 -12.12172 -12.00540 -11.53254 -11.45515 -11.40063 -11.16758 -11.01801 -10.78593 -10.57077 -10.31167 -10.30746 -10.19048 -10.12302 -9.48147 -9.16226 -8.89129 -8.40679 -7.99153 -7.91312 -6.38167 -3.78701 1.11821 1.67546 1.91713 2.94047 3.19408 3.28662 3.29913 3.37344 3.41348 3.95611 4.08134 4.14770 4.18586 4.44132 4.45714 4.66123 4.74783 4.79195 4.99576 5.04154 5.23172 5.25784 5.32687 5.37026 5.55907 5.62916 5.76582 5.80268 5.80683 5.91989 6.00576 6.02239 6.10304 6.16800 6.20319 6.31033 6.50550 6.66378 6.98929 7.15378 7.25367 7.56875 7.59138 7.70780 8.10685 8.18933 8.65389 9.21996 9.58643 10.10198 10.79702 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032898 B = 0.001691 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.905727 B =16552.502476 C =17054.193276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.657 5.657 5 C 0.052 3.948 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.153 3.847 18 H 0.090 0.910 19 C -0.152 4.152 20 N -0.707 5.707 21 C 0.605 3.395 22 O -0.541 6.541 23 C -0.045 4.045 24 C 0.043 3.957 25 N -0.464 5.464 26 C 0.067 3.933 27 C 0.377 3.623 28 O -0.440 6.440 29 N -0.454 5.454 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.352 0.648 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.406 0.594 42 H 0.196 0.804 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 4.298 -32.145 33.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.100 0.900 4 N -0.290 5.290 5 C -0.080 4.080 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.049 3.951 18 H 0.108 0.892 19 C -0.210 4.210 20 N -0.358 5.358 21 C 0.390 3.610 22 O -0.418 6.418 23 C -0.174 4.174 24 C -0.094 4.094 25 N -0.159 5.159 26 C -0.075 4.075 27 C 0.076 3.924 28 O -0.240 6.240 29 N -0.184 5.184 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.241 0.759 42 H 0.213 0.787 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.667 3.329 -31.535 32.404 hybrid contribution -0.624 0.731 0.078 0.965 sum -7.292 4.061 -31.457 32.546 Atomic orbital electron populations 1.22536 0.97060 1.02522 1.02227 1.21743 0.92688 0.98216 0.90719 0.90019 1.60002 1.57630 1.09121 1.02208 1.21690 0.99963 0.95653 0.90724 1.19816 0.85069 0.88239 0.84167 1.90532 1.55185 1.16246 1.84606 1.41868 1.57893 1.12472 1.07945 1.19762 1.39771 0.96469 0.86744 0.87854 1.25256 0.97728 0.95775 0.99242 1.69619 1.48871 1.08852 1.27046 0.85804 0.78207 0.79657 0.80701 1.19213 1.20779 1.20827 1.20913 0.94967 0.97096 0.82124 0.89192 1.22039 0.94203 1.01844 1.02934 1.45860 1.66264 1.14431 1.09227 1.16739 0.77157 0.85484 0.81615 1.90826 1.51299 1.14941 1.84739 1.20491 1.11211 0.90768 0.94926 1.22682 1.01299 0.95237 0.90211 1.45837 1.49062 1.09865 1.11128 1.22166 1.02808 1.05238 0.77279 1.20272 1.03540 0.82717 0.85843 1.84902 1.36004 1.21902 1.81192 1.70868 1.16435 1.14865 1.16253 0.92223 0.92032 0.92290 0.82751 0.89576 0.93775 0.77487 0.91979 0.93083 0.93172 0.89486 0.75919 0.78682 0.89990 0.88879 0.88826 0.74022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.00 37.16 0.33 -1.79 16 2 C 0.08 0.98 2.22 -67.72 -0.15 0.83 16 3 H 0.08 0.97 7.80 -51.93 -0.40 0.57 16 4 N -0.66 -10.49 5.11 -108.00 -0.55 -11.05 16 5 C 0.05 0.92 5.96 -4.98 -0.03 0.89 16 6 C 0.44 10.45 7.82 -10.99 -0.09 10.37 16 7 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 8 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 10 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 13 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 C 0.15 1.98 2.34 -67.93 -0.16 1.82 16 18 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 19 C -0.15 -2.06 9.33 37.16 0.35 -1.71 16 20 N -0.71 -8.27 4.38 -54.93 -0.24 -8.51 16 21 C 0.60 7.80 7.77 -12.60 -0.10 7.70 16 22 O -0.54 -8.41 16.54 5.25 0.09 -8.33 16 23 C -0.04 -0.49 6.97 -83.06 -0.58 -1.07 16 24 C 0.04 0.35 11.29 -16.27 -0.18 0.17 16 25 N -0.46 -2.91 3.16 -125.77 -0.40 -3.30 16 26 C 0.07 0.12 11.11 59.85 0.66 0.78 16 27 C 0.38 3.12 9.03 -89.16 -0.81 2.31 16 28 O -0.44 -2.55 13.55 -18.05 -0.24 -2.80 16 29 N -0.45 -4.89 11.03 -11.21 -0.12 -5.01 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 32 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 33 H 0.35 5.93 8.17 -39.29 -0.32 5.61 16 34 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 35 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 36 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.33 7.60 -51.93 -0.39 0.94 16 41 H 0.41 4.28 8.10 -40.82 -0.33 3.94 16 42 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 46 H 0.40 0.28 9.06 45.56 0.41 0.70 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -36.39 395.74 -6.56 -42.96 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -5.80 Total: 15.87 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.99 Total: 12.23 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.65 Total: -66.36 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.07 Total: -26.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.39 -6.56 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700418867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds